Gcaud239.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud239.t1
Unique Name	Gcaud239.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	208

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_417_length_26175_cov_4.521967	contig	NODE_417_length_26175_cov_4.521967:10492..11247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud239	Gcaud239	Gracilaria caudata M_176_S67 male	gene	NODE_417_length_26175_cov_4.521967 10492..11247 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud239.t1	Gcaud239.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_417_length_26175_cov_4.521967 10492..11247 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud239.t1.start1	Gcaud239.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_417_length_26175_cov_4.521967 10492..10494 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud239.t1.CDS1	Gcaud239.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_417_length_26175_cov_4.521967 10492..10792 +
Gcaud239.t1.CDS2	Gcaud239.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_417_length_26175_cov_4.521967 10925..11247 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud239.t1.exon1	Gcaud239.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_417_length_26175_cov_4.521967 10492..10792 +
Gcaud239.t1.exon2	Gcaud239.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_417_length_26175_cov_4.521967 10925..11247 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud239.t1.intron1	Gcaud239.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_417_length_26175_cov_4.521967 10793..10924 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud239.t1.stop1	Gcaud239.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_417_length_26175_cov_4.521967 11245..11247 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+
coding sequence from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+

mRNA sequence

>Gcaud239.t1 ID=Gcaud239.t1|Name=Gcaud239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=208bp
MLIDRSSLSEPMGLLMVDVDDDVIFPLPEENDDEDIGSYKDLFAQQNRVR
NDIQTSGALQTSEDNDKDENKNEKDAEEEKITTSRFLVPRLKESELIVLT
RTDIEREYLDTVAELQAGAKCGDATQKKHILSAFSLGSNANDVTLLRVVK
SLSDFLLKHEVLKPEPKKENEEQEKDTLEINATDAEIGEYRRSMSDGLSW
FWAALDK*

spliced messenger RNA

>Gcaud239.t1 ID=Gcaud239.t1|Name=Gcaud239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp|location=Sequence derived from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTATCGACCGCTCTAGCCTGTCAGAACCTATGGGTCTTCTCATGGT
TGATGTAGATGATGACGTTATCTTTCCATTGCCGGAAGAGAATGATGACG
AAGACATTGGCAGCTACAAGGATCTTTTTGCTCAACAAAACCGAGTACGG
AACGACATTCAGACATCCGGGGCACTTCAGACTTCCGAAGACAACGACAA
AGACGAAAATAAGAACGAGAAAGACGCCGAAGAGGAGAAAATTACTACAT
CCAGATTTCTAGTACCCCGACTGAAGGAATCAGAACTCATCGTCCTTACA
AGGACAGATATTGAAAGGGAGTACTTAGACACCGTTGCAGAACTACAAGC
AGGTGCAAAATGCGGTGATGCTACACAAAAGAAGCACATACTATCGGCGT
TCTCCCTGGGAAGCAACGCTAACGACGTCACATTACTTCGAGTGGTGAAA
TCATTATCGGACTTTTTGCTCAAGCACGAAGTTTTAAAACCGGAACCGAA
AAAAGAGAACGAAGAACAAGAGAAAGATACCTTGGAGATTAATGCTACCG
ACGCAGAGATTGGGGAATACAGAAGGTCAATGTCTGACGGGTTGTCGTGG
TTTTGGGCTGCCCTAGACAAGTAG

protein sequence of Gcaud239.t1

>Gcaud239.t1 ID=Gcaud239.t1|Name=Gcaud239.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=208bp
MLIDRSSLSEPMGLLMVDVDDDVIFPLPEENDDEDIGSYKDLFAQQNRVR
NDIQTSGALQTSEDNDKDENKNEKDAEEEKITTSRFLVPRLKESELIVLT
RTDIEREYLDTVAELQAGAKCGDATQKKHILSAFSLGSNANDVTLLRVVK
SLSDFLLKHEVLKPEPKKENEEQEKDTLEINATDAEIGEYRRSMSDGLSW
FWAALDK*

mRNA from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud239.t1 ID=Gcaud239.t1|Name=Gcaud239.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+ (Gracilaria caudata M_176_S67 male)
ATGCTTATCGACCGCTCTAGCCTGTCAGAACCTATGGGTCTTCTCATGGT
TGATGTAGATGATGACGTTATCTTTCCATTGCCGGAAGAGAATGATGACG
AAGACATTGGCAGCTACAAGGATCTTTTTGCTCAACAAAACCGAGTACGG
AACGACATTCAGACATCCGGGGCACTTCAGACTTCCGAAGACAACGACAA
AGACGAAAATAAGAACGAGAAAGACGCCGAAGAGGAGAAAATTACTACAT
CCAGATTTCTAGTACCCCGACTGAAGGAATCAGAACTCATCGTCCTTACA
AGTGTTTTTTGAAGGTCCTCATTTGTGAACGAGACTCACAACTTGACAAG
CCGCTCCGTTGGGTGACTGGGCGAGCTCCTGGAGAGCAGAAAGATATTCA
TGTCGTCTTTGGTAACGATCGACAAGCAAACAGGGACAGATATTGAAAGG
GAGTACTTAGACACCGTTGCAGAACTACAAGCAGGTGCAAAATGCGGTGA
TGCTACACAAAAGAAGCACATACTATCGGCGTTCTCCCTGGGAAGCAACG
CTAACGACGTCACATTACTTCGAGTGGTGAAATCATTATCGGACTTTTTG
CTCAAGCACGAAGTTTTAAAACCGGAACCGAAAAAAGAGAACGAAGAACA
AGAGAAAGATACCTTGGAGATTAATGCTACCGACGCAGAGATTGGGGAAT
ACAGAAGGTCAATGTCTGACGGGTTGTCGTGGTTTTGGGCTGCCCTAGAC
AAGTAG

Coding sequence (CDS) from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+

>Gcaud239.t1 ID=Gcaud239.t1|Name=Gcaud239.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=624bp|location=Sequence derived from alignment at NODE_417_length_26175_cov_4.521967:10492..11247+ (Gracilaria caudata M_176_S67 male)
ATGCTTATCGACCGCTCTAGCCTGTCAGAACCTATGGGTCTTCTCATGGT
TGATGTAGATGATGACGTTATCTTTCCATTGCCGGAAGAGAATGATGACG
AAGACATTGGCAGCTACAAGGATCTTTTTGCTCAACAAAACCGAGTACGG
AACGACATTCAGACATCCGGGGCACTTCAGACTTCCGAAGACAACGACAA
AGACGAAAATAAGAACGAGAAAGACGCCGAAGAGGAGAAAATTACTACAT
CCAGATTTCTAGTACCCCGACTGAAGGAATCAGAACTCATCGTCCTTACA
AGGACAGATATTGAAAGGGAGTACTTAGACACCGTTGCAGAACTACAAGC
AGGTGCAAAATGCGGTGATGCTACACAAAAGAAGCACATACTATCGGCGT
TCTCCCTGGGAAGCAACGCTAACGACGTCACATTACTTCGAGTGGTGAAA
TCATTATCGGACTTTTTGCTCAAGCACGAAGTTTTAAAACCGGAACCGAA
AAAAGAGAACGAAGAACAAGAGAAAGATACCTTGGAGATTAATGCTACCG
ACGCAGAGATTGGGGAATACAGAAGGTCAATGTCTGACGGGTTGTCGTGG
TTTTGGGCTGCCCTAGACAAGTAG