Gcaud1706.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1706.t1
Unique NameGcaud1706.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3969_length_2728_cov_4.393629contigNODE_3969_length_2728_cov_4.393629:2..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1706Gcaud1706Gracilaria caudata M_176_S67 malegeneNODE_3969_length_2728_cov_4.393629 2..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1706.t1Gcaud1706.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3969_length_2728_cov_4.393629 2..490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1706.t1.CDS1Gcaud1706.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3969_length_2728_cov_4.393629 2..252 +
Gcaud1706.t1.CDS2Gcaud1706.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_3969_length_2728_cov_4.393629 410..490 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1706.t1.exon1Gcaud1706.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3969_length_2728_cov_4.393629 2..252 +
Gcaud1706.t1.exon2Gcaud1706.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_3969_length_2728_cov_4.393629 410..490 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1706.t1.intron1Gcaud1706.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_3969_length_2728_cov_4.393629 253..409 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1706.t1.stop1Gcaud1706.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_3969_length_2728_cov_4.393629 488..490 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1706.t1 ID=Gcaud1706.t1|Name=Gcaud1706.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=111bp
XIEENLRPELDEEDQSESPPEGPGSAKTILQCILSFPSLHIKTEVKDYHE
PGVSQYDSQIIHLEYDDGDQASAQRKYDSFKTVEEDLREEKNGEKTTLPG
TSTFLYRRKR*
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spliced messenger RNA

>Gcaud1706.t1 ID=Gcaud1706.t1|Name=Gcaud1706.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=332bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:2..490+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGATTGAAGAAAATTTGAGACCGGAGCTCGATGAAGAAGATCAATCGGAG
TCCCCACCCGAGGGACCAGGAAGTGCGAAGACCATCTTGCAATGCATTCT
TTCATTCCCCTCCTTGCACATCAAGACTGAAGTGAAAGATTACCACGAGC
CCGGGGTTTCTCAATATGATTCTCAAATAATCCACTTGGAGTATGATGAT
GGCGATCAGGCTTCTGCTCAACGTAAATATGATTCTTTCAAAACAGTTGA
AGAAGACTTGAGGGAAGAGAAAAATGGAGAAAAGACCACGTTGCCAGGGA
CGTCAACCTTTTTATATCGAAGGAAAAGATGA
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protein sequence of Gcaud1706.t1

>Gcaud1706.t1 ID=Gcaud1706.t1|Name=Gcaud1706.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=111bp
XIEENLRPELDEEDQSESPPEGPGSAKTILQCILSFPSLHIKTEVKDYHE
PGVSQYDSQIIHLEYDDGDQASAQRKYDSFKTVEEDLREEKNGEKTTLPG
TSTFLYRRKR*
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mRNA from alignment at NODE_3969_length_2728_cov_4.393629:2..490+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1706.t1 ID=Gcaud1706.t1|Name=Gcaud1706.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=489bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:2..490+ (Gracilaria caudata M_176_S67 male)
AGATTGAAGAAAATTTGAGACCGGAGCTCGATGAAGAAGATCAATCGGAG
TCCCCACCCGAGGGACCAGGAAGTGCGAAGACCATCTTGCAATGCATTCT
TTCATTCCCCTCCTTGCACATCAAGACTGAAGTGAAAGATTACCACGAGC
CCGGGGTTTCTCAATATGATTCTCAAATAATCCACTTGGAGTATGATGAT
GGCGATCAGGCTTCTGCTCAACGTAAATATGATTCTTTCAAAACAGTTGA
AGTAAGTATAGTTCCCATTTGTGCTCCACAGGACTGCGTCGTTGTTCTTC
GATTCCATTCCAATGATCCATATCATCGTTTGGTTACATCTATGGCGATA
AAATGGGAAGACAGATCTACTTACTTTAGGTGGGAGCTATGGCGAGATGC
ATTCTTAGGAAGACTTGAGGGAAGAGAAAAATGGAGAAAAGACCACGTTG
CCAGGGACGTCAACCTTTTTATATCGAAGGAAAAGATGA
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Coding sequence (CDS) from alignment at NODE_3969_length_2728_cov_4.393629:2..490+

>Gcaud1706.t1 ID=Gcaud1706.t1|Name=Gcaud1706.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=332bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:2..490+ (Gracilaria caudata M_176_S67 male)
AGATTGAAGAAAATTTGAGACCGGAGCTCGATGAAGAAGATCAATCGGAG
TCCCCACCCGAGGGACCAGGAAGTGCGAAGACCATCTTGCAATGCATTCT
TTCATTCCCCTCCTTGCACATCAAGACTGAAGTGAAAGATTACCACGAGC
CCGGGGTTTCTCAATATGATTCTCAAATAATCCACTTGGAGTATGATGAT
GGCGATCAGGCTTCTGCTCAACGTAAATATGATTCTTTCAAAACAGTTGA
AGAAGACTTGAGGGAAGAGAAAAATGGAGAAAAGACCACGTTGCCAGGGA
CGTCAACCTTTTTATATCGAAGGAAAAGATGA
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