Gcaud8386.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8386.t1
Unique Name	Gcaud8386.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	382

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_406_length_26511_cov_4.568963	contig	NODE_406_length_26511_cov_4.568963:14982..16127 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8386	Gcaud8386	Gracilaria caudata M_176_S67 male	gene	NODE_406_length_26511_cov_4.568963 14982..16127 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8386.t1.start1	Gcaud8386.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_406_length_26511_cov_4.568963 14982..14984 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8386.t1.CDS1	Gcaud8386.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 14982..16127 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8386.t1.exon1	Gcaud8386.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 14982..16127 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8386.t1.stop1	Gcaud8386.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_406_length_26511_cov_4.568963 16125..16127 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8386.t1	Gcaud8386.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_406_length_26511_cov_4.568963 14982..16127 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+
coding sequence from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+

mRNA sequence

>Gcaud8386.t1 ID=Gcaud8386.t1|Name=Gcaud8386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=382bp
MPPSPEPDRKRIRTCTSAKDEVNTSDVENARSEFCPTRPPQAERKRELER
NRRNLVNIRFIELEKELIRSGPRATDPSDKGSASSSEFVAKGKRIDKEAV
LKEAAQRIAALRKEVESQASRIASMTDEISHLRAEKLELRTDKSYLRSEL
ENARNETKRLRVDNIGLWQAVRKQSLVKNYLAPDLAKIPIDLFTRSKHQS
MPQSATPSASTGPFSQGLQSQPLPSVLPSASQPQRAIFPSSSINAIHPQP
PDPDPAVETNPSMLQGESILMHQTSEELSDLFATYVPGVMNTADRAPIPS
LGAIPDLSQSTSLPVSHLRNPQLQLTQLMSSAQSNPNQPVVSSPVKDPQS
MQPNNSTSPDIGSSGREKSGDDPFSDIAYCV*

spliced messenger RNA

>Gcaud8386.t1 ID=Gcaud8386.t1|Name=Gcaud8386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCTCACCTGAACCCGACCGAAAGCGTATCCGTACATGCACGTC
AGCTAAAGATGAGGTGAACACCTCAGACGTCGAAAATGCACGCAGCGAGT
TCTGTCCAACCCGTCCCCCACAGGCGGAGCGCAAGCGAGAGTTAGAACGA
AATCGTCGCAATCTTGTGAATATTCGCTTTATCGAGCTTGAAAAAGAGCT
CATTCGTTCGGGTCCGCGCGCGACAGACCCCTCGGACAAGGGGTCTGCGT
CGTCGTCCGAGTTTGTGGCGAAGGGCAAACGGATCGACAAGGAAGCTGTG
CTAAAAGAGGCTGCCCAACGTATAGCAGCCTTGCGGAAAGAAGTTGAGTC
ACAGGCCTCACGCATCGCGAGTATGACCGACGAAATTTCTCATCTGCGTG
CAGAGAAGTTGGAACTGCGAACTGACAAGAGCTACTTGCGTAGCGAGCTT
GAGAACGCTCGCAACGAAACTAAGCGTCTGCGCGTCGATAATATTGGTTT
ATGGCAAGCAGTAAGGAAACAGTCGCTTGTCAAGAACTATTTGGCTCCGG
ACTTGGCTAAGATTCCCATCGACTTGTTCACCCGTTCAAAACATCAGAGT
ATGCCACAGTCCGCCACACCTTCCGCGAGCACTGGCCCTTTTTCACAGGG
TTTGCAATCACAACCACTCCCGTCGGTACTCCCTTCCGCCTCACAACCTC
AGCGAGCTATATTTCCAAGCTCGAGTATTAATGCAATACATCCGCAACCT
CCAGACCCAGATCCCGCAGTTGAAACTAATCCATCCATGTTACAAGGTGA
ATCTATTCTCATGCACCAGACATCCGAAGAGCTCAGCGACCTCTTCGCCA
CTTATGTCCCGGGTGTTATGAATACGGCTGATAGGGCCCCAATTCCTAGT
CTTGGAGCCATTCCAGACCTATCACAGTCAACATCTCTCCCTGTCTCCCA
TCTGCGCAACCCTCAACTTCAGTTAACCCAGCTTATGTCATCTGCACAGT
CGAATCCGAATCAACCAGTTGTGTCATCCCCTGTCAAGGATCCACAATCC
ATGCAACCGAACAACTCAACATCTCCAGATATCGGCAGTTCGGGGCGGGA
GAAATCTGGTGATGACCCATTCTCGGACATTGCTTATTGTGTGTGA

protein sequence of Gcaud8386.t1

>Gcaud8386.t1 ID=Gcaud8386.t1|Name=Gcaud8386.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=382bp
MPPSPEPDRKRIRTCTSAKDEVNTSDVENARSEFCPTRPPQAERKRELER
NRRNLVNIRFIELEKELIRSGPRATDPSDKGSASSSEFVAKGKRIDKEAV
LKEAAQRIAALRKEVESQASRIASMTDEISHLRAEKLELRTDKSYLRSEL
ENARNETKRLRVDNIGLWQAVRKQSLVKNYLAPDLAKIPIDLFTRSKHQS
MPQSATPSASTGPFSQGLQSQPLPSVLPSASQPQRAIFPSSSINAIHPQP
PDPDPAVETNPSMLQGESILMHQTSEELSDLFATYVPGVMNTADRAPIPS
LGAIPDLSQSTSLPVSHLRNPQLQLTQLMSSAQSNPNQPVVSSPVKDPQS
MQPNNSTSPDIGSSGREKSGDDPFSDIAYCV*

mRNA from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8386.t1 ID=Gcaud8386.t1|Name=Gcaud8386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+ (Gracilaria caudata M_176_S67 male)
ATGCCGCCCTCACCTGAACCCGACCGAAAGCGTATCCGTACATGCACGTC
AGCTAAAGATGAGGTGAACACCTCAGACGTCGAAAATGCACGCAGCGAGT
TCTGTCCAACCCGTCCCCCACAGGCGGAGCGCAAGCGAGAGTTAGAACGA
AATCGTCGCAATCTTGTGAATATTCGCTTTATCGAGCTTGAAAAAGAGCT
CATTCGTTCGGGTCCGCGCGCGACAGACCCCTCGGACAAGGGGTCTGCGT
CGTCGTCCGAGTTTGTGGCGAAGGGCAAACGGATCGACAAGGAAGCTGTG
CTAAAAGAGGCTGCCCAACGTATAGCAGCCTTGCGGAAAGAAGTTGAGTC
ACAGGCCTCACGCATCGCGAGTATGACCGACGAAATTTCTCATCTGCGTG
CAGAGAAGTTGGAACTGCGAACTGACAAGAGCTACTTGCGTAGCGAGCTT
GAGAACGCTCGCAACGAAACTAAGCGTCTGCGCGTCGATAATATTGGTTT
ATGGCAAGCAGTAAGGAAACAGTCGCTTGTCAAGAACTATTTGGCTCCGG
ACTTGGCTAAGATTCCCATCGACTTGTTCACCCGTTCAAAACATCAGAGT
ATGCCACAGTCCGCCACACCTTCCGCGAGCACTGGCCCTTTTTCACAGGG
TTTGCAATCACAACCACTCCCGTCGGTACTCCCTTCCGCCTCACAACCTC
AGCGAGCTATATTTCCAAGCTCGAGTATTAATGCAATACATCCGCAACCT
CCAGACCCAGATCCCGCAGTTGAAACTAATCCATCCATGTTACAAGGTGA
ATCTATTCTCATGCACCAGACATCCGAAGAGCTCAGCGACCTCTTCGCCA
CTTATGTCCCGGGTGTTATGAATACGGCTGATAGGGCCCCAATTCCTAGT
CTTGGAGCCATTCCAGACCTATCACAGTCAACATCTCTCCCTGTCTCCCA
TCTGCGCAACCCTCAACTTCAGTTAACCCAGCTTATGTCATCTGCACAGT
CGAATCCGAATCAACCAGTTGTGTCATCCCCTGTCAAGGATCCACAATCC
ATGCAACCGAACAACTCAACATCTCCAGATATCGGCAGTTCGGGGCGGGA
GAAATCTGGTGATGACCCATTCTCGGACATTGCTTATTGTGTGTGA

Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+

>Gcaud8386.t1 ID=Gcaud8386.t1|Name=Gcaud8386.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1146bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:14982..16127+ (Gracilaria caudata M_176_S67 male)
ATGCCGCCCTCACCTGAACCCGACCGAAAGCGTATCCGTACATGCACGTC
AGCTAAAGATGAGGTGAACACCTCAGACGTCGAAAATGCACGCAGCGAGT
TCTGTCCAACCCGTCCCCCACAGGCGGAGCGCAAGCGAGAGTTAGAACGA
AATCGTCGCAATCTTGTGAATATTCGCTTTATCGAGCTTGAAAAAGAGCT
CATTCGTTCGGGTCCGCGCGCGACAGACCCCTCGGACAAGGGGTCTGCGT
CGTCGTCCGAGTTTGTGGCGAAGGGCAAACGGATCGACAAGGAAGCTGTG
CTAAAAGAGGCTGCCCAACGTATAGCAGCCTTGCGGAAAGAAGTTGAGTC
ACAGGCCTCACGCATCGCGAGTATGACCGACGAAATTTCTCATCTGCGTG
CAGAGAAGTTGGAACTGCGAACTGACAAGAGCTACTTGCGTAGCGAGCTT
GAGAACGCTCGCAACGAAACTAAGCGTCTGCGCGTCGATAATATTGGTTT
ATGGCAAGCAGTAAGGAAACAGTCGCTTGTCAAGAACTATTTGGCTCCGG
ACTTGGCTAAGATTCCCATCGACTTGTTCACCCGTTCAAAACATCAGAGT
ATGCCACAGTCCGCCACACCTTCCGCGAGCACTGGCCCTTTTTCACAGGG
TTTGCAATCACAACCACTCCCGTCGGTACTCCCTTCCGCCTCACAACCTC
AGCGAGCTATATTTCCAAGCTCGAGTATTAATGCAATACATCCGCAACCT
CCAGACCCAGATCCCGCAGTTGAAACTAATCCATCCATGTTACAAGGTGA
ATCTATTCTCATGCACCAGACATCCGAAGAGCTCAGCGACCTCTTCGCCA
CTTATGTCCCGGGTGTTATGAATACGGCTGATAGGGCCCCAATTCCTAGT
CTTGGAGCCATTCCAGACCTATCACAGTCAACATCTCTCCCTGTCTCCCA
TCTGCGCAACCCTCAACTTCAGTTAACCCAGCTTATGTCATCTGCACAGT
CGAATCCGAATCAACCAGTTGTGTCATCCCCTGTCAAGGATCCACAATCC
ATGCAACCGAACAACTCAACATCTCCAGATATCGGCAGTTCGGGGCGGGA
GAAATCTGGTGATGACCCATTCTCGGACATTGCTTATTGTGTGTGA