Gcaud1795.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1795.t1
Unique Name	Gcaud1795.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	372

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1117_length_13638_cov_4.806968	contig	NODE_1117_length_13638_cov_4.806968:5255..6370 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118161.KB235922_gene2665
PFAMs	Oxidored_FMN
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00250
KEGG ko	ko:K10680
KEGG Reaction	R08014,R08017,R08042
KEGG Pathway	ko00633,ko01120,map00633,map01120
Evalue	2.03e-122
EggNOG OGs	COG1902@1\|root,COG1902@2\|Bacteria,1FZYT@1117\|Cyanobacteria,3VIN3@52604\|Pleurocapsales
Description	NADH:flavin oxidoreductase / NADH oxidase family
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1795	Gcaud1795	Gracilaria caudata M_176_S67 male	gene	NODE_1117_length_13638_cov_4.806968 5255..6370 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1795.t1.start1	Gcaud1795.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1117_length_13638_cov_4.806968 5255..5257 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1795.t1.CDS1	Gcaud1795.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1117_length_13638_cov_4.806968 5255..6370 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1795.t1.exon1	Gcaud1795.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1117_length_13638_cov_4.806968 5255..6370 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1795.t1.stop1	Gcaud1795.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1117_length_13638_cov_4.806968 6368..6370 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1795.t1	Gcaud1795.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1117_length_13638_cov_4.806968 5255..6370 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+
coding sequence from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+

mRNA sequence

>Gcaud1795.t1 ID=Gcaud1795.t1|Name=Gcaud1795.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp
MGPHKVKNRVVMAPLTRGRAGPSHEANHLMADYYSQRASAGLIISEGAQT
SIMARGWFQAPDVFAPRHAKAWKTVTDMVHQRNGLMFCQLWHCGRASHSS
FRDGEPGYEGRKAISMAPSAIKRPSCSGKQNHTPRAMEVDIEEPREMRLE
EIENLPEEFRNAAQTAKDGGFDGVEIHSASGFLLDTFLQSCSNKRDDEYG
GSLENRFRIIDRILRAVFRVYDPSSVGIRISPNGAYNGMGSDDFRESFLY
YATRLNEYGLGYLHIVIGLDFGFHDKGKPMTLAEFRKVYNGTVIANMGYD
AESAENEIAVGNANLISFGRAFLNNPDLVEKFSTGTELKPMLDPKYWYTS
VDHVWANDGYTDLNKNGEREK*

spliced messenger RNA

>Gcaud1795.t1 ID=Gcaud1795.t1|Name=Gcaud1795.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCCTCACAAAGTGAAGAATCGTGTCGTGATGGCTCCCCTCACGCG
TGGTAGGGCAGGACCTTCTCATGAAGCCAACCATCTCATGGCGGATTATT
ATTCTCAGCGTGCTTCAGCAGGCCTCATTATATCAGAAGGGGCTCAGACC
TCTATCATGGCTCGTGGCTGGTTCCAAGCCCCAGATGTGTTCGCACCAAG
ACATGCCAAAGCTTGGAAGACAGTCACTGACATGGTTCACCAGAGAAATG
GACTAATGTTCTGCCAGTTGTGGCATTGTGGCCGTGCTAGTCACTCGTCG
TTTCGTGATGGAGAGCCAGGTTACGAAGGAAGAAAAGCCATCTCGATGGC
TCCCTCCGCGATCAAGCGTCCGTCGTGTTCTGGAAAACAGAACCATACTC
CACGGGCAATGGAAGTGGATATCGAGGAACCTCGTGAAATGAGGCTTGAA
GAAATTGAGAACCTTCCAGAAGAGTTTCGAAATGCCGCTCAAACAGCGAA
GGACGGTGGGTTTGACGGAGTGGAGATCCACAGTGCCAGCGGATTTCTCT
TGGACACATTCTTACAAAGTTGCTCGAACAAACGTGATGATGAATACGGT
GGCTCCTTGGAGAACCGATTCCGTATCATTGACAGGATTTTAAGAGCTGT
GTTTAGAGTTTACGACCCCAGCTCTGTCGGTATTCGAATATCTCCGAACG
GAGCGTACAATGGTATGGGAAGCGATGACTTTCGAGAATCGTTTCTATAT
TACGCGACTCGACTCAATGAGTACGGGCTTGGATACTTGCACATTGTGAT
TGGTCTTGACTTTGGATTTCACGACAAGGGCAAACCAATGACTCTTGCAG
AATTTAGGAAGGTTTACAATGGTACAGTTATTGCAAACATGGGGTATGAC
GCCGAATCCGCAGAGAACGAAATTGCCGTAGGTAATGCGAATCTCATATC
CTTTGGCAGAGCGTTTCTAAACAATCCAGACCTGGTAGAAAAGTTTTCGA
CAGGCACCGAGCTGAAGCCCATGCTCGACCCCAAGTACTGGTACACTTCA
GTGGATCACGTCTGGGCGAATGACGGATACACGGATCTAAACAAGAATGG
GGAAAGAGAGAAATAA

protein sequence of Gcaud1795.t1

>Gcaud1795.t1 ID=Gcaud1795.t1|Name=Gcaud1795.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=372bp
MGPHKVKNRVVMAPLTRGRAGPSHEANHLMADYYSQRASAGLIISEGAQT
SIMARGWFQAPDVFAPRHAKAWKTVTDMVHQRNGLMFCQLWHCGRASHSS
FRDGEPGYEGRKAISMAPSAIKRPSCSGKQNHTPRAMEVDIEEPREMRLE
EIENLPEEFRNAAQTAKDGGFDGVEIHSASGFLLDTFLQSCSNKRDDEYG
GSLENRFRIIDRILRAVFRVYDPSSVGIRISPNGAYNGMGSDDFRESFLY
YATRLNEYGLGYLHIVIGLDFGFHDKGKPMTLAEFRKVYNGTVIANMGYD
AESAENEIAVGNANLISFGRAFLNNPDLVEKFSTGTELKPMLDPKYWYTS
VDHVWANDGYTDLNKNGEREK*

mRNA from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1795.t1 ID=Gcaud1795.t1|Name=Gcaud1795.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+ (Gracilaria caudata M_176_S67 male)
ATGGGGCCTCACAAAGTGAAGAATCGTGTCGTGATGGCTCCCCTCACGCG
TGGTAGGGCAGGACCTTCTCATGAAGCCAACCATCTCATGGCGGATTATT
ATTCTCAGCGTGCTTCAGCAGGCCTCATTATATCAGAAGGGGCTCAGACC
TCTATCATGGCTCGTGGCTGGTTCCAAGCCCCAGATGTGTTCGCACCAAG
ACATGCCAAAGCTTGGAAGACAGTCACTGACATGGTTCACCAGAGAAATG
GACTAATGTTCTGCCAGTTGTGGCATTGTGGCCGTGCTAGTCACTCGTCG
TTTCGTGATGGAGAGCCAGGTTACGAAGGAAGAAAAGCCATCTCGATGGC
TCCCTCCGCGATCAAGCGTCCGTCGTGTTCTGGAAAACAGAACCATACTC
CACGGGCAATGGAAGTGGATATCGAGGAACCTCGTGAAATGAGGCTTGAA
GAAATTGAGAACCTTCCAGAAGAGTTTCGAAATGCCGCTCAAACAGCGAA
GGACGGTGGGTTTGACGGAGTGGAGATCCACAGTGCCAGCGGATTTCTCT
TGGACACATTCTTACAAAGTTGCTCGAACAAACGTGATGATGAATACGGT
GGCTCCTTGGAGAACCGATTCCGTATCATTGACAGGATTTTAAGAGCTGT
GTTTAGAGTTTACGACCCCAGCTCTGTCGGTATTCGAATATCTCCGAACG
GAGCGTACAATGGTATGGGAAGCGATGACTTTCGAGAATCGTTTCTATAT
TACGCGACTCGACTCAATGAGTACGGGCTTGGATACTTGCACATTGTGAT
TGGTCTTGACTTTGGATTTCACGACAAGGGCAAACCAATGACTCTTGCAG
AATTTAGGAAGGTTTACAATGGTACAGTTATTGCAAACATGGGGTATGAC
GCCGAATCCGCAGAGAACGAAATTGCCGTAGGTAATGCGAATCTCATATC
CTTTGGCAGAGCGTTTCTAAACAATCCAGACCTGGTAGAAAAGTTTTCGA
CAGGCACCGAGCTGAAGCCCATGCTCGACCCCAAGTACTGGTACACTTCA
GTGGATCACGTCTGGGCGAATGACGGATACACGGATCTAAACAAGAATGG
GGAAAGAGAGAAATAA

Coding sequence (CDS) from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+

>Gcaud1795.t1 ID=Gcaud1795.t1|Name=Gcaud1795.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1116bp|location=Sequence derived from alignment at NODE_1117_length_13638_cov_4.806968:5255..6370+ (Gracilaria caudata M_176_S67 male)
ATGGGGCCTCACAAAGTGAAGAATCGTGTCGTGATGGCTCCCCTCACGCG
TGGTAGGGCAGGACCTTCTCATGAAGCCAACCATCTCATGGCGGATTATT
ATTCTCAGCGTGCTTCAGCAGGCCTCATTATATCAGAAGGGGCTCAGACC
TCTATCATGGCTCGTGGCTGGTTCCAAGCCCCAGATGTGTTCGCACCAAG
ACATGCCAAAGCTTGGAAGACAGTCACTGACATGGTTCACCAGAGAAATG
GACTAATGTTCTGCCAGTTGTGGCATTGTGGCCGTGCTAGTCACTCGTCG
TTTCGTGATGGAGAGCCAGGTTACGAAGGAAGAAAAGCCATCTCGATGGC
TCCCTCCGCGATCAAGCGTCCGTCGTGTTCTGGAAAACAGAACCATACTC
CACGGGCAATGGAAGTGGATATCGAGGAACCTCGTGAAATGAGGCTTGAA
GAAATTGAGAACCTTCCAGAAGAGTTTCGAAATGCCGCTCAAACAGCGAA
GGACGGTGGGTTTGACGGAGTGGAGATCCACAGTGCCAGCGGATTTCTCT
TGGACACATTCTTACAAAGTTGCTCGAACAAACGTGATGATGAATACGGT
GGCTCCTTGGAGAACCGATTCCGTATCATTGACAGGATTTTAAGAGCTGT
GTTTAGAGTTTACGACCCCAGCTCTGTCGGTATTCGAATATCTCCGAACG
GAGCGTACAATGGTATGGGAAGCGATGACTTTCGAGAATCGTTTCTATAT
TACGCGACTCGACTCAATGAGTACGGGCTTGGATACTTGCACATTGTGAT
TGGTCTTGACTTTGGATTTCACGACAAGGGCAAACCAATGACTCTTGCAG
AATTTAGGAAGGTTTACAATGGTACAGTTATTGCAAACATGGGGTATGAC
GCCGAATCCGCAGAGAACGAAATTGCCGTAGGTAATGCGAATCTCATATC
CTTTGGCAGAGCGTTTCTAAACAATCCAGACCTGGTAGAAAAGTTTTCGA
CAGGCACCGAGCTGAAGCCCATGCTCGACCCCAAGTACTGGTACACTTCA
GTGGATCACGTCTGGGCGAATGACGGATACACGGATCTAAACAAGAATGG
GGAAAGAGAGAAATAA