Gcaud8384.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8384.t1
Unique Name	Gcaud8384.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	444

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_406_length_26511_cov_4.568963	contig	NODE_406_length_26511_cov_4.568963:8848..10354 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5346.XP_001833691.1
Preferred name	SRV2
PFAMs	CAP_C,CAP_N
Max annot lvl	4751\|Fungi
KEGG ko	ko:K17261
GOs	GO:0000902,GO:0000935,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005937,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007165,GO:0007264,GO:0007265,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008179,GO:0009653,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0019899,GO:0022411,GO:0023052,GO:0030029,GO:0030036,GO:0030042,GO:0030427,GO:0030428,GO:0030479,GO:0030832,GO:0030834,GO:0030836,GO:0030863,GO:0030864,GO:0031135,GO:0031137,GO:0031138,GO:0031279,GO:0032153,GO:0032155,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032984,GO:0032989,GO:0033043,GO:0035556,GO:0035838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043243,GO:0043244,GO:0043332,GO:0043624,GO:0043900,GO:0043901,GO:0043933,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044463,GO:0044464,GO:0045761,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051014,GO:0051128,GO:0051130,GO:0051261,GO:0051286,GO:0051339,GO:0051493,GO:0051495,GO:0051716,GO:0061645,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0099568,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901881,GO:1902903,GO:1902905,GO:2000241,GO:2000242
Evalue	2.39e-06
EggNOG OGs	KOG2675@1\|root,KOG2675@2759\|Eukaryota,38CGH@33154\|Opisthokonta,3NXBZ@4751\|Fungi,3UYXT@5204\|Basidiomycota,226DQ@155619\|Agaricomycetes,3W5G5@5338\|Agaricales
Description	Adenylyl cyclase-associated protein
COG category	TZ
BRITE	ko00000,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8384	Gcaud8384	Gracilaria caudata M_176_S67 male	gene	NODE_406_length_26511_cov_4.568963 8848..10354 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8384.t1	Gcaud8384.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_406_length_26511_cov_4.568963 8848..10354 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8384.t1.stop1	Gcaud8384.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_406_length_26511_cov_4.568963 8848..8850 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8384.t1.CDS1	Gcaud8384.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 8848..8905 -
Gcaud8384.t1.CDS2	Gcaud8384.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 9003..10194 -
Gcaud8384.t1.CDS3	Gcaud8384.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 10273..10354 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8384.t1.exon1	Gcaud8384.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 8848..8905 -
Gcaud8384.t1.exon2	Gcaud8384.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 9003..10194 -
Gcaud8384.t1.exon3	Gcaud8384.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 10273..10354 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8384.t1.intron1	Gcaud8384.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 8906..9002 -
Gcaud8384.t1.intron2	Gcaud8384.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 10195..10272 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8384.t1.start1	Gcaud8384.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_406_length_26511_cov_4.568963 10352..10354 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_406_length_26511_cov_4.568963:8848..10354-
coding sequence from alignment at NODE_406_length_26511_cov_4.568963:8848..10354-

mRNA sequence

>Gcaud8384.t1 ID=Gcaud8384.t1|Name=Gcaud8384.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=444bp
MAAVADPEGALDILERKIRSLEEFTIRKASLVRVENIAESLPKVVTTGRS
HIQAKVIDYDPGELFLKVLDPPIQQLKKAAQQIGQLGKEFGPPCETILEQ
TILFEASVKAEGALVTRASKMAKPSNPEVLKDECQDLIDKSADTAELKYD
IDARNPLHNHTMALADAAAALGWVVAPTPLKHTKDYKVVVNSLAEDILSR
YIDLGCNPVHSDFAEALNAVMEVLVKYVEKEHPAGLRWNYAQGSTPLGYR
RAKRVMRKDSHPIGDFYQLMHSGLTEFILLSRELGGVLRTISGYTQGTYE
EMAKVIETASNRTRPRTDMEAALRMLLVSVQHEYGPLVSTLDSVPEGDKF
YRHCQVFREFANCLLWCTATIQKMSPVGYIIDVENITLLYLGRLEKDLCT
DEGYISRQHRSWINSVRTMLKEMKDNWKRCGKSLRRRSGQEKR*

spliced messenger RNA

>Gcaud8384.t1 ID=Gcaud8384.t1|Name=Gcaud8384.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:8848..10354- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCAGTAGCTGATCCAGAGGGCGCCCTCGATATTCTGGAGCGGAA
GATTCGGTCGTTAGAAGAATTTACCATTAGGAAAGCTAGTCTGGTTCGAG
TCGAGAACATTGCCGAATCCCTTCCCAAAGTTGTAACAACAGGCCGATCA
CATATACAGGCGAAGGTCATCGACTATGATCCAGGAGAGCTCTTTCTCAA
AGTTCTTGATCCTCCAATCCAACAGCTCAAAAAAGCTGCTCAGCAAATCG
GTCAGCTTGGTAAGGAGTTTGGACCACCATGTGAAACCATACTTGAACAG
ACAATCCTCTTTGAGGCTAGTGTTAAGGCTGAAGGAGCACTTGTTACCAG
AGCATCTAAGATGGCAAAACCGTCCAATCCGGAAGTCCTCAAAGATGAAT
GTCAAGACCTTATTGACAAGAGTGCTGATACCGCAGAGTTGAAGTATGAC
ATCGACGCCCGAAATCCGTTGCACAACCATACAATGGCTCTAGCAGATGC
TGCGGCCGCTCTGGGCTGGGTTGTAGCCCCAACTCCCCTGAAGCATACCA
AGGATTACAAAGTCGTCGTCAACAGCCTCGCAGAAGATATCTTGTCCCGT
TATATTGACCTCGGATGTAATCCTGTTCACAGTGACTTTGCGGAAGCTTT
AAATGCAGTTATGGAAGTGTTGGTCAAGTACGTGGAGAAGGAACATCCCG
CTGGTCTAAGATGGAACTATGCTCAGGGTTCTACACCCCTTGGATATCGC
AGAGCGAAACGTGTTATGCGCAAAGACTCTCATCCAATTGGGGATTTCTA
CCAGCTAATGCACAGTGGTTTGACAGAGTTTATACTGCTTTCAAGAGAGC
TTGGAGGAGTGTTACGTACCATTAGCGGGTACACCCAGGGCACATATGAA
GAAATGGCGAAGGTGATCGAAACGGCTTCGAACAGAACTCGGCCAAGAAC
AGATATGGAAGCTGCGCTGCGAATGCTTCTTGTATCGGTTCAACATGAGT
ATGGTCCACTGGTATCCACCCTTGACAGCGTCCCTGAAGGCGACAAATTC
TATCGGCATTGTCAGGTATTCCGGGAATTTGCGAACTGCTTATTGTGGTG
CACGGCAACAATTCAGAAGATGTCTCCTGTGGGATATATCATCGATGTAG
AAAACATCACTCTTCTGTACTTGGGAAGGCTAGAGAAAGACTTGTGCACG
GATGAGGGATATATTTCACGACAGCATCGATCATGGATCAACAGCGTGCG
TACAATGCTGAAAGAAATGAAAGACAACTGGAAGAGATGCGGGAAAAGTC
TAAGACGGCGAAGTGGACAAGAAAAGCGTTAG

protein sequence of Gcaud8384.t1

>Gcaud8384.t1 ID=Gcaud8384.t1|Name=Gcaud8384.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=444bp
MAAVADPEGALDILERKIRSLEEFTIRKASLVRVENIAESLPKVVTTGRS
HIQAKVIDYDPGELFLKVLDPPIQQLKKAAQQIGQLGKEFGPPCETILEQ
TILFEASVKAEGALVTRASKMAKPSNPEVLKDECQDLIDKSADTAELKYD
IDARNPLHNHTMALADAAAALGWVVAPTPLKHTKDYKVVVNSLAEDILSR
YIDLGCNPVHSDFAEALNAVMEVLVKYVEKEHPAGLRWNYAQGSTPLGYR
RAKRVMRKDSHPIGDFYQLMHSGLTEFILLSRELGGVLRTISGYTQGTYE
EMAKVIETASNRTRPRTDMEAALRMLLVSVQHEYGPLVSTLDSVPEGDKF
YRHCQVFREFANCLLWCTATIQKMSPVGYIIDVENITLLYLGRLEKDLCT
DEGYISRQHRSWINSVRTMLKEMKDNWKRCGKSLRRRSGQEKR*

mRNA from alignment at NODE_406_length_26511_cov_4.568963:8848..10354-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8384.t1 ID=Gcaud8384.t1|Name=Gcaud8384.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1507bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:8848..10354- (Gracilaria caudata M_176_S67 male)
ATGGCCGCAGTAGCTGATCCAGAGGGCGCCCTCGATATTCTGGAGCGGAA
GATTCGGTCGTTAGAAGAATTTACCATTAGGAGTAAGCTCAAAGGCAAAT
CTCTACCACCCCTTCAGATTCGTACTTTCAGAAGTGAGCGCGCCATTAAC
AACGCCGTAGAAGCTAGTCTGGTTCGAGTCGAGAACATTGCCGAATCCCT
TCCCAAAGTTGTAACAACAGGCCGATCACATATACAGGCGAAGGTCATCG
ACTATGATCCAGGAGAGCTCTTTCTCAAAGTTCTTGATCCTCCAATCCAA
CAGCTCAAAAAAGCTGCTCAGCAAATCGGTCAGCTTGGTAAGGAGTTTGG
ACCACCATGTGAAACCATACTTGAACAGACAATCCTCTTTGAGGCTAGTG
TTAAGGCTGAAGGAGCACTTGTTACCAGAGCATCTAAGATGGCAAAACCG
TCCAATCCGGAAGTCCTCAAAGATGAATGTCAAGACCTTATTGACAAGAG
TGCTGATACCGCAGAGTTGAAGTATGACATCGACGCCCGAAATCCGTTGC
ACAACCATACAATGGCTCTAGCAGATGCTGCGGCCGCTCTGGGCTGGGTT
GTAGCCCCAACTCCCCTGAAGCATACCAAGGATTACAAAGTCGTCGTCAA
CAGCCTCGCAGAAGATATCTTGTCCCGTTATATTGACCTCGGATGTAATC
CTGTTCACAGTGACTTTGCGGAAGCTTTAAATGCAGTTATGGAAGTGTTG
GTCAAGTACGTGGAGAAGGAACATCCCGCTGGTCTAAGATGGAACTATGC
TCAGGGTTCTACACCCCTTGGATATCGCAGAGCGAAACGTGTTATGCGCA
AAGACTCTCATCCAATTGGGGATTTCTACCAGCTAATGCACAGTGGTTTG
ACAGAGTTTATACTGCTTTCAAGAGAGCTTGGAGGAGTGTTACGTACCAT
TAGCGGGTACACCCAGGGCACATATGAAGAAATGGCGAAGGTGATCGAAA
CGGCTTCGAACAGAACTCGGCCAAGAACAGATATGGAAGCTGCGCTGCGA
ATGCTTCTTGTATCGGTTCAACATGAGTATGGTCCACTGGTATCCACCCT
TGACAGCGTCCCTGAAGGCGACAAATTCTATCGGCATTGTCAGGTATTCC
GGGAATTTGCGAACTGCTTATTGTGGTGCACGGCAACAATTCAGAAGATG
TCTCCTGTGGGATATATCATCGATGTAGAAAACATCACTCTTCTGTACTT
GGGAAGGCTAGAGAAAGACTTGTGCACGGATGAGGGATATATTTCACGAC
AGCATCGATCATGGATCAACAGCGTGCGTACAATGCTGAAAGAAATGAAA
GAGTACGTCAAACTTCATCATCCTAATGAGCTAGTGTTTGACACACAAAG
ATCGCGAAAATCGGTAGATGCCCTAATCGCGAGCGTTTCTATCACTAAGC
AACTGGAAGAGATGCGGGAAAAGTCTAAGACGGCGAAGTGGACAAGAAAA
GCGTTAG

Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:8848..10354-

>Gcaud8384.t1 ID=Gcaud8384.t1|Name=Gcaud8384.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1332bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:8848..10354- (Gracilaria caudata M_176_S67 male)
ATGGCCGCAGTAGCTGATCCAGAGGGCGCCCTCGATATTCTGGAGCGGAA
GATTCGGTCGTTAGAAGAATTTACCATTAGGAAAGCTAGTCTGGTTCGAG
TCGAGAACATTGCCGAATCCCTTCCCAAAGTTGTAACAACAGGCCGATCA
CATATACAGGCGAAGGTCATCGACTATGATCCAGGAGAGCTCTTTCTCAA
AGTTCTTGATCCTCCAATCCAACAGCTCAAAAAAGCTGCTCAGCAAATCG
GTCAGCTTGGTAAGGAGTTTGGACCACCATGTGAAACCATACTTGAACAG
ACAATCCTCTTTGAGGCTAGTGTTAAGGCTGAAGGAGCACTTGTTACCAG
AGCATCTAAGATGGCAAAACCGTCCAATCCGGAAGTCCTCAAAGATGAAT
GTCAAGACCTTATTGACAAGAGTGCTGATACCGCAGAGTTGAAGTATGAC
ATCGACGCCCGAAATCCGTTGCACAACCATACAATGGCTCTAGCAGATGC
TGCGGCCGCTCTGGGCTGGGTTGTAGCCCCAACTCCCCTGAAGCATACCA
AGGATTACAAAGTCGTCGTCAACAGCCTCGCAGAAGATATCTTGTCCCGT
TATATTGACCTCGGATGTAATCCTGTTCACAGTGACTTTGCGGAAGCTTT
AAATGCAGTTATGGAAGTGTTGGTCAAGTACGTGGAGAAGGAACATCCCG
CTGGTCTAAGATGGAACTATGCTCAGGGTTCTACACCCCTTGGATATCGC
AGAGCGAAACGTGTTATGCGCAAAGACTCTCATCCAATTGGGGATTTCTA
CCAGCTAATGCACAGTGGTTTGACAGAGTTTATACTGCTTTCAAGAGAGC
TTGGAGGAGTGTTACGTACCATTAGCGGGTACACCCAGGGCACATATGAA
GAAATGGCGAAGGTGATCGAAACGGCTTCGAACAGAACTCGGCCAAGAAC
AGATATGGAAGCTGCGCTGCGAATGCTTCTTGTATCGGTTCAACATGAGT
ATGGTCCACTGGTATCCACCCTTGACAGCGTCCCTGAAGGCGACAAATTC
TATCGGCATTGTCAGGTATTCCGGGAATTTGCGAACTGCTTATTGTGGTG
CACGGCAACAATTCAGAAGATGTCTCCTGTGGGATATATCATCGATGTAG
AAAACATCACTCTTCTGTACTTGGGAAGGCTAGAGAAAGACTTGTGCACG
GATGAGGGATATATTTCACGACAGCATCGATCATGGATCAACAGCGTGCG
TACAATGCTGAAAGAAATGAAAGACAACTGGAAGAGATGCGGGAAAAGTC
TAAGACGGCGAAGTGGACAAGAAAAGCGTTAG