Gcaud8767.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8767.t1
Unique Name	Gcaud8767.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:46523..48067 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX38890
PFAMs	SufE,tRNA_Me_trans
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00037,RC00039
KEGG ko	ko:K13523,ko:K21027
KEGG Reaction	R02241,R09034,R09381
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,ko04072,map00561,map00564,map01100,map01110,map04072
KEGG Module	M00089
Evalue	1.23e-139
EggNOG OGs	COG0482@1\|root,KOG2805@2759\|Eukaryota
EC	2.3.1.51,2.8.1.14
Description	mitochondrial tRNA thio-modification
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8767	Gcaud8767	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 46523..48067 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8767.t1.start1	Gcaud8767.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 46523..46525 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8767.t1.CDS1	Gcaud8767.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 46523..48067 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8767.t1.exon1	Gcaud8767.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 46523..48067 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8767.t1.stop1	Gcaud8767.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 48065..48067 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8767.t1	Gcaud8767.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 46523..48067 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+

mRNA sequence

>Gcaud8767.t1 ID=Gcaud8767.t1|Name=Gcaud8767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=515bp
MVCIPEDKLTASTRVSGCTSITHISIHLSDEGTISIRGYSDARISRGLVA
LFALGLHGCSTKDVLSLNLREVLHKSDLPGVIGSSRINSLGNILRAARKQ
VQMLTENASILRNDTAHILTGRWSERQGEDVAILLSGGVDSSVAMRLALE
SGARPHPFYLKIWLEDELAHMGECPWEEDIEYANAVCNQVGIKLQDIPFQ
RAYWDEVVSYTVQEAQKGRTPNPDVMCNSRIKFGAFYDRIGKYYKKVVTG
HYAQTARDEMGRAELRLSPDELKDQTYFLAHLRQDQLATARFPVGKHTKE
EVRMLAEHYDLPNKNRRDSQGICFLGKLKFDDFLGHHLGQKKGSLVEFET
GQELGHHNGFWFFTLGQRRGVGLSGGPWYVVAKNVSQNIVYVSKDYNNVS
KERNCFEFDSALWISGEWPAKLQHVGDKIKLRVKTRHGPRFHDATLTRLD
DERGRVDLEGRDKGLAPGQFSAFYDIEGRCLGSGVIMSDVSMSDAPVAIK
SLHYLPKKLQAHVR*

spliced messenger RNA

>Gcaud8767.t1 ID=Gcaud8767.t1|Name=Gcaud8767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATGCATTCCTGAGGACAAGCTCACGGCTTCTACACGCGTGTCTGG
ATGCACCTCGATAACTCACATTAGTATACATCTCAGCGATGAAGGTACCA
TCAGCATAAGAGGGTACTCAGATGCACGTATTTCACGCGGCCTTGTTGCT
TTGTTTGCACTTGGACTACATGGATGTTCTACGAAAGACGTACTCAGTCT
GAACCTACGTGAGGTGTTGCACAAATCTGATTTGCCTGGAGTCATAGGTT
CATCTCGGATTAATAGTCTCGGGAACATCTTGCGAGCAGCTCGAAAACAA
GTACAGATGCTTACCGAGAACGCTTCCATTTTGCGGAACGATACTGCACA
CATTCTGACCGGAAGATGGAGTGAAAGGCAAGGCGAGGATGTTGCCATTC
TTCTTTCGGGCGGTGTGGACAGCTCAGTTGCAATGCGTCTTGCTCTTGAA
AGTGGTGCTAGGCCTCACCCTTTTTATCTGAAGATATGGCTTGAAGACGA
ACTAGCCCATATGGGGGAATGCCCATGGGAAGAAGATATTGAGTATGCGA
ACGCCGTGTGTAATCAAGTTGGTATTAAGTTACAAGATATCCCGTTTCAA
CGGGCGTACTGGGATGAGGTTGTCTCGTATACCGTTCAAGAAGCTCAAAA
GGGACGGACCCCAAACCCGGACGTAATGTGCAACTCAAGAATAAAGTTTG
GGGCATTCTATGATCGGATTGGAAAGTATTATAAAAAGGTGGTAACAGGG
CACTACGCTCAGACGGCAAGAGATGAAATGGGAAGGGCAGAGCTAAGACT
ATCGCCGGATGAGTTGAAAGACCAGACGTATTTTCTCGCCCATTTGAGGC
AAGATCAGCTTGCGACAGCTCGTTTTCCGGTTGGGAAGCACACAAAGGAA
GAAGTGCGAATGCTAGCCGAACACTACGATCTTCCAAACAAGAATCGCCG
AGATTCGCAAGGAATCTGCTTTCTAGGCAAGCTTAAGTTTGATGACTTTC
TTGGTCATCATCTTGGGCAGAAAAAAGGATCCCTAGTTGAATTTGAAACC
GGTCAAGAACTTGGTCATCATAATGGGTTTTGGTTTTTTACTCTGGGTCA
AAGAAGAGGGGTTGGGTTGTCTGGTGGGCCTTGGTACGTTGTCGCTAAGA
ATGTATCACAGAATATCGTATACGTAAGTAAGGACTACAACAATGTGTCA
AAAGAGCGAAACTGTTTCGAGTTTGACTCCGCCCTTTGGATTTCTGGTGA
ATGGCCGGCAAAACTGCAACATGTAGGCGACAAAATCAAATTGAGAGTGA
AGACAAGACACGGGCCACGATTTCATGACGCCACATTGACAAGGTTGGAC
GATGAAAGGGGTCGCGTAGATCTTGAAGGAAGGGACAAAGGACTGGCACC
TGGTCAATTCTCAGCTTTTTACGATATCGAGGGAAGATGTCTTGGTTCTG
GTGTTATTATGTCTGATGTTTCCATGTCCGATGCACCTGTTGCCATTAAG
AGCTTGCACTACCTTCCCAAGAAACTTCAGGCGCATGTGCGGTGA

protein sequence of Gcaud8767.t1

>Gcaud8767.t1 ID=Gcaud8767.t1|Name=Gcaud8767.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=515bp
MVCIPEDKLTASTRVSGCTSITHISIHLSDEGTISIRGYSDARISRGLVA
LFALGLHGCSTKDVLSLNLREVLHKSDLPGVIGSSRINSLGNILRAARKQ
VQMLTENASILRNDTAHILTGRWSERQGEDVAILLSGGVDSSVAMRLALE
SGARPHPFYLKIWLEDELAHMGECPWEEDIEYANAVCNQVGIKLQDIPFQ
RAYWDEVVSYTVQEAQKGRTPNPDVMCNSRIKFGAFYDRIGKYYKKVVTG
HYAQTARDEMGRAELRLSPDELKDQTYFLAHLRQDQLATARFPVGKHTKE
EVRMLAEHYDLPNKNRRDSQGICFLGKLKFDDFLGHHLGQKKGSLVEFET
GQELGHHNGFWFFTLGQRRGVGLSGGPWYVVAKNVSQNIVYVSKDYNNVS
KERNCFEFDSALWISGEWPAKLQHVGDKIKLRVKTRHGPRFHDATLTRLD
DERGRVDLEGRDKGLAPGQFSAFYDIEGRCLGSGVIMSDVSMSDAPVAIK
SLHYLPKKLQAHVR*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8767.t1 ID=Gcaud8767.t1|Name=Gcaud8767.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1545bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+ (Gracilaria caudata M_176_S67 male)
ATGGTATGCATTCCTGAGGACAAGCTCACGGCTTCTACACGCGTGTCTGG
ATGCACCTCGATAACTCACATTAGTATACATCTCAGCGATGAAGGTACCA
TCAGCATAAGAGGGTACTCAGATGCACGTATTTCACGCGGCCTTGTTGCT
TTGTTTGCACTTGGACTACATGGATGTTCTACGAAAGACGTACTCAGTCT
GAACCTACGTGAGGTGTTGCACAAATCTGATTTGCCTGGAGTCATAGGTT
CATCTCGGATTAATAGTCTCGGGAACATCTTGCGAGCAGCTCGAAAACAA
GTACAGATGCTTACCGAGAACGCTTCCATTTTGCGGAACGATACTGCACA
CATTCTGACCGGAAGATGGAGTGAAAGGCAAGGCGAGGATGTTGCCATTC
TTCTTTCGGGCGGTGTGGACAGCTCAGTTGCAATGCGTCTTGCTCTTGAA
AGTGGTGCTAGGCCTCACCCTTTTTATCTGAAGATATGGCTTGAAGACGA
ACTAGCCCATATGGGGGAATGCCCATGGGAAGAAGATATTGAGTATGCGA
ACGCCGTGTGTAATCAAGTTGGTATTAAGTTACAAGATATCCCGTTTCAA
CGGGCGTACTGGGATGAGGTTGTCTCGTATACCGTTCAAGAAGCTCAAAA
GGGACGGACCCCAAACCCGGACGTAATGTGCAACTCAAGAATAAAGTTTG
GGGCATTCTATGATCGGATTGGAAAGTATTATAAAAAGGTGGTAACAGGG
CACTACGCTCAGACGGCAAGAGATGAAATGGGAAGGGCAGAGCTAAGACT
ATCGCCGGATGAGTTGAAAGACCAGACGTATTTTCTCGCCCATTTGAGGC
AAGATCAGCTTGCGACAGCTCGTTTTCCGGTTGGGAAGCACACAAAGGAA
GAAGTGCGAATGCTAGCCGAACACTACGATCTTCCAAACAAGAATCGCCG
AGATTCGCAAGGAATCTGCTTTCTAGGCAAGCTTAAGTTTGATGACTTTC
TTGGTCATCATCTTGGGCAGAAAAAAGGATCCCTAGTTGAATTTGAAACC
GGTCAAGAACTTGGTCATCATAATGGGTTTTGGTTTTTTACTCTGGGTCA
AAGAAGAGGGGTTGGGTTGTCTGGTGGGCCTTGGTACGTTGTCGCTAAGA
ATGTATCACAGAATATCGTATACGTAAGTAAGGACTACAACAATGTGTCA
AAAGAGCGAAACTGTTTCGAGTTTGACTCCGCCCTTTGGATTTCTGGTGA
ATGGCCGGCAAAACTGCAACATGTAGGCGACAAAATCAAATTGAGAGTGA
AGACAAGACACGGGCCACGATTTCATGACGCCACATTGACAAGGTTGGAC
GATGAAAGGGGTCGCGTAGATCTTGAAGGAAGGGACAAAGGACTGGCACC
TGGTCAATTCTCAGCTTTTTACGATATCGAGGGAAGATGTCTTGGTTCTG
GTGTTATTATGTCTGATGTTTCCATGTCCGATGCACCTGTTGCCATTAAG
AGCTTGCACTACCTTCCCAAGAAACTTCAGGCGCATGTGCGGTGA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+

>Gcaud8767.t1 ID=Gcaud8767.t1|Name=Gcaud8767.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1545bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:46523..48067+ (Gracilaria caudata M_176_S67 male)
ATGGTATGCATTCCTGAGGACAAGCTCACGGCTTCTACACGCGTGTCTGG
ATGCACCTCGATAACTCACATTAGTATACATCTCAGCGATGAAGGTACCA
TCAGCATAAGAGGGTACTCAGATGCACGTATTTCACGCGGCCTTGTTGCT
TTGTTTGCACTTGGACTACATGGATGTTCTACGAAAGACGTACTCAGTCT
GAACCTACGTGAGGTGTTGCACAAATCTGATTTGCCTGGAGTCATAGGTT
CATCTCGGATTAATAGTCTCGGGAACATCTTGCGAGCAGCTCGAAAACAA
GTACAGATGCTTACCGAGAACGCTTCCATTTTGCGGAACGATACTGCACA
CATTCTGACCGGAAGATGGAGTGAAAGGCAAGGCGAGGATGTTGCCATTC
TTCTTTCGGGCGGTGTGGACAGCTCAGTTGCAATGCGTCTTGCTCTTGAA
AGTGGTGCTAGGCCTCACCCTTTTTATCTGAAGATATGGCTTGAAGACGA
ACTAGCCCATATGGGGGAATGCCCATGGGAAGAAGATATTGAGTATGCGA
ACGCCGTGTGTAATCAAGTTGGTATTAAGTTACAAGATATCCCGTTTCAA
CGGGCGTACTGGGATGAGGTTGTCTCGTATACCGTTCAAGAAGCTCAAAA
GGGACGGACCCCAAACCCGGACGTAATGTGCAACTCAAGAATAAAGTTTG
GGGCATTCTATGATCGGATTGGAAAGTATTATAAAAAGGTGGTAACAGGG
CACTACGCTCAGACGGCAAGAGATGAAATGGGAAGGGCAGAGCTAAGACT
ATCGCCGGATGAGTTGAAAGACCAGACGTATTTTCTCGCCCATTTGAGGC
AAGATCAGCTTGCGACAGCTCGTTTTCCGGTTGGGAAGCACACAAAGGAA
GAAGTGCGAATGCTAGCCGAACACTACGATCTTCCAAACAAGAATCGCCG
AGATTCGCAAGGAATCTGCTTTCTAGGCAAGCTTAAGTTTGATGACTTTC
TTGGTCATCATCTTGGGCAGAAAAAAGGATCCCTAGTTGAATTTGAAACC
GGTCAAGAACTTGGTCATCATAATGGGTTTTGGTTTTTTACTCTGGGTCA
AAGAAGAGGGGTTGGGTTGTCTGGTGGGCCTTGGTACGTTGTCGCTAAGA
ATGTATCACAGAATATCGTATACGTAAGTAAGGACTACAACAATGTGTCA
AAAGAGCGAAACTGTTTCGAGTTTGACTCCGCCCTTTGGATTTCTGGTGA
ATGGCCGGCAAAACTGCAACATGTAGGCGACAAAATCAAATTGAGAGTGA
AGACAAGACACGGGCCACGATTTCATGACGCCACATTGACAAGGTTGGAC
GATGAAAGGGGTCGCGTAGATCTTGAAGGAAGGGACAAAGGACTGGCACC
TGGTCAATTCTCAGCTTTTTACGATATCGAGGGAAGATGTCTTGGTTCTG
GTGTTATTATGTCTGATGTTTCCATGTCCGATGCACCTGTTGCCATTAAG
AGCTTGCACTACCTTCCCAAGAAACTTCAGGCGCATGTGCGGTGA