Gcaud8385.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8385.t1
Unique Name	Gcaud8385.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_406_length_26511_cov_4.568963	contig	NODE_406_length_26511_cov_4.568963:11875..13145 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_04198T0
Preferred name	AOX2
PFAMs	AOX
Max annot lvl	33154\|Opisthokonta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue	5.85e-78
EggNOG OGs	28JWX@1\|root,2QSB5@2759\|Eukaryota,38J5S@33154\|Opisthokonta
Description	alternative oxidase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8385	Gcaud8385	Gracilaria caudata M_176_S67 male	gene	NODE_406_length_26511_cov_4.568963 11875..13145 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8385.t1.start1	Gcaud8385.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_406_length_26511_cov_4.568963 11875..11877 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8385.t1.CDS1	Gcaud8385.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 11875..12201 +
Gcaud8385.t1.CDS2	Gcaud8385.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 12293..12608 +
Gcaud8385.t1.CDS3	Gcaud8385.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 12691..13145 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8385.t1.exon1	Gcaud8385.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 11875..12201 +
Gcaud8385.t1.exon2	Gcaud8385.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 12293..12608 +
Gcaud8385.t1.exon3	Gcaud8385.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 12691..13145 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8385.t1.intron1	Gcaud8385.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 12202..12292 +
Gcaud8385.t1.intron2	Gcaud8385.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 12609..12690 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8385.t1.stop1	Gcaud8385.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_406_length_26511_cov_4.568963 13143..13145 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8385.t1	Gcaud8385.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_406_length_26511_cov_4.568963 11875..13145 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+
coding sequence from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+

mRNA sequence

>Gcaud8385.t1 ID=Gcaud8385.t1|Name=Gcaud8385.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp
MAPGRSMFHAFKHISRTLKLFEARRSHSIPFYFEKYGHGSTLAVRNLHCL
ASTPQSGRSFSLMNGGLAKPFSPGCSLYTKQLCTKAQAAVSPDQKGNSSK
TSRYDWVDEEATQLIEKAYRRHKALADNSKSFPPSLSVKDLEKIGTPVHY
PPKDFVDRIAFNAMKFLRVFVHAFFREKYDHHAVCLETVAAVPGLVGGFH
RHLRSLRRMKRDHGWITVMQEEAENERMHLLIFMKVTNPSALERGLVVLA
QGLYLTFYSALYLAMPRAAHRLTGYLEEEAHRAYTEYLECIDNGKLKNKP
APEIAKNYYHLVDGATMRDVILHVRADEAMHRDVNHHLGNKYRDGDTDSP
THAIDLEQEDAGRRL*

spliced messenger RNA

>Gcaud8385.t1 ID=Gcaud8385.t1|Name=Gcaud8385.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atGGCCCCTGGTCGATCAATGTTCCATGCTTTCAAGCACATTTCTCGCAC
CCTCAAGCTTTTCGAAGCCCGCCGAAGTCATTCGATTCCGTTTTACTTTG
AAAAATATGGTCATGGAAGTACCTTAGCTGTTCGCAACCTACATTGTCTT
GCTTCAACCCCACAATCGGGACGCAGTTTCTCTCTCATGAACGGGGGACT
AGCAAAACCTTTCAGTCCTGGCTGTAGCCTCTATACCAAGCAGCTATGCA
CAAAGGCGCAAGCAGCGGTGTCTCCTGACCAAAAAGGAAATTCTTCAAAG
ACCAGTCGTTATGACTGGGTTGACGAAGAAGCTACCCAATTGATTGAGAA
AGCATACAGGCGACATAAGGCCCTAGCTGATAATTCCAAATCATTTCCTC
CGAGTCTATCTGTGAAAGACCTGGAAAAGATTGGAACTCCAGTGCACTAT
CCGCCCAAGGACTTTGTAGATCGCATTGCTTTCAATGCAATGAAATTCCT
TCGTGTATTCGTTCACGCTTTCTTCCGTGAGAAGTATGATCATCATGCTG
TATGCTTGGAAACTGTCGCTGCCGTCCCCGGTCTTGTTGGGGGCTTCCAC
CGCCATTTACGTTCTCTTAGAAGGATGAAGCGCGATCATGGGTGGATAAC
TGTTATGCAAGAAGAAGCCGAAAACGAACGAATGCACTTACTAATTTTCA
TGAAGGTCACGAACCCTTCTGCTCTGGAGCGAGGATTGGTCGTGCTGGCC
CAAGGGTTGTATCTCACATTCTACTCGGCATTATATCTCGCAATGCCACG
TGCGGCCCATCGCCTAACAGGATACTTGGAAGAGGAAGCACATAGAGCCT
ACACAGAGTATCTCGAGTGCATTGACAATGGAAAACTGAAGAACAAACCT
GCTCCCGAAATCGCGAAGAACTACTACCATCTGGTCGACGGCGCTACCAT
GCGCGATGTGATTCTTCACGTTCGAGCGGATGAGGCCATGCATCGCGACG
TGAATCATCACTTAGGAAACAAGTATCGAGATGGCGATACGGACTCTCCG
ACACATGCGATTGATCTCGAGCAAGAGGATGCTGGAAGGCGGTTGTAA

protein sequence of Gcaud8385.t1

>Gcaud8385.t1 ID=Gcaud8385.t1|Name=Gcaud8385.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=366bp
MAPGRSMFHAFKHISRTLKLFEARRSHSIPFYFEKYGHGSTLAVRNLHCL
ASTPQSGRSFSLMNGGLAKPFSPGCSLYTKQLCTKAQAAVSPDQKGNSSK
TSRYDWVDEEATQLIEKAYRRHKALADNSKSFPPSLSVKDLEKIGTPVHY
PPKDFVDRIAFNAMKFLRVFVHAFFREKYDHHAVCLETVAAVPGLVGGFH
RHLRSLRRMKRDHGWITVMQEEAENERMHLLIFMKVTNPSALERGLVVLA
QGLYLTFYSALYLAMPRAAHRLTGYLEEEAHRAYTEYLECIDNGKLKNKP
APEIAKNYYHLVDGATMRDVILHVRADEAMHRDVNHHLGNKYRDGDTDSP
THAIDLEQEDAGRRL*

mRNA from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+

Legend: start_codonpolypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8385.t1 ID=Gcaud8385.t1|Name=Gcaud8385.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1271bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+ (Gracilaria caudata M_176_S67 male)
atGGCCCCTGGTCGATCAATGTTCCATGCTTTCAAGCACATTTCTCGCAC
CCTCAAGCTTTTCGAAGCCCGCCGAAGTCATTCGATTCCGTTTTACTTTG
AAAAATATGGTCATGGAAGTACCTTAGCTGTTCGCAACCTACATTGTCTT
GCTTCAACCCCACAATCGGGACGCAGTTTCTCTCTCATGAACGGGGGACT
AGCAAAACCTTTCAGTCCTGGCTGTAGCCTCTATACCAAGCAGCTATGCA
CAAAGGCGCAAGCAGCGGTGTCTCCTGACCAAAAAGGAAATTCTTCAAAG
ACCAGTCGTTATGACTGGGTTGACGAAGTAAGTATGCGGCCGTCCAATGC
TCCAATATATAGCGCTTCTTCTGCATGGTATTCCTTGGTACTCACACAAT
CTGTCTCCGCTTGTGCAGGAAGCTACCCAATTGATTGAGAAAGCATACAG
GCGACATAAGGCCCTAGCTGATAATTCCAAATCATTTCCTCCGAGTCTAT
CTGTGAAAGACCTGGAAAAGATTGGAACTCCAGTGCACTATCCGCCCAAG
GACTTTGTAGATCGCATTGCTTTCAATGCAATGAAATTCCTTCGTGTATT
CGTTCACGCTTTCTTCCGTGAGAAGTATGATCATCATGCTGTATGCTTGG
AAACTGTCGCTGCCGTCCCCGGTCTTGTTGGGGGCTTCCACCGCCATTTA
CGTTCTCTTAGAAGGATGAAGCGCGATCATGGGTGTACGTCCCCCTCCCC
CTCTTCCAATGTTCGTGACAAGGATTCTAACTTCTGTCAATGACTTTTTT
TTTGAGCATCATGCAGGGATAACTGTTATGCAAGAAGAAGCCGAAAACGA
ACGAATGCACTTACTAATTTTCATGAAGGTCACGAACCCTTCTGCTCTGG
AGCGAGGATTGGTCGTGCTGGCCCAAGGGTTGTATCTCACATTCTACTCG
GCATTATATCTCGCAATGCCACGTGCGGCCCATCGCCTAACAGGATACTT
GGAAGAGGAAGCACATAGAGCCTACACAGAGTATCTCGAGTGCATTGACA
ATGGAAAACTGAAGAACAAACCTGCTCCCGAAATCGCGAAGAACTACTAC
CATCTGGTCGACGGCGCTACCATGCGCGATGTGATTCTTCACGTTCGAGC
GGATGAGGCCATGCATCGCGACGTGAATCATCACTTAGGAAACAAGTATC
GAGATGGCGATACGGACTCTCCGACACATGCGATTGATCTCGAGCAAGAG
GATGCTGGAAGGCGGTTGTAA

Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+

>Gcaud8385.t1 ID=Gcaud8385.t1|Name=Gcaud8385.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1098bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:11875..13145+ (Gracilaria caudata M_176_S67 male)
atGGCCCCTGGTCGATCAATGTTCCATGCTTTCAAGCACATTTCTCGCAC
CCTCAAGCTTTTCGAAGCCCGCCGAAGTCATTCGATTCCGTTTTACTTTG
AAAAATATGGTCATGGAAGTACCTTAGCTGTTCGCAACCTACATTGTCTT
GCTTCAACCCCACAATCGGGACGCAGTTTCTCTCTCATGAACGGGGGACT
AGCAAAACCTTTCAGTCCTGGCTGTAGCCTCTATACCAAGCAGCTATGCA
CAAAGGCGCAAGCAGCGGTGTCTCCTGACCAAAAAGGAAATTCTTCAAAG
ACCAGTCGTTATGACTGGGTTGACGAAGAAGCTACCCAATTGATTGAGAA
AGCATACAGGCGACATAAGGCCCTAGCTGATAATTCCAAATCATTTCCTC
CGAGTCTATCTGTGAAAGACCTGGAAAAGATTGGAACTCCAGTGCACTAT
CCGCCCAAGGACTTTGTAGATCGCATTGCTTTCAATGCAATGAAATTCCT
TCGTGTATTCGTTCACGCTTTCTTCCGTGAGAAGTATGATCATCATGCTG
TATGCTTGGAAACTGTCGCTGCCGTCCCCGGTCTTGTTGGGGGCTTCCAC
CGCCATTTACGTTCTCTTAGAAGGATGAAGCGCGATCATGGGTGGATAAC
TGTTATGCAAGAAGAAGCCGAAAACGAACGAATGCACTTACTAATTTTCA
TGAAGGTCACGAACCCTTCTGCTCTGGAGCGAGGATTGGTCGTGCTGGCC
CAAGGGTTGTATCTCACATTCTACTCGGCATTATATCTCGCAATGCCACG
TGCGGCCCATCGCCTAACAGGATACTTGGAAGAGGAAGCACATAGAGCCT
ACACAGAGTATCTCGAGTGCATTGACAATGGAAAACTGAAGAACAAACCT
GCTCCCGAAATCGCGAAGAACTACTACCATCTGGTCGACGGCGCTACCAT
GCGCGATGTGATTCTTCACGTTCGAGCGGATGAGGCCATGCATCGCGACG
TGAATCATCACTTAGGAAACAAGTATCGAGATGGCGATACGGACTCTCCG
ACACATGCGATTGATCTCGAGCAAGAGGATGCTGGAAGGCGGTTGTAA