Gcaud8758.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8758.t1
Unique Name	Gcaud8758.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	619

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:24121..25977 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK124CT
Preferred name	pex5
PFAMs	TPR_16,TPR_17,TPR_2,TPR_8
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13342
KEGG TC	3.A.20.1
KEGG Pathway	ko04146,map04146
GOs	GO:0000268,GO:0003674,GO:0005048,GO:0005052,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016558,GO:0016560,GO:0017038,GO:0031090,GO:0031903,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805
Evalue	9.05e-26
EggNOG OGs	KOG1125@1\|root,KOG1125@2759\|Eukaryota
Description	peroxisome matrix targeting signal-1 binding
COG category	S
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8758	Gcaud8758	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 24121..25977 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8758.t1.stop1	Gcaud8758.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 24121..24123 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8758.t1.CDS1	Gcaud8758.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 24121..25977 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8758.t1.exon1	Gcaud8758.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 24121..25977 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8758.t1.start1	Gcaud8758.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 25975..25977 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8758.t1	Gcaud8758.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 24121..25977 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:24121..25977-
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:24121..25977-

mRNA sequence

>Gcaud8758.t1 ID=Gcaud8758.t1|Name=Gcaud8758.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=619bp
MSLRDLTSGTSCAAGAASSSSNPLAALTDAILPKSATPASRFRAAAASQS
ASSGSSITREEQALIQGHLPPGPVLNRPVPPSLPPHPPASAPLVYDKHTF
SWPFSGYAAPIGAPEIGAATDVFEAAFRNASVLQHMPPSAYRPLSHGRRY
RPHHFSHMPLPPMSQFAAAPPPQLQRAFASSDVEQYVKSLAEGNVSDDLN
NLSLSDVSAKAAASSSSHAVKEQQESQARKEKNAVERPFLDTENLGDEFT
SFENEDLADFADAVNGTTIPERFAFSGDIEKYFERWIRSDGTERYMFEHR
QQNDSKRSAEKALEEGIRNREIGRLAMAIKCFEEALGHTLEGRLSKPSRA
TAWYLLGVSQAETDDDVRAIQAFQEGLSEWKSESVGERREDNPYLWQSLI
ALSVSYTNELEVGKALRHMSEWYNFWSARDSSDAESGVPASIRQAEDTGA
GVLLEQLRRAASQNPNDTDLFLVMGILHNLRQEFDNAAIAFRHAITLRSE
DPSIWNKLGATLANGGDSENALRAYRKAVDLNPSLLRAWVNVGTAYSNRG
EFTKAARYYLKAICMAELDETREVRRESSSMSHVWEFLGASLISLGRTDL
QSLADARDLQALRAHFNL*

spliced messenger RNA

>Gcaud8758.t1 ID=Gcaud8758.t1|Name=Gcaud8758.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:24121..25977- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTACGCGACCTCACTTCCGGCACCTCCTGCGCCGCGGGGGCCGC
GTCCTCCTCGTCGAATCCACTAGCCGCCCTCACCGATGCAATCCTCCCCA
AATCCGCCACTCCCGCCTCCCGTTTCCGCGCCGCCGCCGCTTCGCAATCT
GCCAGCAGCGGCAGCAGCATAACTCGCGAAGAACAAGCTCTCATTCAAGG
ACACCTACCGCCAGGTCCGGTTTTGAATCGTCCTGTGCCGCCATCGCTGC
CGCCACATCCCCCGGCCTCGGCGCCTCTTGTGTATGACAAACATACATTT
TCATGGCCGTTTTCTGGCTACGCAGCGCCGATCGGAGCGCCCGAAATTGG
TGCCGCTACCGACGTGTTTGAGGCGGCGTTTAGAAATGCTTCTGTTCTGC
AGCACATGCCGCCTTCCGCGTATCGACCACTTTCGCATGGTCGTCGATAC
CGACCGCATCATTTCTCCCATATGCCGCTGCCTCCCATGTCCCAATTTGC
AGCCGCTCCGCCACCACAGCTTCAGAGAGCGTTTGCGTCTTCGGATGTCG
AGCAGTATGTGAAAAGTCTGGCAGAAGGCAATGTCAGCGACGATTTGAAT
AATCTGTCCCTCTCTGATGTCTCTGCAAAAGCTGCCGCGTCTTCTTCTTC
ACACGCTGTCAAGGAGCAACAAGAGTCACAAGCCCGAAAAGAAAAGAATG
CAGTAGAACGGCCCTTCCTCGACACTGAGAATTTGGGAGACGAATTCACG
TCGTTTGAAAATGAGGACCTTGCAGATTTTGCAGATGCTGTCAATGGAAC
TACAATTCCAGAACGATTTGCCTTCAGTGGTGATATCGAGAAGTACTTTG
AAAGATGGATTCGGAGTGATGGTACGGAGCGCTATATGTTTGAGCACCGA
CAACAAAACGATTCAAAAAGATCGGCTGAAAAGGCCTTAGAAGAGGGCAT
TAGAAATCGCGAAATTGGTCGTTTGGCAATGGCCATTAAGTGCTTTGAGG
AGGCGCTTGGTCATACCCTGGAAGGTCGCCTTTCAAAGCCTTCGCGAGCA
ACAGCCTGGTACTTGCTGGGTGTATCACAGGCAGAAACAGATGACGATGT
TCGTGCAATACAGGCTTTTCAGGAGGGTCTCTCTGAGTGGAAAAGCGAGT
CTGTGGGAGAGAGAAGGGAAGACAATCCGTACCTATGGCAATCTCTCATT
GCTCTTTCTGTTAGCTATACAAACGAACTGGAAGTTGGTAAGGCGCTGCG
GCACATGTCTGAGTGGTACAATTTCTGGAGTGCACGGGATAGTAGCGATG
CAGAGAGCGGCGTTCCAGCCTCTATACGACAGGCTGAAGACACCGGTGCT
GGGGTGCTCTTGGAACAACTCCGACGGGCTGCCTCTCAGAATCCGAATGA
CACAGATTTGTTCCTTGTTATGGGTATCTTGCATAATCTACGACAAGAAT
TCGACAACGCTGCCATTGCATTTCGTCATGCTATCACGCTTCGTTCGGAG
GATCCTAGCATCTGGAACAAATTAGGAGCCACACTAGCAAACGGCGGTGA
CAGTGAAAACGCTTTGCGAGCGTACAGAAAGGCGGTTGATCTAAATCCTT
CGTTATTAAGAGCATGGGTCAATGTGGGAACGGCCTATTCGAACCGTGGG
GAGTTTACAAAAGCCGCACGATACTATCTCAAGGCAATATGTATGGCGGA
ACTGGACGAGACCCGCGAGGTTCGTAGAGAAAGCAGCAGCATGTCGCATG
TATGGGAGTTTCTAGGAGCATCTTTGATTTCTCTGGGACGAACTGACCTG
CAGAGCCTTGCCGACGCAAGAGATCTTCAAGCGCTACGTGCTCATTTCAA
TCTCTAG

protein sequence of Gcaud8758.t1

>Gcaud8758.t1 ID=Gcaud8758.t1|Name=Gcaud8758.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=619bp
MSLRDLTSGTSCAAGAASSSSNPLAALTDAILPKSATPASRFRAAAASQS
ASSGSSITREEQALIQGHLPPGPVLNRPVPPSLPPHPPASAPLVYDKHTF
SWPFSGYAAPIGAPEIGAATDVFEAAFRNASVLQHMPPSAYRPLSHGRRY
RPHHFSHMPLPPMSQFAAAPPPQLQRAFASSDVEQYVKSLAEGNVSDDLN
NLSLSDVSAKAAASSSSHAVKEQQESQARKEKNAVERPFLDTENLGDEFT
SFENEDLADFADAVNGTTIPERFAFSGDIEKYFERWIRSDGTERYMFEHR
QQNDSKRSAEKALEEGIRNREIGRLAMAIKCFEEALGHTLEGRLSKPSRA
TAWYLLGVSQAETDDDVRAIQAFQEGLSEWKSESVGERREDNPYLWQSLI
ALSVSYTNELEVGKALRHMSEWYNFWSARDSSDAESGVPASIRQAEDTGA
GVLLEQLRRAASQNPNDTDLFLVMGILHNLRQEFDNAAIAFRHAITLRSE
DPSIWNKLGATLANGGDSENALRAYRKAVDLNPSLLRAWVNVGTAYSNRG
EFTKAARYYLKAICMAELDETREVRRESSSMSHVWEFLGASLISLGRTDL
QSLADARDLQALRAHFNL*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:24121..25977-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8758.t1 ID=Gcaud8758.t1|Name=Gcaud8758.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:24121..25977- (Gracilaria caudata M_176_S67 male)
ATGTCTCTACGCGACCTCACTTCCGGCACCTCCTGCGCCGCGGGGGCCGC
GTCCTCCTCGTCGAATCCACTAGCCGCCCTCACCGATGCAATCCTCCCCA
AATCCGCCACTCCCGCCTCCCGTTTCCGCGCCGCCGCCGCTTCGCAATCT
GCCAGCAGCGGCAGCAGCATAACTCGCGAAGAACAAGCTCTCATTCAAGG
ACACCTACCGCCAGGTCCGGTTTTGAATCGTCCTGTGCCGCCATCGCTGC
CGCCACATCCCCCGGCCTCGGCGCCTCTTGTGTATGACAAACATACATTT
TCATGGCCGTTTTCTGGCTACGCAGCGCCGATCGGAGCGCCCGAAATTGG
TGCCGCTACCGACGTGTTTGAGGCGGCGTTTAGAAATGCTTCTGTTCTGC
AGCACATGCCGCCTTCCGCGTATCGACCACTTTCGCATGGTCGTCGATAC
CGACCGCATCATTTCTCCCATATGCCGCTGCCTCCCATGTCCCAATTTGC
AGCCGCTCCGCCACCACAGCTTCAGAGAGCGTTTGCGTCTTCGGATGTCG
AGCAGTATGTGAAAAGTCTGGCAGAAGGCAATGTCAGCGACGATTTGAAT
AATCTGTCCCTCTCTGATGTCTCTGCAAAAGCTGCCGCGTCTTCTTCTTC
ACACGCTGTCAAGGAGCAACAAGAGTCACAAGCCCGAAAAGAAAAGAATG
CAGTAGAACGGCCCTTCCTCGACACTGAGAATTTGGGAGACGAATTCACG
TCGTTTGAAAATGAGGACCTTGCAGATTTTGCAGATGCTGTCAATGGAAC
TACAATTCCAGAACGATTTGCCTTCAGTGGTGATATCGAGAAGTACTTTG
AAAGATGGATTCGGAGTGATGGTACGGAGCGCTATATGTTTGAGCACCGA
CAACAAAACGATTCAAAAAGATCGGCTGAAAAGGCCTTAGAAGAGGGCAT
TAGAAATCGCGAAATTGGTCGTTTGGCAATGGCCATTAAGTGCTTTGAGG
AGGCGCTTGGTCATACCCTGGAAGGTCGCCTTTCAAAGCCTTCGCGAGCA
ACAGCCTGGTACTTGCTGGGTGTATCACAGGCAGAAACAGATGACGATGT
TCGTGCAATACAGGCTTTTCAGGAGGGTCTCTCTGAGTGGAAAAGCGAGT
CTGTGGGAGAGAGAAGGGAAGACAATCCGTACCTATGGCAATCTCTCATT
GCTCTTTCTGTTAGCTATACAAACGAACTGGAAGTTGGTAAGGCGCTGCG
GCACATGTCTGAGTGGTACAATTTCTGGAGTGCACGGGATAGTAGCGATG
CAGAGAGCGGCGTTCCAGCCTCTATACGACAGGCTGAAGACACCGGTGCT
GGGGTGCTCTTGGAACAACTCCGACGGGCTGCCTCTCAGAATCCGAATGA
CACAGATTTGTTCCTTGTTATGGGTATCTTGCATAATCTACGACAAGAAT
TCGACAACGCTGCCATTGCATTTCGTCATGCTATCACGCTTCGTTCGGAG
GATCCTAGCATCTGGAACAAATTAGGAGCCACACTAGCAAACGGCGGTGA
CAGTGAAAACGCTTTGCGAGCGTACAGAAAGGCGGTTGATCTAAATCCTT
CGTTATTAAGAGCATGGGTCAATGTGGGAACGGCCTATTCGAACCGTGGG
GAGTTTACAAAAGCCGCACGATACTATCTCAAGGCAATATGTATGGCGGA
ACTGGACGAGACCCGCGAGGTTCGTAGAGAAAGCAGCAGCATGTCGCATG
TATGGGAGTTTCTAGGAGCATCTTTGATTTCTCTGGGACGAACTGACCTG
CAGAGCCTTGCCGACGCAAGAGATCTTCAAGCGCTACGTGCTCATTTCAA
TCTCTAG

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:24121..25977-

>Gcaud8758.t1 ID=Gcaud8758.t1|Name=Gcaud8758.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1857bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:24121..25977- (Gracilaria caudata M_176_S67 male)
ATGTCTCTACGCGACCTCACTTCCGGCACCTCCTGCGCCGCGGGGGCCGC
GTCCTCCTCGTCGAATCCACTAGCCGCCCTCACCGATGCAATCCTCCCCA
AATCCGCCACTCCCGCCTCCCGTTTCCGCGCCGCCGCCGCTTCGCAATCT
GCCAGCAGCGGCAGCAGCATAACTCGCGAAGAACAAGCTCTCATTCAAGG
ACACCTACCGCCAGGTCCGGTTTTGAATCGTCCTGTGCCGCCATCGCTGC
CGCCACATCCCCCGGCCTCGGCGCCTCTTGTGTATGACAAACATACATTT
TCATGGCCGTTTTCTGGCTACGCAGCGCCGATCGGAGCGCCCGAAATTGG
TGCCGCTACCGACGTGTTTGAGGCGGCGTTTAGAAATGCTTCTGTTCTGC
AGCACATGCCGCCTTCCGCGTATCGACCACTTTCGCATGGTCGTCGATAC
CGACCGCATCATTTCTCCCATATGCCGCTGCCTCCCATGTCCCAATTTGC
AGCCGCTCCGCCACCACAGCTTCAGAGAGCGTTTGCGTCTTCGGATGTCG
AGCAGTATGTGAAAAGTCTGGCAGAAGGCAATGTCAGCGACGATTTGAAT
AATCTGTCCCTCTCTGATGTCTCTGCAAAAGCTGCCGCGTCTTCTTCTTC
ACACGCTGTCAAGGAGCAACAAGAGTCACAAGCCCGAAAAGAAAAGAATG
CAGTAGAACGGCCCTTCCTCGACACTGAGAATTTGGGAGACGAATTCACG
TCGTTTGAAAATGAGGACCTTGCAGATTTTGCAGATGCTGTCAATGGAAC
TACAATTCCAGAACGATTTGCCTTCAGTGGTGATATCGAGAAGTACTTTG
AAAGATGGATTCGGAGTGATGGTACGGAGCGCTATATGTTTGAGCACCGA
CAACAAAACGATTCAAAAAGATCGGCTGAAAAGGCCTTAGAAGAGGGCAT
TAGAAATCGCGAAATTGGTCGTTTGGCAATGGCCATTAAGTGCTTTGAGG
AGGCGCTTGGTCATACCCTGGAAGGTCGCCTTTCAAAGCCTTCGCGAGCA
ACAGCCTGGTACTTGCTGGGTGTATCACAGGCAGAAACAGATGACGATGT
TCGTGCAATACAGGCTTTTCAGGAGGGTCTCTCTGAGTGGAAAAGCGAGT
CTGTGGGAGAGAGAAGGGAAGACAATCCGTACCTATGGCAATCTCTCATT
GCTCTTTCTGTTAGCTATACAAACGAACTGGAAGTTGGTAAGGCGCTGCG
GCACATGTCTGAGTGGTACAATTTCTGGAGTGCACGGGATAGTAGCGATG
CAGAGAGCGGCGTTCCAGCCTCTATACGACAGGCTGAAGACACCGGTGCT
GGGGTGCTCTTGGAACAACTCCGACGGGCTGCCTCTCAGAATCCGAATGA
CACAGATTTGTTCCTTGTTATGGGTATCTTGCATAATCTACGACAAGAAT
TCGACAACGCTGCCATTGCATTTCGTCATGCTATCACGCTTCGTTCGGAG
GATCCTAGCATCTGGAACAAATTAGGAGCCACACTAGCAAACGGCGGTGA
CAGTGAAAACGCTTTGCGAGCGTACAGAAAGGCGGTTGATCTAAATCCTT
CGTTATTAAGAGCATGGGTCAATGTGGGAACGGCCTATTCGAACCGTGGG
GAGTTTACAAAAGCCGCACGATACTATCTCAAGGCAATATGTATGGCGGA
ACTGGACGAGACCCGCGAGGTTCGTAGAGAAAGCAGCAGCATGTCGCATG
TATGGGAGTTTCTAGGAGCATCTTTGATTTCTCTGGGACGAACTGACCTG
CAGAGCCTTGCCGACGCAAGAGATCTTCAAGCGCTACGTGCTCATTTCAA
TCTCTAG