Gcaud8757.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8757.t1
Unique Name	Gcaud8757.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:22277..23833 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707902.1
Preferred name	HOM3
PFAMs	AA_kinase,ACT,ACT_7
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00043
KEGG ko	ko:K00928
KEGG Reaction	R00480
KEGG Pathway	ko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG Module	M00016,M00017,M00018,M00033,M00525,M00526,M00527
GOs	GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	1.05e-197
EggNOG OGs	COG0527@1\|root,KOG0456@2759\|Eukaryota
EC	2.7.2.4
Description	aspartate kinase activity
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8757	Gcaud8757	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 22277..23833 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8757.t1.start1	Gcaud8757.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 22277..22279 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8757.t1.CDS1	Gcaud8757.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 22277..23833 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8757.t1.exon1	Gcaud8757.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 22277..23833 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8757.t1.stop1	Gcaud8757.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 23831..23833 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8757.t1	Gcaud8757.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 22277..23833 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+

mRNA sequence

>Gcaud8757.t1 ID=Gcaud8757.t1|Name=Gcaud8757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp
METAFATFLPLDARRCINIQKLPSHRGERPHVARRRCLANNLHRTPVATS
TSPPPIAPPKLEAPTKLDRIVCKFGGSSLADADRLREVTKLVLRQIECSE
KMPIVVLSAMGPSTNELLNAGERALNHGIVDTSSIRFRAYEACESLSLNK
QDLVDPLLHNLDELLVGVKFIKELSPRTLDYLVSFGERLSVRIFAAHLRH
NENIPAEHVDAYDAGFVTDSNFTRAELLEQSFDNVKRFFDSCIKDDHLAV
VTGFIAKDRNGNITTLGRGGSDLTASTIGAALGTSEVQVWKDVDGILSTD
PRIVTEALPIPSISFEEAAEMAFFGAKVLHPIAMQPAMKYNVPVRVKNSY
NPDHPGTVILRERALESANPVTAISVKRNVQIVDIVSTRMLGASGFLAEV
FKCFAFHKVSVDMIATSEVSISMTLDNNVCDSQTLLQLKEDLSSYALVSL
SEKNKAIISLVSDSSRSSSVVGRAVSALDGAGITVLMISQGASKFNISIT
IEAEDANTAVQVIHDEFF*

spliced messenger RNA

>Gcaud8757.t1 ID=Gcaud8757.t1|Name=Gcaud8757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACCGCATTTGCAACCTTCTTACCACTTGATGCTCGACGTTGTAT
AAACATACAAAAGCTCCCTTCACATCGCGGGGAACGTCCCCATGTGGCTA
GAAGAAGGTGTCTTGCGAACAACCTGCACCGCACTCCTGTCGCCACATCC
ACGTCTCCACCCCCTATTGCTCCGCCCAAGCTTGAAGCACCAACGAAGCT
TGACCGCATAGTATGCAAGTTCGGTGGCTCAAGTCTTGCTGACGCCGATC
GTCTCAGAGAGGTGACGAAGCTCGTCTTGAGACAGATCGAATGCTCGGAG
AAGATGCCGATTGTGGTTTTATCTGCTATGGGACCGAGCACGAATGAATT
ATTAAACGCTGGTGAAAGGGCTCTCAATCATGGGATTGTCGATACTTCTT
CCATCCGTTTCCGTGCCTATGAGGCATGCGAAAGCCTTTCTCTTAATAAG
CAGGACCTTGTGGACCCGTTACTGCACAACTTGGATGAACTTTTAGTAGG
CGTTAAGTTTATCAAGGAGCTTAGCCCCCGCACACTGGATTACTTGGTCA
GTTTTGGTGAGCGACTTAGTGTCCGCATTTTTGCTGCGCATCTTCGTCAT
AACGAAAACATACCCGCCGAACATGTTGATGCGTATGACGCTGGCTTTGT
CACGGACTCCAATTTCACTCGTGCAGAACTGCTCGAGCAATCGTTTGACA
ATGTCAAGCGATTCTTTGATTCTTGTATTAAGGATGACCATCTTGCCGTC
GTCACTGGCTTTATCGCGAAAGATCGAAACGGTAACATTACGACTTTAGG
TCGAGGTGGCAGCGACCTTACGGCCTCTACGATAGGCGCCGCGCTCGGCA
CATCTGAAGTTCAAGTGTGGAAAGATGTGGATGGAATTTTGTCCACAGAT
CCTCGTATTGTTACTGAAGCCCTTCCTATCCCATCTATCTCTTTTGAAGA
AGCTGCCGAGATGGCTTTCTTCGGCGCTAAGGTTTTACACCCAATCGCCA
TGCAACCCGCAATGAAGTACAATGTACCTGTCCGTGTGAAGAACAGCTAC
AATCCAGATCATCCTGGAACTGTTATTTTGCGTGAACGAGCCCTTGAGTC
GGCAAATCCGGTCACGGCTATCAGTGTCAAGAGAAATGTTCAGATCGTGG
ATATTGTGAGCACGCGTATGCTAGGTGCATCAGGATTTCTCGCTGAAGTG
TTCAAATGCTTTGCCTTTCACAAGGTTTCCGTTGATATGATCGCTACATC
CGAGGTGTCGATCTCAATGACACTTGACAATAATGTTTGTGACTCTCAGA
CATTGTTACAGTTGAAGGAGGATCTCAGTTCGTACGCTCTTGTATCACTC
TCGGAGAAAAACAAAGCCATCATCTCGCTTGTCTCCGACTCGTCAAGGAG
CAGCAGTGTTGTTGGTCGTGCTGTCTCGGCACTTGATGGGGCTGGTATAA
CGGTGTTAATGATATCTCAAGGTGCGAGCAAGTTTAACATATCCATCACT
ATTGAGGCCGAAGATGCGAATACTGCGGTTCAAGTTATTCATGATGAGTT
CTTCTAG

protein sequence of Gcaud8757.t1

>Gcaud8757.t1 ID=Gcaud8757.t1|Name=Gcaud8757.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=519bp
METAFATFLPLDARRCINIQKLPSHRGERPHVARRRCLANNLHRTPVATS
TSPPPIAPPKLEAPTKLDRIVCKFGGSSLADADRLREVTKLVLRQIECSE
KMPIVVLSAMGPSTNELLNAGERALNHGIVDTSSIRFRAYEACESLSLNK
QDLVDPLLHNLDELLVGVKFIKELSPRTLDYLVSFGERLSVRIFAAHLRH
NENIPAEHVDAYDAGFVTDSNFTRAELLEQSFDNVKRFFDSCIKDDHLAV
VTGFIAKDRNGNITTLGRGGSDLTASTIGAALGTSEVQVWKDVDGILSTD
PRIVTEALPIPSISFEEAAEMAFFGAKVLHPIAMQPAMKYNVPVRVKNSY
NPDHPGTVILRERALESANPVTAISVKRNVQIVDIVSTRMLGASGFLAEV
FKCFAFHKVSVDMIATSEVSISMTLDNNVCDSQTLLQLKEDLSSYALVSL
SEKNKAIISLVSDSSRSSSVVGRAVSALDGAGITVLMISQGASKFNISIT
IEAEDANTAVQVIHDEFF*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8757.t1 ID=Gcaud8757.t1|Name=Gcaud8757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+ (Gracilaria caudata M_176_S67 male)
ATGGAAACCGCATTTGCAACCTTCTTACCACTTGATGCTCGACGTTGTAT
AAACATACAAAAGCTCCCTTCACATCGCGGGGAACGTCCCCATGTGGCTA
GAAGAAGGTGTCTTGCGAACAACCTGCACCGCACTCCTGTCGCCACATCC
ACGTCTCCACCCCCTATTGCTCCGCCCAAGCTTGAAGCACCAACGAAGCT
TGACCGCATAGTATGCAAGTTCGGTGGCTCAAGTCTTGCTGACGCCGATC
GTCTCAGAGAGGTGACGAAGCTCGTCTTGAGACAGATCGAATGCTCGGAG
AAGATGCCGATTGTGGTTTTATCTGCTATGGGACCGAGCACGAATGAATT
ATTAAACGCTGGTGAAAGGGCTCTCAATCATGGGATTGTCGATACTTCTT
CCATCCGTTTCCGTGCCTATGAGGCATGCGAAAGCCTTTCTCTTAATAAG
CAGGACCTTGTGGACCCGTTACTGCACAACTTGGATGAACTTTTAGTAGG
CGTTAAGTTTATCAAGGAGCTTAGCCCCCGCACACTGGATTACTTGGTCA
GTTTTGGTGAGCGACTTAGTGTCCGCATTTTTGCTGCGCATCTTCGTCAT
AACGAAAACATACCCGCCGAACATGTTGATGCGTATGACGCTGGCTTTGT
CACGGACTCCAATTTCACTCGTGCAGAACTGCTCGAGCAATCGTTTGACA
ATGTCAAGCGATTCTTTGATTCTTGTATTAAGGATGACCATCTTGCCGTC
GTCACTGGCTTTATCGCGAAAGATCGAAACGGTAACATTACGACTTTAGG
TCGAGGTGGCAGCGACCTTACGGCCTCTACGATAGGCGCCGCGCTCGGCA
CATCTGAAGTTCAAGTGTGGAAAGATGTGGATGGAATTTTGTCCACAGAT
CCTCGTATTGTTACTGAAGCCCTTCCTATCCCATCTATCTCTTTTGAAGA
AGCTGCCGAGATGGCTTTCTTCGGCGCTAAGGTTTTACACCCAATCGCCA
TGCAACCCGCAATGAAGTACAATGTACCTGTCCGTGTGAAGAACAGCTAC
AATCCAGATCATCCTGGAACTGTTATTTTGCGTGAACGAGCCCTTGAGTC
GGCAAATCCGGTCACGGCTATCAGTGTCAAGAGAAATGTTCAGATCGTGG
ATATTGTGAGCACGCGTATGCTAGGTGCATCAGGATTTCTCGCTGAAGTG
TTCAAATGCTTTGCCTTTCACAAGGTTTCCGTTGATATGATCGCTACATC
CGAGGTGTCGATCTCAATGACACTTGACAATAATGTTTGTGACTCTCAGA
CATTGTTACAGTTGAAGGAGGATCTCAGTTCGTACGCTCTTGTATCACTC
TCGGAGAAAAACAAAGCCATCATCTCGCTTGTCTCCGACTCGTCAAGGAG
CAGCAGTGTTGTTGGTCGTGCTGTCTCGGCACTTGATGGGGCTGGTATAA
CGGTGTTAATGATATCTCAAGGTGCGAGCAAGTTTAACATATCCATCACT
ATTGAGGCCGAAGATGCGAATACTGCGGTTCAAGTTATTCATGATGAGTT
CTTCTAG

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+

>Gcaud8757.t1 ID=Gcaud8757.t1|Name=Gcaud8757.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1557bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:22277..23833+ (Gracilaria caudata M_176_S67 male)
ATGGAAACCGCATTTGCAACCTTCTTACCACTTGATGCTCGACGTTGTAT
AAACATACAAAAGCTCCCTTCACATCGCGGGGAACGTCCCCATGTGGCTA
GAAGAAGGTGTCTTGCGAACAACCTGCACCGCACTCCTGTCGCCACATCC
ACGTCTCCACCCCCTATTGCTCCGCCCAAGCTTGAAGCACCAACGAAGCT
TGACCGCATAGTATGCAAGTTCGGTGGCTCAAGTCTTGCTGACGCCGATC
GTCTCAGAGAGGTGACGAAGCTCGTCTTGAGACAGATCGAATGCTCGGAG
AAGATGCCGATTGTGGTTTTATCTGCTATGGGACCGAGCACGAATGAATT
ATTAAACGCTGGTGAAAGGGCTCTCAATCATGGGATTGTCGATACTTCTT
CCATCCGTTTCCGTGCCTATGAGGCATGCGAAAGCCTTTCTCTTAATAAG
CAGGACCTTGTGGACCCGTTACTGCACAACTTGGATGAACTTTTAGTAGG
CGTTAAGTTTATCAAGGAGCTTAGCCCCCGCACACTGGATTACTTGGTCA
GTTTTGGTGAGCGACTTAGTGTCCGCATTTTTGCTGCGCATCTTCGTCAT
AACGAAAACATACCCGCCGAACATGTTGATGCGTATGACGCTGGCTTTGT
CACGGACTCCAATTTCACTCGTGCAGAACTGCTCGAGCAATCGTTTGACA
ATGTCAAGCGATTCTTTGATTCTTGTATTAAGGATGACCATCTTGCCGTC
GTCACTGGCTTTATCGCGAAAGATCGAAACGGTAACATTACGACTTTAGG
TCGAGGTGGCAGCGACCTTACGGCCTCTACGATAGGCGCCGCGCTCGGCA
CATCTGAAGTTCAAGTGTGGAAAGATGTGGATGGAATTTTGTCCACAGAT
CCTCGTATTGTTACTGAAGCCCTTCCTATCCCATCTATCTCTTTTGAAGA
AGCTGCCGAGATGGCTTTCTTCGGCGCTAAGGTTTTACACCCAATCGCCA
TGCAACCCGCAATGAAGTACAATGTACCTGTCCGTGTGAAGAACAGCTAC
AATCCAGATCATCCTGGAACTGTTATTTTGCGTGAACGAGCCCTTGAGTC
GGCAAATCCGGTCACGGCTATCAGTGTCAAGAGAAATGTTCAGATCGTGG
ATATTGTGAGCACGCGTATGCTAGGTGCATCAGGATTTCTCGCTGAAGTG
TTCAAATGCTTTGCCTTTCACAAGGTTTCCGTTGATATGATCGCTACATC
CGAGGTGTCGATCTCAATGACACTTGACAATAATGTTTGTGACTCTCAGA
CATTGTTACAGTTGAAGGAGGATCTCAGTTCGTACGCTCTTGTATCACTC
TCGGAGAAAAACAAAGCCATCATCTCGCTTGTCTCCGACTCGTCAAGGAG
CAGCAGTGTTGTTGGTCGTGCTGTCTCGGCACTTGATGGGGCTGGTATAA
CGGTGTTAATGATATCTCAAGGTGCGAGCAAGTTTAACATATCCATCACT
ATTGAGGCCGAAGATGCGAATACTGCGGTTCAAGTTATTCATGATGAGTT
CTTCTAG