Gcaud8747.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8747.t1
Unique Name	Gcaud8747.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	569

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:2..1706 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_07499T0
PFAMs	Alk_phosphatase
Max annot lvl	4751\|Fungi
Evalue	2.14e-58
EggNOG OGs	COG1785@1\|root,KOG4126@2759\|Eukaryota,38GD6@33154\|Opisthokonta,3NU5V@4751\|Fungi,1GSSH@112252\|Fungi incertae sedis
Description	Mortierella verticillata NRRL 6337
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8747	Gcaud8747	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 2..1706 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8747.t1.CDS1	Gcaud8747.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 2..1706 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8747.t1.exon1	Gcaud8747.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 2..1706 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8747.t1.start1	Gcaud8747.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 1704..1706 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8747.t1	Gcaud8747.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 2..1706 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:2..1706-
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:2..1706-

mRNA sequence

>Gcaud8747.t1 ID=Gcaud8747.t1|Name=Gcaud8747.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=569bp
MKFSVFILASTTLCAFSLALQRPERHFGCPVGKNVCIYPIDDANIQCETF
FDFQVALHLPENETITDDIRRVMEIRLTLPSGEVLTPESLFGKKPELRNW
TFQNQEFGGILGPVLSQIGGGTFNDTLSQIGGGTLEQILSQIDSGTLEQI
LSQVGEVTFRQLMSQPGGGTLEQLLGQAGGGSLEQLLGQGEGGTLGQLLG
QSGGTNPDQLLIQAGGGSLEETLNQAGKGSLEQLLSQGGADLEQLLSQFG
GGPPQQFLGQGAGGILESFRNQDDGTSEGFNSYAVMYRNVIIDKKYGKGP
VKVTVFARGVTTEVTYIVREPTKRRAKNVVLFVGDGMALPMMAAARLVSR
GMVHGKYKDLLNMEKMPYFGLQNPSGVDSIITDSANSATSMNTGQKSSAS
ALGVYADSGDDDFGHPKQETIAEHIKRKFGMSVGVVTTAEIQDATPAAVW
AHVRRRAEKAAITAQAINGCKDCVLPVQPDVIMGGGGKYFKPDRSVDGSD
MYSNYSTKGYTVTHTRAEMLAAVEDESTEKLLTVSHNGNMEVWLDRNVYT
DNMNDSDNSPTVDGPAPVX

spliced messenger RNA

>Gcaud8747.t1 ID=Gcaud8747.t1|Name=Gcaud8747.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1705bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:2..1706- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTTCTGTCTTCATTCTTGCTTCTACTACGCTATGTGCTTTTTC
CCTAGCCTTACAGAGGCCCGAACGTCATTTTGGATGTCCGGTAGGCAAAA
ACGTTTGCATCTACCCTATTGATGATGCTAACATCCAATGTGAAACTTTC
TTTGACTTCCAGGTCGCTCTTCATCTTCCCGAGAATGAAACAATAACCGA
CGATATCCGTCGCGTTATGGAAATCAGATTGACTCTCCCGTCCGGTGAAG
TTCTCACTCCGGAGTCTCTTTTTGGTAAGAAACCAGAGCTCAGAAACTGG
ACATTTCAAAATCAGGAGTTTGGAGGGATTCTTGGACCAGTTCTAAGTCA
AATTGGCGGCGGGACTTTTAACGACACTCTAAGCCAGATTGGAGGAGGGA
CTCTTGAACAAATTCTGAGTCAGATTGACAGCGGGACTCTTGAACAAATT
CTTAGTCAGGTTGGAGAAGTGACTTTCAGACAACTTATGAGTCAACCCGG
AGGAGGAACTCTTGAACAGCTTTTGGGACAGGCTGGTGGAGGGTCTCTTG
AGCAACTTCTGGGTCAGGGAGAAGGAGGCACTCTAGGACAACTTCTGGGT
CAGTCCGGCGGAACGAATCCTGATCAACTTCTAATTCAGGCTGGTGGAGG
GTCTCTTGAAGAAACATTGAATCAGGCTGGCAAAGGATCCCTCGAACAAC
TTTTGAGTCAAGGTGGAGCGGATCTTGAACAACTTCTAAGCCAATTTGGT
GGAGGGCCTCCTCAACAATTCTTGGGTCAAGGAGCAGGAGGAATCCTCGA
AAGCTTCAGAAACCAGGATGATGGAACGTCAGAAGGCTTCAATTCCTATG
CCGTCATGTACCGTAACGTCATCATTGACAAGAAGTATGGTAAGGGTCCG
GTCAAGGTTACTGTCTTCGCCCGTGGCGTTACCACCGAAGTCACCTACAT
CGTGCGTGAGCCCACCAAGAGACGTGCCAAGAACGTGGTTCTCTTCGTCG
GAGACGGTATGGCGCTCCCCATGATGGCCGCTGCCCGTCTCGTGTCGCGT
GGTATGGTGCACGGAAAGTACAAGGACCTTTTGAATATGGAGAAGATGCC
GTATTTCGGTCTTCAGAACCCGTCTGGTGTTGACTCTATCATCACCGACT
CTGCCAACTCCGCTACCTCTATGAACACCGGACAGAAGTCCTCTGCCAGT
GCTCTTGGTGTGTATGCCGACTCTGGTGATGATGACTTTGGGCACCCGAA
ACAGGAGACCATTGCCGAACACATCAAGCGCAAGTTCGGTATGTCCGTTG
GTGTTGTCACCACTGCTGAGATCCAGGACGCTACTCCGGCCGCTGTATGG
GCTCATGTTCGTCGCCGTGCCGAGAAGGCCGCCATCACTGCTCAGGCTAT
CAACGGTTGCAAGGACTGTGTGTTGCCGGTGCAGCCCGATGTGATCATGG
GAGGTGGTGGCAAGTACTTCAAGCCGGATCGATCTGTCGATGGCTCTGAC
ATGTACTCCAACTATTCCACCAAGGGCTACACCGTCACCCACACCCGTGC
CGAGATGTTGGCGGCTGTGGAAGATGAGAGTACTGAGAAGCTTCTCACTG
TGTCTCACAACGGTAACATGGAAGTGTGGCTTGACAGAAATGTGTACACT
GATAATATGAACGACAGTGACAACTCACCCACTGTTGATGGTCCGGCTCC
AGTGG

protein sequence of Gcaud8747.t1

>Gcaud8747.t1 ID=Gcaud8747.t1|Name=Gcaud8747.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=569bp
MKFSVFILASTTLCAFSLALQRPERHFGCPVGKNVCIYPIDDANIQCETF
FDFQVALHLPENETITDDIRRVMEIRLTLPSGEVLTPESLFGKKPELRNW
TFQNQEFGGILGPVLSQIGGGTFNDTLSQIGGGTLEQILSQIDSGTLEQI
LSQVGEVTFRQLMSQPGGGTLEQLLGQAGGGSLEQLLGQGEGGTLGQLLG
QSGGTNPDQLLIQAGGGSLEETLNQAGKGSLEQLLSQGGADLEQLLSQFG
GGPPQQFLGQGAGGILESFRNQDDGTSEGFNSYAVMYRNVIIDKKYGKGP
VKVTVFARGVTTEVTYIVREPTKRRAKNVVLFVGDGMALPMMAAARLVSR
GMVHGKYKDLLNMEKMPYFGLQNPSGVDSIITDSANSATSMNTGQKSSAS
ALGVYADSGDDDFGHPKQETIAEHIKRKFGMSVGVVTTAEIQDATPAAVW
AHVRRRAEKAAITAQAINGCKDCVLPVQPDVIMGGGGKYFKPDRSVDGSD
MYSNYSTKGYTVTHTRAEMLAAVEDESTEKLLTVSHNGNMEVWLDRNVYT
DNMNDSDNSPTVDGPAPVX

mRNA from alignment at NODE_40_length_68803_cov_4.393963:2..1706-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8747.t1 ID=Gcaud8747.t1|Name=Gcaud8747.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1705bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:2..1706- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTTCTGTCTTCATTCTTGCTTCTACTACGCTATGTGCTTTTTC
CCTAGCCTTACAGAGGCCCGAACGTCATTTTGGATGTCCGGTAGGCAAAA
ACGTTTGCATCTACCCTATTGATGATGCTAACATCCAATGTGAAACTTTC
TTTGACTTCCAGGTCGCTCTTCATCTTCCCGAGAATGAAACAATAACCGA
CGATATCCGTCGCGTTATGGAAATCAGATTGACTCTCCCGTCCGGTGAAG
TTCTCACTCCGGAGTCTCTTTTTGGTAAGAAACCAGAGCTCAGAAACTGG
ACATTTCAAAATCAGGAGTTTGGAGGGATTCTTGGACCAGTTCTAAGTCA
AATTGGCGGCGGGACTTTTAACGACACTCTAAGCCAGATTGGAGGAGGGA
CTCTTGAACAAATTCTGAGTCAGATTGACAGCGGGACTCTTGAACAAATT
CTTAGTCAGGTTGGAGAAGTGACTTTCAGACAACTTATGAGTCAACCCGG
AGGAGGAACTCTTGAACAGCTTTTGGGACAGGCTGGTGGAGGGTCTCTTG
AGCAACTTCTGGGTCAGGGAGAAGGAGGCACTCTAGGACAACTTCTGGGT
CAGTCCGGCGGAACGAATCCTGATCAACTTCTAATTCAGGCTGGTGGAGG
GTCTCTTGAAGAAACATTGAATCAGGCTGGCAAAGGATCCCTCGAACAAC
TTTTGAGTCAAGGTGGAGCGGATCTTGAACAACTTCTAAGCCAATTTGGT
GGAGGGCCTCCTCAACAATTCTTGGGTCAAGGAGCAGGAGGAATCCTCGA
AAGCTTCAGAAACCAGGATGATGGAACGTCAGAAGGCTTCAATTCCTATG
CCGTCATGTACCGTAACGTCATCATTGACAAGAAGTATGGTAAGGGTCCG
GTCAAGGTTACTGTCTTCGCCCGTGGCGTTACCACCGAAGTCACCTACAT
CGTGCGTGAGCCCACCAAGAGACGTGCCAAGAACGTGGTTCTCTTCGTCG
GAGACGGTATGGCGCTCCCCATGATGGCCGCTGCCCGTCTCGTGTCGCGT
GGTATGGTGCACGGAAAGTACAAGGACCTTTTGAATATGGAGAAGATGCC
GTATTTCGGTCTTCAGAACCCGTCTGGTGTTGACTCTATCATCACCGACT
CTGCCAACTCCGCTACCTCTATGAACACCGGACAGAAGTCCTCTGCCAGT
GCTCTTGGTGTGTATGCCGACTCTGGTGATGATGACTTTGGGCACCCGAA
ACAGGAGACCATTGCCGAACACATCAAGCGCAAGTTCGGTATGTCCGTTG
GTGTTGTCACCACTGCTGAGATCCAGGACGCTACTCCGGCCGCTGTATGG
GCTCATGTTCGTCGCCGTGCCGAGAAGGCCGCCATCACTGCTCAGGCTAT
CAACGGTTGCAAGGACTGTGTGTTGCCGGTGCAGCCCGATGTGATCATGG
GAGGTGGTGGCAAGTACTTCAAGCCGGATCGATCTGTCGATGGCTCTGAC
ATGTACTCCAACTATTCCACCAAGGGCTACACCGTCACCCACACCCGTGC
CGAGATGTTGGCGGCTGTGGAAGATGAGAGTACTGAGAAGCTTCTCACTG
TGTCTCACAACGGTAACATGGAAGTGTGGCTTGACAGAAATGTGTACACT
GATAATATGAACGACAGTGACAACTCACCCACTGTTGATGGTCCGGCTCC
AGTGG

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:2..1706-

>Gcaud8747.t1 ID=Gcaud8747.t1|Name=Gcaud8747.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1705bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:2..1706- (Gracilaria caudata M_176_S67 male)
ATGAAGTTTTCTGTCTTCATTCTTGCTTCTACTACGCTATGTGCTTTTTC
CCTAGCCTTACAGAGGCCCGAACGTCATTTTGGATGTCCGGTAGGCAAAA
ACGTTTGCATCTACCCTATTGATGATGCTAACATCCAATGTGAAACTTTC
TTTGACTTCCAGGTCGCTCTTCATCTTCCCGAGAATGAAACAATAACCGA
CGATATCCGTCGCGTTATGGAAATCAGATTGACTCTCCCGTCCGGTGAAG
TTCTCACTCCGGAGTCTCTTTTTGGTAAGAAACCAGAGCTCAGAAACTGG
ACATTTCAAAATCAGGAGTTTGGAGGGATTCTTGGACCAGTTCTAAGTCA
AATTGGCGGCGGGACTTTTAACGACACTCTAAGCCAGATTGGAGGAGGGA
CTCTTGAACAAATTCTGAGTCAGATTGACAGCGGGACTCTTGAACAAATT
CTTAGTCAGGTTGGAGAAGTGACTTTCAGACAACTTATGAGTCAACCCGG
AGGAGGAACTCTTGAACAGCTTTTGGGACAGGCTGGTGGAGGGTCTCTTG
AGCAACTTCTGGGTCAGGGAGAAGGAGGCACTCTAGGACAACTTCTGGGT
CAGTCCGGCGGAACGAATCCTGATCAACTTCTAATTCAGGCTGGTGGAGG
GTCTCTTGAAGAAACATTGAATCAGGCTGGCAAAGGATCCCTCGAACAAC
TTTTGAGTCAAGGTGGAGCGGATCTTGAACAACTTCTAAGCCAATTTGGT
GGAGGGCCTCCTCAACAATTCTTGGGTCAAGGAGCAGGAGGAATCCTCGA
AAGCTTCAGAAACCAGGATGATGGAACGTCAGAAGGCTTCAATTCCTATG
CCGTCATGTACCGTAACGTCATCATTGACAAGAAGTATGGTAAGGGTCCG
GTCAAGGTTACTGTCTTCGCCCGTGGCGTTACCACCGAAGTCACCTACAT
CGTGCGTGAGCCCACCAAGAGACGTGCCAAGAACGTGGTTCTCTTCGTCG
GAGACGGTATGGCGCTCCCCATGATGGCCGCTGCCCGTCTCGTGTCGCGT
GGTATGGTGCACGGAAAGTACAAGGACCTTTTGAATATGGAGAAGATGCC
GTATTTCGGTCTTCAGAACCCGTCTGGTGTTGACTCTATCATCACCGACT
CTGCCAACTCCGCTACCTCTATGAACACCGGACAGAAGTCCTCTGCCAGT
GCTCTTGGTGTGTATGCCGACTCTGGTGATGATGACTTTGGGCACCCGAA
ACAGGAGACCATTGCCGAACACATCAAGCGCAAGTTCGGTATGTCCGTTG
GTGTTGTCACCACTGCTGAGATCCAGGACGCTACTCCGGCCGCTGTATGG
GCTCATGTTCGTCGCCGTGCCGAGAAGGCCGCCATCACTGCTCAGGCTAT
CAACGGTTGCAAGGACTGTGTGTTGCCGGTGCAGCCCGATGTGATCATGG
GAGGTGGTGGCAAGTACTTCAAGCCGGATCGATCTGTCGATGGCTCTGAC
ATGTACTCCAACTATTCCACCAAGGGCTACACCGTCACCCACACCCGTGC
CGAGATGTTGGCGGCTGTGGAAGATGAGAGTACTGAGAAGCTTCTCACTG
TGTCTCACAACGGTAACATGGAAGTGTGGCTTGACAGAAATGTGTACACT
GATAATATGAACGACAGTGACAACTCACCCACTGTTGATGGTCCGGCTCC
AGTGG