Gcaud7399.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7399.t1
Unique NameGcaud7399.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length12
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1113_length_13659_cov_4.120357contigNODE_1113_length_13659_cov_4.120357:72..260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7399Gcaud7399Gracilaria caudata M_176_S67 malegeneNODE_1113_length_13659_cov_4.120357 72..260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7399.t1Gcaud7399.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1113_length_13659_cov_4.120357 72..260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7399.t1.CDS1Gcaud7399.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1113_length_13659_cov_4.120357 72..76 +
Gcaud7399.t1.CDS2Gcaud7399.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1113_length_13659_cov_4.120357 231..260 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7399.t1.exon1Gcaud7399.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1113_length_13659_cov_4.120357 72..76 +
Gcaud7399.t1.exon2Gcaud7399.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1113_length_13659_cov_4.120357 231..260 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7399.t1.intron1Gcaud7399.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1113_length_13659_cov_4.120357 77..230 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7399.t1.stop1Gcaud7399.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1113_length_13659_cov_4.120357 258..260 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7399.t1 ID=Gcaud7399.t1|Name=Gcaud7399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=12bp
XNQAGGCFSNM*
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spliced messenger RNA

>Gcaud7399.t1 ID=Gcaud7399.t1|Name=Gcaud7399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=35bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:72..260+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
acaatCAAGCCGGTGGTTGTTTCAGTAATATGTAG
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protein sequence of Gcaud7399.t1

>Gcaud7399.t1 ID=Gcaud7399.t1|Name=Gcaud7399.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=12bp
XNQAGGCFSNM*
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mRNA from alignment at NODE_1113_length_13659_cov_4.120357:72..260+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7399.t1 ID=Gcaud7399.t1|Name=Gcaud7399.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=189bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:72..260+ (Gracilaria caudata M_176_S67 male)
acaatgtaggtttggTTTTTGGGACTAACGATGGTAACATCAATACCCAA
GGGTTGCTCCGCTAACCTTGGATCGTCAATTAGCAGGTCCAAGCGCTGTT
GCTGCACTTCTGGTAGATGACCCTGACATGGAAATCGCCACTCTCTTTCT
ACATGCAAGCAAGCCGGTGGTTGTTTCAGTAATATGTAG
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Coding sequence (CDS) from alignment at NODE_1113_length_13659_cov_4.120357:72..260+

>Gcaud7399.t1 ID=Gcaud7399.t1|Name=Gcaud7399.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=35bp|location=Sequence derived from alignment at NODE_1113_length_13659_cov_4.120357:72..260+ (Gracilaria caudata M_176_S67 male)
acaatCAAGCCGGTGGTTGTTTCAGTAATATGTAG
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