Gcaud8750.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8750.t1
Unique NameGcaud8750.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length249
Homology
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BLAST of Gcaud8750.t1 vs. uniprot
Match: A0A2V3IR00_9FLOR (Small ubiquitin-related modifier 3-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR00_9FLOR)

HSP 1 Score: 209 bits (531), Expect = 4.430e-64
Identity = 145/250 (58.00%), Postives = 179/250 (71.60%), Query Frame = 0 
Query:    1 MLDDPDSDTELLCHGGNSKIVSYYSELAKSGDVDXXXXXXXXXXXFDVMAFTTRRKGKRPRGRPPKKESQPPQKKIATASKTAKTVFEISDDDEVVTVTE--RDRFDEEDLGARLAAERARSVLAESTRDNTDLEEAIRLXXXXXXXXXXXXXXXXXXXXXXXXXXQREKSKFEAIVFKARHGSQVMRVRMRTTDPLRRLLPKFCRDFGLDSSKAYMEFDGEELGPNDTPQSVELEQDMIVDVFQRGSRK 248
            MLDDPDSDTELL   G +K+VSYYS+L      D XXXXXXXXXXFD++A +     KR RGRPPK +S PP KK ATA++ +KTVF+ISDD+  V +T+      D +D  A LAA+RAR VLA S ++N  +E+AIR  XXXXXXXXXXXX             ++ K + + +VFKARHG  V +VRMRTTDP+ +LLPKFC+DFGLD  K YMEFDGEE+G NDTP S+E+EQD IVDV+ RGSR+
Sbjct:    1 MLDDPDSDTELLAQDGGAKMVSYYSKLN-----DDXXXXXXXXXXFDMLAVSLASSRKRSRGRPPKIKSLPPSKKPATAARRSKTVFDISDDEHQVRITKVHEKELDAKDKEASLAAQRARHVLASSMKENALVEQAIRREXXXXXXXXXXXXRIKEQSEKAQLIARQNKPQ-QGVVFKARHGDNVKKVRMRTTDPVTKLLPKFCKDFGLDVKKVYMEFDGEEVGANDTPASLEIEQDEIVDVYVRGSRR 244
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BLAST of Gcaud8750.t1 vs. uniprot
Match: R7QIH4_CHOCR (Rad60-SLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIH4_CHOCR)

HSP 1 Score: 69.7 bits (169), Expect = 1.980e-10
Identity = 89/262 (33.97%), Postives = 130/262 (49.62%), Query Frame = 0 
Query:    8 DTELLCHGGNSKIVSYYSELAKSG----DVDXXXXXXXXXXX-FDVMAFTTRRKGKRPRGRPPKKESQPPQKKIATASKTA-------KTVFEIS---DDDEVVTV---TERDRFDEEDLGARLAAERARSVLAESTRDNTDLEEAIRLXXXXXXXXXXXXXXXXXXXXXXXXXXQREKSKFEA------IVFKARHGSQVMRVRMRTTDPLRRLLPKFCRDFGLDSSKAYMEFDGEELGPNDTPQSVELEQDMIVDVFQRG 245
            D ++   GG  K +S YS    +     D+D XXXXXXXXX   ++ AFT  R+  RP  R     +    +K ATA   A       ++VF+IS   + DEVV V    +    D  D     +  +AR+VLA    +     +  RL              XXXXXXXXXXXX       +A      +  K R G   +++R+R +DP+ ++L  FC+ F L+   A M+FDGE++  +DTP ++ELE+ M++DV  R 
Sbjct:   15 DEDIFMQGGIPKPISMYSSAFATAPQVTDLDAXXXXXXXXXIALNLDAFTKPRRRGRPSKRARTSANTTASQKQATAKNAAHGTKQKNRSVFDISSGEESDEVVVVESHNDETNMDAHDKSVAASLAQARAVLATQANEEKIAADVQRLAKEQSERVERSRCQXXXXXXXXXXXXXXXXXXLKAAQTAAPVQLKVRSGQNQIKMRIRRSDPVLKMLGPFCKKFDLNLPNAVMQFDGEQVEESDTPDTLELEEGMLIDVITRS 276
The following BLAST results are available for this feature:
BLAST of Gcaud8750.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IR00_9FLOR4.430e-6458.00Small ubiquitin-related modifier 3-like n=1 Tax=Gr... [more]
R7QIH4_CHOCR1.980e-1033.97Rad60-SLD domain-containing protein n=1 Tax=Chondr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 115..170
NoneNo IPR availableGENE3D3.10.20.90coord: 139..245
e-value: 6.6E-16
score: 60.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..46
NoneNo IPR availableCDDcd01763Ubl_SUMO_likecoord: 174..242
e-value: 1.69073E-11
score: 56.4345
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 179..241
e-value: 2.6E-9
score: 36.7
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 165..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:9912..10658 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8750.t1Gcaud8750.t1Gracilaria caudata M_176_S67 malemRNANODE_40_length_68803_cov_4.393963 9912..10658 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8750.t1 ID=Gcaud8750.t1|Name=Gcaud8750.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MLDDPDSDTELLCHGGNSKIVSYYSELAKSGDVDDDDDEDDDDDNFDVMA
FTTRRKGKRPRGRPPKKESQPPQKKIATASKTAKTVFEISDDDEVVTVTE
RDRFDEEDLGARLAAERARSVLAESTRDNTDLEEAIRLQEEARLEREAEL
RRKQDAERKAQEKRQREKSKFEAIVFKARHGSQVMRVRMRTTDPLRRLLP
KFCRDFGLDSSKAYMEFDGEELGPNDTPQSVELEQDMIVDVFQRGSRK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022617Rad60/SUMO-like_dom
IPR029071Ubiquitin-like_domsf