Gcaud2720.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2720.t1
Unique Name	Gcaud2720.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_409_length_26400_cov_4.606408	contig	NODE_409_length_26400_cov_4.606408:11085..12182 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1502770.JQMG01000001_gene1762
PFAMs	Carb_anhydrase
Max annot lvl	206350\|Nitrosomonadales
KEGG rclass	RC02807
KEGG ko	ko:K01674
KEGG Reaction	R00132,R10092
KEGG Pathway	ko00910,map00910
Evalue	3.5e-12
EggNOG OGs	COG3338@1\|root,COG3338@2\|Bacteria,1PEA6@1224\|Proteobacteria,2VI5K@28216\|Betaproteobacteria,2KMIQ@206350\|Nitrosomonadales
EC	4.2.1.1
Description	Eukaryotic-type carbonic anhydrase
COG category	P
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2720	Gcaud2720	Gracilaria caudata M_176_S67 male	gene	NODE_409_length_26400_cov_4.606408 11085..12182 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2720.t1.stop1	Gcaud2720.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_409_length_26400_cov_4.606408 11085..11087 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2720.t1.CDS1	Gcaud2720.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_409_length_26400_cov_4.606408 11085..12182 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2720.t1.exon1	Gcaud2720.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_409_length_26400_cov_4.606408 11085..12182 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2720.t1.start1	Gcaud2720.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_409_length_26400_cov_4.606408 12180..12182 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2720.t1	Gcaud2720.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_409_length_26400_cov_4.606408 11085..12182 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_409_length_26400_cov_4.606408:11085..12182-
coding sequence from alignment at NODE_409_length_26400_cov_4.606408:11085..12182-

mRNA sequence

>Gcaud2720.t1 ID=Gcaud2720.t1|Name=Gcaud2720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
LNASLLLSKAAPSTSEDLISVPSPETYTPATSAQPSPPSPKRGKRPTWGY
DEENGPSVWHTLSSDWQVAETGALQSPISLSYKTASLEDANSPDRPRLQT
TSSKLAGRLRPLPNAAQPSLQLEPYIPPPPPVVGDAPPLDIYKSPPPPAV
IYAEDSSYELKRIHFHAGRTEHVIGGWSGALETHFCFERRDGPFVPRDED
DEKTETGNDNTREGIEETADIRKEQKKVEKDRKAPKYLNVAVLGEKAETS
APWLSGFLKTFRTRPADEVSVVTSMDMSNLIPSFEKCDIYAYTGSFTTPP
CTEGVQWLVLSSRMPVAMDDVNEILRMQGGENVRPIQKVNGRRVSRFPAM
KLSTEENSRESRPQK*

spliced messenger RNA

>Gcaud2720.t1 ID=Gcaud2720.t1|Name=Gcaud2720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:11085..12182- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAATGCATCGTTGTTGCTATCCAAAGCGGCCCCTTCAACTAGCGAAGA
TTTAATTTCCGTCCCCTCCCCGGAGACTTATACTCCTGCGACATCTGCGC
AACCCAGCCCGCCTTCGCCGAAGCGTGGAAAGCGTCCGACATGGGGGTAC
GATGAAGAAAACGGCCCATCGGTGTGGCATACGCTTTCTTCAGATTGGCA
AGTTGCTGAGACGGGAGCTCTACAATCTCCAATTTCGCTGTCTTACAAAA
CTGCATCGTTGGAAGATGCCAACTCTCCGGATCGCCCTCGTCTGCAAACC
ACATCTTCAAAACTAGCTGGTCGCCTGCGTCCTCTACCAAACGCTGCCCA
ACCGTCTTTGCAGTTGGAACCTTACATACCCCCGCCGCCGCCTGTTGTTG
GAGATGCTCCCCCTTTAGATATCTACAAATCACCGCCTCCTCCTGCTGTC
ATCTACGCCGAAGACTCGTCATATGAACTGAAGAGAATTCACTTTCATGC
TGGACGAACAGAACACGTAATCGGGGGATGGTCGGGAGCATTAGAGACGC
ATTTCTGTTTTGAGCGTCGCGACGGACCGTTTGTCCCTCGGGACGAGGAC
GATGAAAAGACTGAAACAGGAAACGATAATACAAGGGAGGGCATAGAGGA
AACTGCTGATATACGAAAGGAACAAAAGAAGGTTGAGAAAGACCGTAAGG
CACCTAAGTATTTGAATGTGGCTGTCTTGGGAGAGAAGGCGGAAACGTCT
GCGCCATGGCTCTCTGGATTTTTGAAAACCTTTCGCACGCGTCCCGCCGA
CGAGGTTTCTGTTGTTACGTCAATGGATATGAGTAACCTTATACCGAGCT
TTGAGAAATGCGACATATATGCGTACACGGGGTCGTTTACAACGCCTCCG
TGTACTGAGGGAGTGCAGTGGCTAGTTTTATCAAGCAGAATGCCCGTAGC
TATGGATGATGTGAATGAAATACTGCGAATGCAAGGGGGTGAGAATGTCA
GACCGATACAAAAAGTCAATGGAAGACGAGTATCGCGCTTCCCGGCTATG
AAGTTAAGTACGGAAGAAAATTCAAGGGAATCGCGGCCACAAAAATAA

protein sequence of Gcaud2720.t1

>Gcaud2720.t1 ID=Gcaud2720.t1|Name=Gcaud2720.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
LNASLLLSKAAPSTSEDLISVPSPETYTPATSAQPSPPSPKRGKRPTWGY
DEENGPSVWHTLSSDWQVAETGALQSPISLSYKTASLEDANSPDRPRLQT
TSSKLAGRLRPLPNAAQPSLQLEPYIPPPPPVVGDAPPLDIYKSPPPPAV
IYAEDSSYELKRIHFHAGRTEHVIGGWSGALETHFCFERRDGPFVPRDED
DEKTETGNDNTREGIEETADIRKEQKKVEKDRKAPKYLNVAVLGEKAETS
APWLSGFLKTFRTRPADEVSVVTSMDMSNLIPSFEKCDIYAYTGSFTTPP
CTEGVQWLVLSSRMPVAMDDVNEILRMQGGENVRPIQKVNGRRVSRFPAM
KLSTEENSRESRPQK*

mRNA from alignment at NODE_409_length_26400_cov_4.606408:11085..12182-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2720.t1 ID=Gcaud2720.t1|Name=Gcaud2720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:11085..12182- (Gracilaria caudata M_176_S67 male)
TTGAATGCATCGTTGTTGCTATCCAAAGCGGCCCCTTCAACTAGCGAAGA
TTTAATTTCCGTCCCCTCCCCGGAGACTTATACTCCTGCGACATCTGCGC
AACCCAGCCCGCCTTCGCCGAAGCGTGGAAAGCGTCCGACATGGGGGTAC
GATGAAGAAAACGGCCCATCGGTGTGGCATACGCTTTCTTCAGATTGGCA
AGTTGCTGAGACGGGAGCTCTACAATCTCCAATTTCGCTGTCTTACAAAA
CTGCATCGTTGGAAGATGCCAACTCTCCGGATCGCCCTCGTCTGCAAACC
ACATCTTCAAAACTAGCTGGTCGCCTGCGTCCTCTACCAAACGCTGCCCA
ACCGTCTTTGCAGTTGGAACCTTACATACCCCCGCCGCCGCCTGTTGTTG
GAGATGCTCCCCCTTTAGATATCTACAAATCACCGCCTCCTCCTGCTGTC
ATCTACGCCGAAGACTCGTCATATGAACTGAAGAGAATTCACTTTCATGC
TGGACGAACAGAACACGTAATCGGGGGATGGTCGGGAGCATTAGAGACGC
ATTTCTGTTTTGAGCGTCGCGACGGACCGTTTGTCCCTCGGGACGAGGAC
GATGAAAAGACTGAAACAGGAAACGATAATACAAGGGAGGGCATAGAGGA
AACTGCTGATATACGAAAGGAACAAAAGAAGGTTGAGAAAGACCGTAAGG
CACCTAAGTATTTGAATGTGGCTGTCTTGGGAGAGAAGGCGGAAACGTCT
GCGCCATGGCTCTCTGGATTTTTGAAAACCTTTCGCACGCGTCCCGCCGA
CGAGGTTTCTGTTGTTACGTCAATGGATATGAGTAACCTTATACCGAGCT
TTGAGAAATGCGACATATATGCGTACACGGGGTCGTTTACAACGCCTCCG
TGTACTGAGGGAGTGCAGTGGCTAGTTTTATCAAGCAGAATGCCCGTAGC
TATGGATGATGTGAATGAAATACTGCGAATGCAAGGGGGTGAGAATGTCA
GACCGATACAAAAAGTCAATGGAAGACGAGTATCGCGCTTCCCGGCTATG
AAGTTAAGTACGGAAGAAAATTCAAGGGAATCGCGGCCACAAAAATAA

Coding sequence (CDS) from alignment at NODE_409_length_26400_cov_4.606408:11085..12182-

>Gcaud2720.t1 ID=Gcaud2720.t1|Name=Gcaud2720.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_409_length_26400_cov_4.606408:11085..12182- (Gracilaria caudata M_176_S67 male)
TTGAATGCATCGTTGTTGCTATCCAAAGCGGCCCCTTCAACTAGCGAAGA
TTTAATTTCCGTCCCCTCCCCGGAGACTTATACTCCTGCGACATCTGCGC
AACCCAGCCCGCCTTCGCCGAAGCGTGGAAAGCGTCCGACATGGGGGTAC
GATGAAGAAAACGGCCCATCGGTGTGGCATACGCTTTCTTCAGATTGGCA
AGTTGCTGAGACGGGAGCTCTACAATCTCCAATTTCGCTGTCTTACAAAA
CTGCATCGTTGGAAGATGCCAACTCTCCGGATCGCCCTCGTCTGCAAACC
ACATCTTCAAAACTAGCTGGTCGCCTGCGTCCTCTACCAAACGCTGCCCA
ACCGTCTTTGCAGTTGGAACCTTACATACCCCCGCCGCCGCCTGTTGTTG
GAGATGCTCCCCCTTTAGATATCTACAAATCACCGCCTCCTCCTGCTGTC
ATCTACGCCGAAGACTCGTCATATGAACTGAAGAGAATTCACTTTCATGC
TGGACGAACAGAACACGTAATCGGGGGATGGTCGGGAGCATTAGAGACGC
ATTTCTGTTTTGAGCGTCGCGACGGACCGTTTGTCCCTCGGGACGAGGAC
GATGAAAAGACTGAAACAGGAAACGATAATACAAGGGAGGGCATAGAGGA
AACTGCTGATATACGAAAGGAACAAAAGAAGGTTGAGAAAGACCGTAAGG
CACCTAAGTATTTGAATGTGGCTGTCTTGGGAGAGAAGGCGGAAACGTCT
GCGCCATGGCTCTCTGGATTTTTGAAAACCTTTCGCACGCGTCCCGCCGA
CGAGGTTTCTGTTGTTACGTCAATGGATATGAGTAACCTTATACCGAGCT
TTGAGAAATGCGACATATATGCGTACACGGGGTCGTTTACAACGCCTCCG
TGTACTGAGGGAGTGCAGTGGCTAGTTTTATCAAGCAGAATGCCCGTAGC
TATGGATGATGTGAATGAAATACTGCGAATGCAAGGGGGTGAGAATGTCA
GACCGATACAAAAAGTCAATGGAAGACGAGTATCGCGCTTCCCGGCTATG
AAGTTAAGTACGGAAGAAAATTCAAGGGAATCGCGGCCACAAAAATAA