Gcaud8754.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8754.t1
Unique Name	Gcaud8754.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	311

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:16368..18855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8754	Gcaud8754	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 16368..18855 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8754.t1	Gcaud8754.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 16368..18855 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8754.t1.start1	Gcaud8754.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 16368..16370 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8754.t1.CDS1	Gcaud8754.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 16368..17159 +
Gcaud8754.t1.CDS2	Gcaud8754.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 18624..18737 +
Gcaud8754.t1.CDS3	Gcaud8754.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 18829..18855 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8754.t1.exon1	Gcaud8754.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 16368..17159 +
Gcaud8754.t1.exon2	Gcaud8754.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 18624..18737 +
Gcaud8754.t1.exon3	Gcaud8754.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 18829..18855 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8754.t1.intron1	Gcaud8754.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_40_length_68803_cov_4.393963 17160..18623 +
Gcaud8754.t1.intron2	Gcaud8754.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_40_length_68803_cov_4.393963 18738..18828 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8754.t1.stop1	Gcaud8754.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 18853..18855 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+

mRNA sequence

>Gcaud8754.t1 ID=Gcaud8754.t1|Name=Gcaud8754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp
MGRGKLTRLSLVQKIRLRHEEVKRWRKKCRVKKIQPNVIDEIIKGSPRTP
SQALSFINNARSIGFNPANFSPVLCKTVINRNLQRLLLGEARALLPNAGR
GHVTSKEVADVSGRAVESKYKICSRPYLPGVKEVAEIAHEALHNAVHQFE
RENRAKLDSKEPVALGAWFDKTTENDQPIRITIMHIGPKEKAHISRRRDR
FPFWGAAVLCLQEKKNPDSGITLHNDRPFDKAWFLQDGDMMIITPKSVQS
VVITATNREAHALINAFVRKHRLVEPAFAITAGPRLLPSVRRTNVEAVTS
ATVPELRCVM*

spliced messenger RNA

>Gcaud8754.t1 ID=Gcaud8754.t1|Name=Gcaud8754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=933bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGAGGGAAGCTCACGCGACTTTCTCTCGTACAGAAGATTCGACT
GCGACACGAGGAGGTTAAACGATGGCGAAAGAAATGCCGAGTCAAGAAAA
TTCAGCCCAATGTCATCGACGAAATCATAAAAGGATCGCCAAGAACGCCT
TCTCAAGCCCTTTCGTTTATTAATAATGCCCGCTCTATAGGTTTCAACCC
CGCCAATTTCTCTCCAGTCTTGTGTAAGACCGTAATCAACAGAAACTTGC
AGCGCTTGTTATTAGGGGAAGCGAGGGCTCTATTACCGAACGCGGGTCGC
GGACATGTGACGTCAAAGGAGGTAGCAGATGTCTCTGGTCGTGCCGTCGA
AAGCAAGTACAAGATTTGTTCTAGACCGTACTTGCCTGGGGTTAAAGAAG
TGGCCGAAATTGCCCACGAGGCATTGCACAATGCTGTGCATCAGTTTGAG
CGCGAAAACCGCGCAAAGCTGGACAGCAAAGAGCCTGTCGCGCTGGGCGC
TTGGTTTGATAAAACGACGGAGAATGACCAACCAATACGTATTACCATCA
TGCATATTGGTCCCAAGGAGAAAGCCCATATTTCTCGTCGCAGAGACAGA
TTCCCGTTCTGGGGTGCTGCAGTTCTTTGCCTTCAAGAGAAAAAAAATCC
TGACTCGGGCATTACTTTACATAACGACCGCCCCTTTGACAAGGCCTGGT
TCCTGCAAGATGGTGACATGATGATTATCACCCCTAAATCAGTACAATCA
GTCGTCATAACAGCAACTAACAGAGAAGCTCACGCATTGATCAATGCGTT
TGTACGCAAGCACAGGCTGGTCGAACCTGCCTTCGCTATTACGGCGGGTC
CGCGTCTTCTACCCAGTGTGAGACGTACGAATGTGGAAGCGGTTACGTCT
GCGACTGTGCCGGAACTCAGATGTGTGATGTAA

protein sequence of Gcaud8754.t1

>Gcaud8754.t1 ID=Gcaud8754.t1|Name=Gcaud8754.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=311bp
MGRGKLTRLSLVQKIRLRHEEVKRWRKKCRVKKIQPNVIDEIIKGSPRTP
SQALSFINNARSIGFNPANFSPVLCKTVINRNLQRLLLGEARALLPNAGR
GHVTSKEVADVSGRAVESKYKICSRPYLPGVKEVAEIAHEALHNAVHQFE
RENRAKLDSKEPVALGAWFDKTTENDQPIRITIMHIGPKEKAHISRRRDR
FPFWGAAVLCLQEKKNPDSGITLHNDRPFDKAWFLQDGDMMIITPKSVQS
VVITATNREAHALINAFVRKHRLVEPAFAITAGPRLLPSVRRTNVEAVTS
ATVPELRCVM*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8754.t1 ID=Gcaud8754.t1|Name=Gcaud8754.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2488bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+ (Gracilaria caudata M_176_S67 male)
ATGGGAAGAGGGAAGCTCACGCGACTTTCTCTCGTACAGAAGATTCGACT
GCGACACGAGGAGGTTAAACGATGGCGAAAGAAATGCCGAGTCAAGAAAA
TTCAGCCCAATGTCATCGACGAAATCATAAAAGGATCGCCAAGAACGCCT
TCTCAAGCCCTTTCGTTTATTAATAATGCCCGCTCTATAGGTTTCAACCC
CGCCAATTTCTCTCCAGTCTTGTGTAAGACCGTAATCAACAGAAACTTGC
AGCGCTTGTTATTAGGGGAAGCGAGGGCTCTATTACCGAACGCGGGTCGC
GGACATGTGACGTCAAAGGAGGTAGCAGATGTCTCTGGTCGTGCCGTCGA
AAGCAAGTACAAGATTTGTTCTAGACCGTACTTGCCTGGGGTTAAAGAAG
TGGCCGAAATTGCCCACGAGGCATTGCACAATGCTGTGCATCAGTTTGAG
CGCGAAAACCGCGCAAAGCTGGACAGCAAAGAGCCTGTCGCGCTGGGCGC
TTGGTTTGATAAAACGACGGAGAATGACCAACCAATACGTATTACCATCA
TGCATATTGGTCCCAAGGAGAAAGCCCATATTTCTCGTCGCAGAGACAGA
TTCCCGTTCTGGGGTGCTGCAGTTCTTTGCCTTCAAGAGAAAAAAAATCC
TGACTCGGGCATTACTTTACATAACGACCGCCCCTTTGACAAGGCCTGGT
TCCTGCAAGATGGTGACATGATGATTATCACCCCTAAATCAGTACAATCA
GTCGTCATAACAGCAACTAACAGAGAAGCTCACGCATTGATCGTATGGTT
TTGATATACCGCTTCGCCTCTTCTACAACATCTTCCGCCACTACCAGAAG
AAACATCGAAGTCAATCAGTGCCAAGTCGACCCACTCTGTGCTTCATCAT
CAGCGGAAGAGCCAGACATCTTCAGCTGTTCCAGAGTCACTCCTGTGCCC
AATATTTCTGTATAGTATCACATTTGCAAATAATAGGAAGTTGTTCTCGT
TTTCGAACTTGATAACCACCGTTCGACTAGTTTTTGTTTTCTTCTTCAGA
TCTAGTCAAATAGTTCCTCCTTCTGTCAGAACTGTACCAGTAGATCTCGA
AGTTTAGTTTTAGTTTGTCCAAAGAGACCGTTCCACTCTGGTGTTCCCAG
AAGAAGACACCAAACACACACTTATTGTTTCGCGCTCCTTTTCCACCAAA
CATCCTTCATGTCTTTTGAGTGATGTCCTCAAAACTATGGCTGCCTTTGA
TCAACGACTGTCTTCTTTGCCGAGTAAAACTGCGGAGGAAAAGGATACCG
CTCACTCCATCACATCTCCGGATTGCGAGGTTGTTTTGCTCATAAGATGC
AAGAAAGAAGCAATCGTGATTTCCTCAGAACCAGTAAGAGTTAAGCAAGT
TTACCGTACAAGGATAGAGGGATACAGAGTAACCCTTACGTGCCGTCCCA
CTTTACGCTTCTCGCACCATTTACGCAATTCTGTATAATGTTACGCTCTT
TCGTCTCCGAAGCAGCACACCAAAACGTATTCCGAATTGGACCACAAAGA
ACAAGAGAGCGTCGTTGATATCGGAAATGTGACATAATTTTGAGCCCACA
TGCCCAGAGGTCAAGCGATGGTCTTCAACTGTCTTCAAAGGGAAACCTAA
TTTAAAGCCCCGCCACGATATCGCAGAAAGGTGTCGTGTGTCCGCGTAGA
AGCGGTGTTGTTTACGGTATGACAGACACATTGCAACCCTCTAAACTGTA
GTGTAGCCACCACTTGGGGTCCGTGGCGGAAGCCAGCCAGCGCTTGTGTG
TAGGAATTGGGGTTCTAACTCTCCTCAACTTTTCGAGCGCACGCCTAACA
CTGTCGTTGCATGCCCAAACTTCGACTGTCCAGCGGCCTGATGCACTCAG
CTTCCATCATGCGGAATCAATAGCCATACCATTTTCCGCCTCCTCGCTAT
TTCACAGCTGCGATTGAGGGTTGTTCCCATGATGCTAGCGGCATTGCGAG
TGTCTTCGAAGCGACACTCAGATCCTTTCCGCACACCAGTCACTATGACC
GTTGCGCTACCTTGCGTGCTTTCTTGCTACTTAAGGCTCGCATCTTCCCG
CTCTGCTTCGACTGAAGCATCCATCAGTTTCCCAACATTTCCAAGTTCGA
ACAAGCGCTGCACTCATACTCTCACTGTTCAATATGATCTTCCACACTTT
CATCATAACCGCATTGTTCACCTTGGTGTCCGCAAACTGCATATACACTG
ATACAGAATGCGTTTGTACGCAAGCACAGGCTGGTCGAACCTGCCTTCGC
TATTACGGCGGGTCCGCGTCTTCTACCCAGTGTGAGACGTACGAATGTGG
AAGCGGTTACGTCTGCGACTGTATGTGCATTTCCATTCACCCTGTTCGTC
TTCATAACCATTTTATACCCACAGAATCTAACCTTTGATGCGTCTTCCGC
TAATCTCGCAGGTGCCGGAACTCAGATGTGTGATGTAA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+

>Gcaud8754.t1 ID=Gcaud8754.t1|Name=Gcaud8754.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=933bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:16368..18855+ (Gracilaria caudata M_176_S67 male)
ATGGGAAGAGGGAAGCTCACGCGACTTTCTCTCGTACAGAAGATTCGACT
GCGACACGAGGAGGTTAAACGATGGCGAAAGAAATGCCGAGTCAAGAAAA
TTCAGCCCAATGTCATCGACGAAATCATAAAAGGATCGCCAAGAACGCCT
TCTCAAGCCCTTTCGTTTATTAATAATGCCCGCTCTATAGGTTTCAACCC
CGCCAATTTCTCTCCAGTCTTGTGTAAGACCGTAATCAACAGAAACTTGC
AGCGCTTGTTATTAGGGGAAGCGAGGGCTCTATTACCGAACGCGGGTCGC
GGACATGTGACGTCAAAGGAGGTAGCAGATGTCTCTGGTCGTGCCGTCGA
AAGCAAGTACAAGATTTGTTCTAGACCGTACTTGCCTGGGGTTAAAGAAG
TGGCCGAAATTGCCCACGAGGCATTGCACAATGCTGTGCATCAGTTTGAG
CGCGAAAACCGCGCAAAGCTGGACAGCAAAGAGCCTGTCGCGCTGGGCGC
TTGGTTTGATAAAACGACGGAGAATGACCAACCAATACGTATTACCATCA
TGCATATTGGTCCCAAGGAGAAAGCCCATATTTCTCGTCGCAGAGACAGA
TTCCCGTTCTGGGGTGCTGCAGTTCTTTGCCTTCAAGAGAAAAAAAATCC
TGACTCGGGCATTACTTTACATAACGACCGCCCCTTTGACAAGGCCTGGT
TCCTGCAAGATGGTGACATGATGATTATCACCCCTAAATCAGTACAATCA
GTCGTCATAACAGCAACTAACAGAGAAGCTCACGCATTGATCAATGCGTT
TGTACGCAAGCACAGGCTGGTCGAACCTGCCTTCGCTATTACGGCGGGTC
CGCGTCTTCTACCCAGTGTGAGACGTACGAATGTGGAAGCGGTTACGTCT
GCGACTGTGCCGGAACTCAGATGTGTGATGTAA