Gcaud8389.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8389.t1
Unique NameGcaud8389.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_406_length_26511_cov_4.568963contigNODE_406_length_26511_cov_4.568963:21302..22071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JNL4
PFAMsGuanylate_cyc_2
Max annot lvl4751|Fungi
Evalue2.56e-40
EggNOG OGsKOG4621@1|root,KOG4621@2759|Eukaryota,38FP7@33154|Opisthokonta,3P7I9@4751|Fungi,1GXUX@112252|Fungi incertae sedis
DescriptionGuanylylate cyclase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8389Gcaud8389Gracilaria caudata M_176_S67 malegeneNODE_406_length_26511_cov_4.568963 21302..22071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8389.t1Gcaud8389.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_406_length_26511_cov_4.568963 21302..22071 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8389.t1.start1Gcaud8389.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_406_length_26511_cov_4.568963 21302..21304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8389.t1.CDS1Gcaud8389.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 21302..21367 +
Gcaud8389.t1.CDS2Gcaud8389.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_406_length_26511_cov_4.568963 21457..22071 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8389.t1.exon1Gcaud8389.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 21302..21367 +
Gcaud8389.t1.exon2Gcaud8389.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_406_length_26511_cov_4.568963 21457..22071 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8389.t1.intron1Gcaud8389.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_406_length_26511_cov_4.568963 21368..21456 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8389.t1.stop1Gcaud8389.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_406_length_26511_cov_4.568963 22069..22071 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8389.t1 ID=Gcaud8389.t1|Name=Gcaud8389.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
MRSWDCGLACVAMALKALGFKKLSLEDLVKRCGVEATWTIDIAYLLNQYG
VDCLYYTVTRGVRPEYLSHAFYKEMHDARGTNRVLERFKNAETFGVTVIE
GKLIITDIQRAIVEQSQIALVLVDKRLLRCSLCLGNNSTQDSFRSSQKNP
DGFLGHFVLLYAYHDESGCFLMKDPASGHDFCVVSASNLDLSRLAFGTDE
DIIFIGKATVPRKTGYFFNSTTYPDQ*
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spliced messenger RNA

>Gcaud8389.t1 ID=Gcaud8389.t1|Name=Gcaud8389.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:21302..22071+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGTTGGGACTGTGGGCTAGCATGCGTAGCAATGGCGCTCAAGGC
ACTGGGATTTAAGAAGTTATCATTAGAGGACTTGGTGAAGCGCTGCGGCG
TTGAGGCGACATGGACAATAGATATTGCTTACCTTCTAAACCAATACGGA
GTCGATTGTTTATACTATACCGTAACTAGAGGAGTGCGTCCTGAATATTT
ATCACATGCGTTCTACAAAGAAATGCATGATGCTCGTGGAACAAATCGGG
TATTAGAGAGGTTCAAAAATGCCGAAACCTTTGGAGTAACGGTTATTGAA
GGAAAGTTGATTATAACCGATATTCAAAGAGCAATAGTAGAGCAAAGTCA
AATAGCGCTAGTTCTTGTTGACAAACGTCTGCTGAGATGCTCACTCTGCC
TCGGTAATAATTCCACTCAGGATAGCTTTCGATCAAGCCAAAAGAACCCA
GATGGTTTTCTTGGTCATTTTGTCTTGTTATACGCATATCATGATGAAAG
TGGGTGTTTTTTGATGAAAGATCCAGCTTCGGGCCACGACTTCTGTGTCG
TTTCCGCATCAAACTTGGATCTCTCCCGGTTGGCATTCGGCACTGATGAG
GATATCATTTTCATTGGGAAAGCAACTGTTCCTCGAAAAACGGGATACTT
CTTCAACTCCACTACATACCCTGACCAATAG
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protein sequence of Gcaud8389.t1

>Gcaud8389.t1 ID=Gcaud8389.t1|Name=Gcaud8389.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
MRSWDCGLACVAMALKALGFKKLSLEDLVKRCGVEATWTIDIAYLLNQYG
VDCLYYTVTRGVRPEYLSHAFYKEMHDARGTNRVLERFKNAETFGVTVIE
GKLIITDIQRAIVEQSQIALVLVDKRLLRCSLCLGNNSTQDSFRSSQKNP
DGFLGHFVLLYAYHDESGCFLMKDPASGHDFCVVSASNLDLSRLAFGTDE
DIIFIGKATVPRKTGYFFNSTTYPDQ*
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mRNA from alignment at NODE_406_length_26511_cov_4.568963:21302..22071+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8389.t1 ID=Gcaud8389.t1|Name=Gcaud8389.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=770bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:21302..22071+ (Gracilaria caudata M_176_S67 male)
ATGCGCAGTTGGGACTGTGGGCTAGCATGCGTAGCAATGGCGCTCAAGGC
ACTGGGATTTAAGAAGGTGAGTGAGAGTTATCAATTCGTTCAATCCATCT
GTTCTAATGTGGGTTCCTGACGTTTCTGGCGTTTAACCACCGCTTGTTAC
ACAAGTTATCATTAGAGGACTTGGTGAAGCGCTGCGGCGTTGAGGCGACA
TGGACAATAGATATTGCTTACCTTCTAAACCAATACGGAGTCGATTGTTT
ATACTATACCGTAACTAGAGGAGTGCGTCCTGAATATTTATCACATGCGT
TCTACAAAGAAATGCATGATGCTCGTGGAACAAATCGGGTATTAGAGAGG
TTCAAAAATGCCGAAACCTTTGGAGTAACGGTTATTGAAGGAAAGTTGAT
TATAACCGATATTCAAAGAGCAATAGTAGAGCAAAGTCAAATAGCGCTAG
TTCTTGTTGACAAACGTCTGCTGAGATGCTCACTCTGCCTCGGTAATAAT
TCCACTCAGGATAGCTTTCGATCAAGCCAAAAGAACCCAGATGGTTTTCT
TGGTCATTTTGTCTTGTTATACGCATATCATGATGAAAGTGGGTGTTTTT
TGATGAAAGATCCAGCTTCGGGCCACGACTTCTGTGTCGTTTCCGCATCA
AACTTGGATCTCTCCCGGTTGGCATTCGGCACTGATGAGGATATCATTTT
CATTGGGAAAGCAACTGTTCCTCGAAAAACGGGATACTTCTTCAACTCCA
CTACATACCCTGACCAATAG
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Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:21302..22071+

>Gcaud8389.t1 ID=Gcaud8389.t1|Name=Gcaud8389.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:21302..22071+ (Gracilaria caudata M_176_S67 male)
ATGCGCAGTTGGGACTGTGGGCTAGCATGCGTAGCAATGGCGCTCAAGGC
ACTGGGATTTAAGAAGTTATCATTAGAGGACTTGGTGAAGCGCTGCGGCG
TTGAGGCGACATGGACAATAGATATTGCTTACCTTCTAAACCAATACGGA
GTCGATTGTTTATACTATACCGTAACTAGAGGAGTGCGTCCTGAATATTT
ATCACATGCGTTCTACAAAGAAATGCATGATGCTCGTGGAACAAATCGGG
TATTAGAGAGGTTCAAAAATGCCGAAACCTTTGGAGTAACGGTTATTGAA
GGAAAGTTGATTATAACCGATATTCAAAGAGCAATAGTAGAGCAAAGTCA
AATAGCGCTAGTTCTTGTTGACAAACGTCTGCTGAGATGCTCACTCTGCC
TCGGTAATAATTCCACTCAGGATAGCTTTCGATCAAGCCAAAAGAACCCA
GATGGTTTTCTTGGTCATTTTGTCTTGTTATACGCATATCATGATGAAAG
TGGGTGTTTTTTGATGAAAGATCCAGCTTCGGGCCACGACTTCTGTGTCG
TTTCCGCATCAAACTTGGATCTCTCCCGGTTGGCATTCGGCACTGATGAG
GATATCATTTTCATTGGGAAAGCAACTGTTCCTCGAAAAACGGGATACTT
CTTCAACTCCACTACATACCCTGACCAATAG
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