Gcaud1707.t3 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1707.t3
Unique Name	Gcaud1707.t3
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3969_length_2728_cov_4.393629	contig	NODE_3969_length_2728_cov_4.393629:578..2017 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1707	Gcaud1707	Gracilaria caudata M_176_S67 male	gene	NODE_3969_length_2728_cov_4.393629 578..2728 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1707.t3.start1	Gcaud1707.t3.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3969_length_2728_cov_4.393629 578..580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1707.t3.CDS1	Gcaud1707.t3.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3969_length_2728_cov_4.393629 578..2017 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1707.t3.exon1	Gcaud1707.t3.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3969_length_2728_cov_4.393629 578..2017 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1707.t3	Gcaud1707.t3	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3969_length_2728_cov_4.393629 578..2017 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+
coding sequence from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+

mRNA sequence

>Gcaud1707.t3 ID=Gcaud1707.t3|Name=Gcaud1707.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
MFEVENSGLLKQQPRVRNQTSNLHEESGMAQLVSIMSGTKQHVVRYDEVQ
ARVLKHAMLLIRGALPSYALRLQSIIHDGCGDSLPDSQEDLLALADRLSK
EAECDVERVALLYESAALEYGRVDEGREPLSKCLNFLFAHESAAKTPKRI
VNVLLRYMSTILPEGEKSTSNLSSERRKTLLEVAYPACEQVVRQYGLCLR
QEVDEKLFRCLLLLQLCDRGTKNTENIRSLMEVILVSSQSSTYLLPTYAD
SFGYPAERSSEPGDAVMRAPLPVKEDFRVKYLILEMAVQYLPRDRDVLNS
LAKLLSKGAFGVRRDAVRAKALYERALHEDERALMSGRIIVSDRTTIEGG
HIDAMYNLANLLAAGAPGVPQDAPSAVKLYERAIKVGGHPGAMSKLASLL
TNGAPGVAVNASRAAELYRRAIEEGGRADAMYYLANLLTVGAAGVNVNFE
RAAQYLELSVLQYGNTDAMVALAWLMSSRS

spliced messenger RNA

>Gcaud1707.t3 ID=Gcaud1707.t3|Name=Gcaud1707.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAGGTAGAGAACAGTGGTTTGCTCAAGCAGCAGCCTCGAGTTCG
TAACCAGACTTCAAACCTACACGAGGAAAGTGGTATGGCACAATTAGTGA
GCATCATGTCAGGTACGAAACAGCATGTAGTAAGATATGACGAAGTTCAG
GCGAGAGTTTTGAAACACGCAATGTTGCTGATTCGCGGCGCCCTTCCATC
CTATGCACTCCGTTTGCAAAGCATCATCCATGATGGATGCGGGGACAGCC
TACCAGACTCGCAAGAGGATTTATTAGCCCTTGCTGATCGGTTAAGCAAA
GAAGCAGAGTGTGATGTCGAAAGAGTAGCACTGCTCTACGAATCAGCAGC
ACTGGAATATGGAAGGGTGGATGAAGGCCGTGAACCATTGTCAAAATGTC
TGAACTTTCTCTTTGCTCACGAGTCTGCAGCCAAAACCCCGAAAAGAATC
GTAAACGTCTTACTTCGATATATGTCTACAATTCTCCCAGAAGGAGAGAA
AAGCACCTCGAATTTGTCATCAGAAAGGCGCAAAACTCTTTTGGAAGTTG
CATATCCAGCGTGCGAACAGGTAGTGAGACAATATGGTCTCTGCTTGCGG
CAAGAGGTGGATGAAAAACTCTTTCGGTGCTTGCTACTTCTTCAACTGTG
CGACAGAGGTACAAAAAATACTGAGAACATACGTTCGCTCATGGAAGTTA
TCCTAGTGTCATCTCAATCTAGCACCTATTTGCTGCCCACATATGCAGAT
TCTTTCGGATATCCCGCTGAAAGGAGTTCCGAGCCCGGAGATGCAGTAAT
GAGAGCGCCGCTGCCCGTCAAAGAGGACTTCCGAGTCAAGTACTTGATTC
TTGAAATGGCCGTGCAGTACCTACCGAGGGATAGAGACGTTTTGAATTCA
TTGGCAAAACTTCTCTCTAAGGGGGCTTTTGGAGTTCGTAGAGATGCTGT
GCGAGCCAAGGCGCTTTACGAAAGAGCTCTTCACGAAGACGAAAGAGCAC
TTATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCATTGAGGGTGGA
CACATCGATGCAATGTACAATTTGGCGAACTTGCTTGCAGCAGGAGCCCC
AGGAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTATGAACGTGCCA
TAAAAGTGGGCGGACATCCTGGAGCCATGTCCAAGTTAGCCAGTCTGCTG
ACAAACGGAGCACCAGGGGTAGCCGTGAACGCGTCAAGAGCTGCAGAGCT
TTATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCCATGTACTACC
TAGCAAACTTATTAACGGTGGGCGCAGCTGGAGTGAATGTGAACTTTGAA
CGAGCCGCGCAGTACTTGGAGCTTTCAGTGCTTCAATACGGTAACACGGA
TGCGATGGTGGCACTCGCATGGCTGATGAGTTCTAGATCG

protein sequence of Gcaud1707.t3

>Gcaud1707.t3 ID=Gcaud1707.t3|Name=Gcaud1707.t3|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
MFEVENSGLLKQQPRVRNQTSNLHEESGMAQLVSIMSGTKQHVVRYDEVQ
ARVLKHAMLLIRGALPSYALRLQSIIHDGCGDSLPDSQEDLLALADRLSK
EAECDVERVALLYESAALEYGRVDEGREPLSKCLNFLFAHESAAKTPKRI
VNVLLRYMSTILPEGEKSTSNLSSERRKTLLEVAYPACEQVVRQYGLCLR
QEVDEKLFRCLLLLQLCDRGTKNTENIRSLMEVILVSSQSSTYLLPTYAD
SFGYPAERSSEPGDAVMRAPLPVKEDFRVKYLILEMAVQYLPRDRDVLNS
LAKLLSKGAFGVRRDAVRAKALYERALHEDERALMSGRIIVSDRTTIEGG
HIDAMYNLANLLAAGAPGVPQDAPSAVKLYERAIKVGGHPGAMSKLASLL
TNGAPGVAVNASRAAELYRRAIEEGGRADAMYYLANLLTVGAAGVNVNFE
RAAQYLELSVLQYGNTDAMVALAWLMSSRS

mRNA from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1707.t3 ID=Gcaud1707.t3|Name=Gcaud1707.t3|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+ (Gracilaria caudata M_176_S67 male)
ATGTTTGAGGTAGAGAACAGTGGTTTGCTCAAGCAGCAGCCTCGAGTTCG
TAACCAGACTTCAAACCTACACGAGGAAAGTGGTATGGCACAATTAGTGA
GCATCATGTCAGGTACGAAACAGCATGTAGTAAGATATGACGAAGTTCAG
GCGAGAGTTTTGAAACACGCAATGTTGCTGATTCGCGGCGCCCTTCCATC
CTATGCACTCCGTTTGCAAAGCATCATCCATGATGGATGCGGGGACAGCC
TACCAGACTCGCAAGAGGATTTATTAGCCCTTGCTGATCGGTTAAGCAAA
GAAGCAGAGTGTGATGTCGAAAGAGTAGCACTGCTCTACGAATCAGCAGC
ACTGGAATATGGAAGGGTGGATGAAGGCCGTGAACCATTGTCAAAATGTC
TGAACTTTCTCTTTGCTCACGAGTCTGCAGCCAAAACCCCGAAAAGAATC
GTAAACGTCTTACTTCGATATATGTCTACAATTCTCCCAGAAGGAGAGAA
AAGCACCTCGAATTTGTCATCAGAAAGGCGCAAAACTCTTTTGGAAGTTG
CATATCCAGCGTGCGAACAGGTAGTGAGACAATATGGTCTCTGCTTGCGG
CAAGAGGTGGATGAAAAACTCTTTCGGTGCTTGCTACTTCTTCAACTGTG
CGACAGAGGTACAAAAAATACTGAGAACATACGTTCGCTCATGGAAGTTA
TCCTAGTGTCATCTCAATCTAGCACCTATTTGCTGCCCACATATGCAGAT
TCTTTCGGATATCCCGCTGAAAGGAGTTCCGAGCCCGGAGATGCAGTAAT
GAGAGCGCCGCTGCCCGTCAAAGAGGACTTCCGAGTCAAGTACTTGATTC
TTGAAATGGCCGTGCAGTACCTACCGAGGGATAGAGACGTTTTGAATTCA
TTGGCAAAACTTCTCTCTAAGGGGGCTTTTGGAGTTCGTAGAGATGCTGT
GCGAGCCAAGGCGCTTTACGAAAGAGCTCTTCACGAAGACGAAAGAGCAC
TTATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCATTGAGGGTGGA
CACATCGATGCAATGTACAATTTGGCGAACTTGCTTGCAGCAGGAGCCCC
AGGAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTATGAACGTGCCA
TAAAAGTGGGCGGACATCCTGGAGCCATGTCCAAGTTAGCCAGTCTGCTG
ACAAACGGAGCACCAGGGGTAGCCGTGAACGCGTCAAGAGCTGCAGAGCT
TTATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCCATGTACTACC
TAGCAAACTTATTAACGGTGGGCGCAGCTGGAGTGAATGTGAACTTTGAA
CGAGCCGCGCAGTACTTGGAGCTTTCAGTGCTTCAATACGGTAACACGGA
TGCGATGGTGGCACTCGCATGGCTGATGAGTTCTAGATCG

Coding sequence (CDS) from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+

>Gcaud1707.t3 ID=Gcaud1707.t3|Name=Gcaud1707.t3|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:578..2017+ (Gracilaria caudata M_176_S67 male)
ATGTTTGAGGTAGAGAACAGTGGTTTGCTCAAGCAGCAGCCTCGAGTTCG
TAACCAGACTTCAAACCTACACGAGGAAAGTGGTATGGCACAATTAGTGA
GCATCATGTCAGGTACGAAACAGCATGTAGTAAGATATGACGAAGTTCAG
GCGAGAGTTTTGAAACACGCAATGTTGCTGATTCGCGGCGCCCTTCCATC
CTATGCACTCCGTTTGCAAAGCATCATCCATGATGGATGCGGGGACAGCC
TACCAGACTCGCAAGAGGATTTATTAGCCCTTGCTGATCGGTTAAGCAAA
GAAGCAGAGTGTGATGTCGAAAGAGTAGCACTGCTCTACGAATCAGCAGC
ACTGGAATATGGAAGGGTGGATGAAGGCCGTGAACCATTGTCAAAATGTC
TGAACTTTCTCTTTGCTCACGAGTCTGCAGCCAAAACCCCGAAAAGAATC
GTAAACGTCTTACTTCGATATATGTCTACAATTCTCCCAGAAGGAGAGAA
AAGCACCTCGAATTTGTCATCAGAAAGGCGCAAAACTCTTTTGGAAGTTG
CATATCCAGCGTGCGAACAGGTAGTGAGACAATATGGTCTCTGCTTGCGG
CAAGAGGTGGATGAAAAACTCTTTCGGTGCTTGCTACTTCTTCAACTGTG
CGACAGAGGTACAAAAAATACTGAGAACATACGTTCGCTCATGGAAGTTA
TCCTAGTGTCATCTCAATCTAGCACCTATTTGCTGCCCACATATGCAGAT
TCTTTCGGATATCCCGCTGAAAGGAGTTCCGAGCCCGGAGATGCAGTAAT
GAGAGCGCCGCTGCCCGTCAAAGAGGACTTCCGAGTCAAGTACTTGATTC
TTGAAATGGCCGTGCAGTACCTACCGAGGGATAGAGACGTTTTGAATTCA
TTGGCAAAACTTCTCTCTAAGGGGGCTTTTGGAGTTCGTAGAGATGCTGT
GCGAGCCAAGGCGCTTTACGAAAGAGCTCTTCACGAAGACGAAAGAGCAC
TTATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCATTGAGGGTGGA
CACATCGATGCAATGTACAATTTGGCGAACTTGCTTGCAGCAGGAGCCCC
AGGAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTATGAACGTGCCA
TAAAAGTGGGCGGACATCCTGGAGCCATGTCCAAGTTAGCCAGTCTGCTG
ACAAACGGAGCACCAGGGGTAGCCGTGAACGCGTCAAGAGCTGCAGAGCT
TTATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCCATGTACTACC
TAGCAAACTTATTAACGGTGGGCGCAGCTGGAGTGAATGTGAACTTTGAA
CGAGCCGCGCAGTACTTGGAGCTTTCAGTGCTTCAATACGGTAACACGGA
TGCGATGGTGGCACTCGCATGGCTGATGAGTTCTAGATCG