Gcaud240.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud240.t1
Unique Name	Gcaud240.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_417_length_26175_cov_4.521967	contig	NODE_417_length_26175_cov_4.521967:14304..15215 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709187.1
PFAMs	Acyltransferase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00037,RC00994
KEGG ko	ko:K08246,ko:K13510
KEGG Reaction	R01318,R03437,R03438,R03775,R09036
KEGG Pathway	ko00100,ko00564,ko00565,ko01100,ko01110,map00100,map00564,map00565,map01100,map01110
GOs	GO:0000038,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0047184,GO:0050200,GO:0071617,GO:0071618,GO:0071704,GO:0090407,GO:1901576
Evalue	1.05e-33
EggNOG OGs	COG0204@1\|root,KOG4666@2759\|Eukaryota
EC	2.3.1.23,2.3.1.67,5.5.1.9
Description	1-alkylglycerophosphocholine O-acetyltransferase activity
COG category	I
BRITE	ko00000,ko00001,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud240	Gcaud240	Gracilaria caudata M_176_S67 male	gene	NODE_417_length_26175_cov_4.521967 14304..15215 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud240.t1.stop1	Gcaud240.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_417_length_26175_cov_4.521967 14304..14306 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud240.t1.CDS1	Gcaud240.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_417_length_26175_cov_4.521967 14304..15215 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud240.t1.exon1	Gcaud240.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_417_length_26175_cov_4.521967 14304..15215 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud240.t1.start1	Gcaud240.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_417_length_26175_cov_4.521967 15213..15215 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud240.t1	Gcaud240.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_417_length_26175_cov_4.521967 14304..15215 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_417_length_26175_cov_4.521967:14304..15215-
coding sequence from alignment at NODE_417_length_26175_cov_4.521967:14304..15215-

mRNA sequence

>Gcaud240.t1 ID=Gcaud240.t1|Name=Gcaud240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp
LFVLQALSRDGDNCDFSEYLTLRRFYLCISDIYVTENAVSTNHPAEPTEA
NEKAEAAFIAKHDCLRRAVSHPAFDPFRRHSSKPHVLEGILIKLCAIVLN
PLRLLVAYIFFLHSYVVVKLFGPTVSKQNITHFEPALLPKWIHRIVAAAS
KFLGRALLFPLGFWIVEGDNHREYDHGNACKATVLTNHSSLADPCLLAYF
YAPAFFAKSDVWKIPGIGRVGAGQHGFYIDRIENNDIGVLKAIADRQRLV
QDSALEIPPVAIFPEGTTTNGRHMLSFKTGAFVAGLPVAPLLIRYEYKWI
SPT*

spliced messenger RNA

>Gcaud240.t1 ID=Gcaud240.t1|Name=Gcaud240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_417_length_26175_cov_4.521967:14304..15215- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTTGTATTGCAAGCTCTCAGCCGCGACGGTGACAACTGTGATTTCAG
TGAGTACTTAACGCTTCGACGATTCTATCTGTGCATCTCAGACATCTACG
TGACCGAAAACGCCGTGAGCACTAACCACCCCGCAGAACCAACGGAGGCG
AACGAGAAGGCGGAGGCTGCTTTCATAGCCAAGCATGATTGCCTTCGTCG
AGCGGTCTCACACCCAGCATTCGATCCGTTTCGAAGGCATTCTTCGAAAC
CACATGTGCTAGAGGGCATTCTTATCAAACTGTGTGCCATTGTTCTTAAT
CCACTGCGGCTACTTGTAGCTTATATATTTTTTCTTCATTCATACGTTGT
TGTCAAGTTATTTGGACCGACTGTTTCAAAGCAGAACATCACTCATTTTG
AACCCGCCTTATTGCCCAAATGGATACATCGCATTGTAGCAGCAGCGTCG
AAGTTCCTTGGACGCGCACTATTGTTCCCATTGGGTTTTTGGATTGTTGA
AGGAGACAACCATCGGGAATACGATCACGGGAACGCGTGCAAGGCGACAG
TTTTGACAAATCATTCGAGTCTCGCTGACCCATGTTTACTTGCGTACTTT
TATGCTCCGGCGTTTTTCGCCAAATCTGACGTGTGGAAGATTCCAGGAAT
CGGCCGCGTTGGTGCTGGCCAGCACGGGTTTTACATTGACCGGATAGAAA
ACAATGACATTGGTGTTTTGAAAGCCATAGCCGATCGTCAGCGTCTTGTG
CAAGATTCTGCCCTCGAAATTCCTCCGGTGGCTATCTTCCCGGAGGGAAC
GACTACAAACGGAAGACATATGCTGTCTTTTAAGACGGGAGCTTTTGTAG
CAGGTTTGCCTGTAGCACCGCTGCTTATTCGGTACGAGTACAAATGGATT
TCCCCAACATAA

protein sequence of Gcaud240.t1

>Gcaud240.t1 ID=Gcaud240.t1|Name=Gcaud240.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
LFVLQALSRDGDNCDFSEYLTLRRFYLCISDIYVTENAVSTNHPAEPTEA
NEKAEAAFIAKHDCLRRAVSHPAFDPFRRHSSKPHVLEGILIKLCAIVLN
PLRLLVAYIFFLHSYVVVKLFGPTVSKQNITHFEPALLPKWIHRIVAAAS
KFLGRALLFPLGFWIVEGDNHREYDHGNACKATVLTNHSSLADPCLLAYF
YAPAFFAKSDVWKIPGIGRVGAGQHGFYIDRIENNDIGVLKAIADRQRLV
QDSALEIPPVAIFPEGTTTNGRHMLSFKTGAFVAGLPVAPLLIRYEYKWI
SPT*

mRNA from alignment at NODE_417_length_26175_cov_4.521967:14304..15215-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud240.t1 ID=Gcaud240.t1|Name=Gcaud240.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_417_length_26175_cov_4.521967:14304..15215- (Gracilaria caudata M_176_S67 male)
TTGTTTGTATTGCAAGCTCTCAGCCGCGACGGTGACAACTGTGATTTCAG
TGAGTACTTAACGCTTCGACGATTCTATCTGTGCATCTCAGACATCTACG
TGACCGAAAACGCCGTGAGCACTAACCACCCCGCAGAACCAACGGAGGCG
AACGAGAAGGCGGAGGCTGCTTTCATAGCCAAGCATGATTGCCTTCGTCG
AGCGGTCTCACACCCAGCATTCGATCCGTTTCGAAGGCATTCTTCGAAAC
CACATGTGCTAGAGGGCATTCTTATCAAACTGTGTGCCATTGTTCTTAAT
CCACTGCGGCTACTTGTAGCTTATATATTTTTTCTTCATTCATACGTTGT
TGTCAAGTTATTTGGACCGACTGTTTCAAAGCAGAACATCACTCATTTTG
AACCCGCCTTATTGCCCAAATGGATACATCGCATTGTAGCAGCAGCGTCG
AAGTTCCTTGGACGCGCACTATTGTTCCCATTGGGTTTTTGGATTGTTGA
AGGAGACAACCATCGGGAATACGATCACGGGAACGCGTGCAAGGCGACAG
TTTTGACAAATCATTCGAGTCTCGCTGACCCATGTTTACTTGCGTACTTT
TATGCTCCGGCGTTTTTCGCCAAATCTGACGTGTGGAAGATTCCAGGAAT
CGGCCGCGTTGGTGCTGGCCAGCACGGGTTTTACATTGACCGGATAGAAA
ACAATGACATTGGTGTTTTGAAAGCCATAGCCGATCGTCAGCGTCTTGTG
CAAGATTCTGCCCTCGAAATTCCTCCGGTGGCTATCTTCCCGGAGGGAAC
GACTACAAACGGAAGACATATGCTGTCTTTTAAGACGGGAGCTTTTGTAG
CAGGTTTGCCTGTAGCACCGCTGCTTATTCGGTACGAGTACAAATGGATT
TCCCCAACATAA

Coding sequence (CDS) from alignment at NODE_417_length_26175_cov_4.521967:14304..15215-

>Gcaud240.t1 ID=Gcaud240.t1|Name=Gcaud240.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=912bp|location=Sequence derived from alignment at NODE_417_length_26175_cov_4.521967:14304..15215- (Gracilaria caudata M_176_S67 male)
TTGTTTGTATTGCAAGCTCTCAGCCGCGACGGTGACAACTGTGATTTCAG
TGAGTACTTAACGCTTCGACGATTCTATCTGTGCATCTCAGACATCTACG
TGACCGAAAACGCCGTGAGCACTAACCACCCCGCAGAACCAACGGAGGCG
AACGAGAAGGCGGAGGCTGCTTTCATAGCCAAGCATGATTGCCTTCGTCG
AGCGGTCTCACACCCAGCATTCGATCCGTTTCGAAGGCATTCTTCGAAAC
CACATGTGCTAGAGGGCATTCTTATCAAACTGTGTGCCATTGTTCTTAAT
CCACTGCGGCTACTTGTAGCTTATATATTTTTTCTTCATTCATACGTTGT
TGTCAAGTTATTTGGACCGACTGTTTCAAAGCAGAACATCACTCATTTTG
AACCCGCCTTATTGCCCAAATGGATACATCGCATTGTAGCAGCAGCGTCG
AAGTTCCTTGGACGCGCACTATTGTTCCCATTGGGTTTTTGGATTGTTGA
AGGAGACAACCATCGGGAATACGATCACGGGAACGCGTGCAAGGCGACAG
TTTTGACAAATCATTCGAGTCTCGCTGACCCATGTTTACTTGCGTACTTT
TATGCTCCGGCGTTTTTCGCCAAATCTGACGTGTGGAAGATTCCAGGAAT
CGGCCGCGTTGGTGCTGGCCAGCACGGGTTTTACATTGACCGGATAGAAA
ACAATGACATTGGTGTTTTGAAAGCCATAGCCGATCGTCAGCGTCTTGTG
CAAGATTCTGCCCTCGAAATTCCTCCGGTGGCTATCTTCCCGGAGGGAAC
GACTACAAACGGAAGACATATGCTGTCTTTTAAGACGGGAGCTTTTGTAG
CAGGTTTGCCTGTAGCACCGCTGCTTATTCGGTACGAGTACAAATGGATT
TCCCCAACATAA