Gcaud1745.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1745.t1
Unique NameGcaud1745.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length835
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3966_length_2730_cov_13.267905contigNODE_3966_length_2730_cov_13.267905:2..2506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1142394.PSMK_27300
Preferred namequeH
PFAMsDUF208
Max annot lvl2|Bacteria
KEGG koko:K03470,ko:K09765
KEGG Pathwayko03030,map03030
Evalue3.9e-16
EggNOG OGsCOG1636@1|root,COG1636@2|Bacteria
EC1.17.99.6,3.1.26.4
Descriptionqueuosine biosynthetic process
COG categoryC
BRITEko00000,ko00001,ko01000,ko03016,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1745Gcaud1745Gracilaria caudata M_176_S67 malegeneNODE_3966_length_2730_cov_13.267905 2..2506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1745.t1.CDS1Gcaud1745.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3966_length_2730_cov_13.267905 2..2506 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1745.t1.exon1Gcaud1745.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3966_length_2730_cov_13.267905 2..2506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1745.t1.start1Gcaud1745.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3966_length_2730_cov_13.267905 2504..2506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1745.t1Gcaud1745.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3966_length_2730_cov_13.267905 2..2506 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=835bp
MKMSGGLFLVVWGCCTALAISAQVLSTDGLKEAKVNGVSMFMKSGPHRSL
FGKAAITPAPSTAFKGSVHPRILFDGSGWEEMLERYSNEDTFDMKTSWSH
FSRRTSLHLAESNPILKRLIEMERNGETAVYSGKEDLSSASREQLDELEQ
LASHVMNMSEGYSQSFFICALWSSVNEKVMKERGREESFMKTSVEDCVKA
SVAWAKVLLAHRAVNCAGKCTSGASGSRAFLWDEERWFQVQNDWYSAGAS
LALTLDVLYDRFADEERRVVVSALAMLMYKQTSWGTAVESSRNSPNAAQH
PHRIFSNWALYHGHLYITNLVLEGEHDFDAYASAVLSSSGVDGFNAGLDK
RFTALIRAYMTHAVYPDGATFEDAYTYFIALREGSLALVAAERRGLGMID
TERFRGLIHNAAQMMEPWQCARIVGHSSGGGLSYPAWAALFKYAYPEGAL
PQMVWKQRMGKHFKNNNPCRIQWVQNLMHVLVMGMEHGSSTYAESPQGLE
EEFKKHFALSYLSPRRGLLIARSSEAEDALYVHFDARPDAMFPGHDNADR
GVFTLTAFKTAWIDDYAWRYNIDSRKHSLLHVDGLAQDAKAPSVHMVRTE
DSGTQVIAVANLTYAYNVEWARNWPYDKAPMARVTVYDDEGRERQVGKMF
DVAEYGHPHDFGWPADDDGEDLGFTREGFNMHGDADVGFRGMWTWKRAYR
ETPLAWMVRSVILNRAGGGPGFFMVVDSARVSGAAVKNKFESYLALGDKV
KVESESSSCEGNRCRIVLVDDGIAQVDVHVVTIGKSASYRTETFKSDAEH
TMLIVRSDNEKEEVFWMAFHAHLGEPERFSMEPIS
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spliced messenger RNA

>Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2505bp|location=Sequence derived from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATGAGTGGAGGATTGTTCTTGGTAGTGTGGGGTTGTTGTACAGC
ATTGGCGATATCGGCGCAAGTGTTATCTACGGATGGATTGAAGGAAGCGA
AGGTGAATGGTGTGAGCATGTTCATGAAGTCCGGACCGCATCGCTCGCTG
TTTGGGAAGGCGGCCATTACTCCTGCTCCATCGACTGCGTTTAAGGGTAG
TGTTCATCCTCGGATACTGTTTGACGGGAGCGGATGGGAGGAGATGTTAG
AACGTTATTCGAACGAGGATACTTTTGACATGAAGACATCATGGTCTCAC
TTTTCTCGGCGGACGTCATTGCATCTGGCGGAATCGAATCCGATTCTAAA
GCGGCTGATCGAAATGGAACGTAATGGGGAAACGGCAGTGTACAGTGGGA
AGGAGGATTTGTCGTCTGCGTCGCGGGAGCAGTTGGATGAGCTCGAACAG
CTGGCGAGTCACGTGATGAACATGTCGGAAGGGTACTCACAGAGCTTCTT
TATATGCGCGTTGTGGAGCAGTGTGAACGAGAAGGTGATGAAGGAACGGG
GTCGGGAGGAGTCGTTCATGAAGACGAGTGTGGAAGACTGCGTGAAGGCA
TCTGTGGCATGGGCGAAGGTGCTGCTTGCGCATCGGGCGGTGAACTGCGC
GGGAAAGTGTACGAGTGGAGCAAGTGGGAGTCGTGCGTTCCTGTGGGACG
AGGAGCGTTGGTTCCAGGTTCAGAATGACTGGTACTCTGCCGGAGCTAGT
CTGGCGCTCACTTTGGACGTGCTGTACGACCGATTCGCAGATGAGGAACG
ACGAGTGGTGGTGAGCGCATTGGCGATGCTGATGTACAAGCAGACTTCGT
GGGGAACGGCAGTGGAAAGCTCACGCAACTCACCGAACGCAGCGCAACAC
CCGCACCGGATATTCAGCAACTGGGCGTTGTACCATGGACATCTGTACAT
TACTAACTTGGTGTTGGAGGGAGAGCACGACTTCGATGCGTACGCGTCTG
CTGTGTTGTCTTCGAGCGGAGTGGACGGGTTCAACGCGGGTCTGGATAAG
CGGTTCACGGCGTTGATCAGGGCGTACATGACGCATGCTGTGTATCCGGA
CGGAGCGACGTTTGAGGACGCGTACACGTACTTCATTGCTCTACGGGAGG
GGTCGCTGGCGCTGGTTGCGGCTGAACGGCGGGGACTGGGGATGATTGAC
ACGGAGCGATTCCGAGGTCTGATCCACAACGCAGCCCAGATGATGGAGCC
GTGGCAATGTGCGCGGATCGTGGGTCACTCGTCTGGAGGAGGACTGTCGT
ATCCGGCTTGGGCTGCGCTTTTCAAGTACGCGTACCCCGAGGGCGCTCTG
CCGCAAATGGTTTGGAAGCAGAGGATGGGGAAGCATTTCAAGAACAACAA
CCCGTGTCGGATCCAGTGGGTGCAGAACCTGATGCACGTTCTTGTGATGG
GAATGGAGCACGGAAGTTCGACGTACGCGGAGTCGCCGCAGGGTCTCGAA
GAGGAGTTCAAGAAGCACTTTGCGCTGTCGTACTTGAGCCCTCGTCGGGG
GCTGCTTATTGCGAGGAGCAGTGAGGCGGAGGACGCGCTGTACGTGCACT
TTGATGCGCGCCCCGACGCGATGTTCCCCGGGCACGACAACGCTGATCGC
GGAGTGTTTACGCTGACGGCGTTCAAGACTGCGTGGATCGACGACTATGC
GTGGAGGTACAACATCGACTCGAGAAAGCATTCGCTGCTGCATGTGGACG
GTTTGGCGCAGGACGCCAAGGCACCATCGGTACACATGGTTCGAACGGAG
GACAGTGGCACGCAGGTGATTGCAGTAGCGAACCTGACTTATGCTTATAA
CGTGGAATGGGCGAGGAACTGGCCGTATGACAAGGCGCCCATGGCGAGGG
TGACGGTGTACGACGATGAGGGGAGAGAGAGGCAGGTGGGAAAAATGTTT
GATGTGGCGGAATACGGACACCCGCACGACTTTGGATGGCCTGCTGATGA
CGATGGGGAGGACCTGGGATTCACTCGGGAGGGGTTCAACATGCACGGGG
ATGCGGATGTAGGGTTCCGAGGTATGTGGACGTGGAAACGGGCGTACCGA
GAGACACCGCTGGCGTGGATGGTACGGTCTGTGATTCTGAACCGGGCAGG
AGGCGGGCCGGGGTTTTTCATGGTTGTGGACTCTGCGAGAGTGTCTGGGG
CGGCAGTGAAGAACAAATTCGAATCGTACCTTGCACTTGGAGACAAGGTG
AAGGTGGAGAGCGAATCGTCGAGTTGCGAAGGGAATCGGTGCAGGATCGT
GTTAGTGGACGATGGGATTGCACAGGTGGATGTGCATGTTGTGACGATTG
GGAAATCGGCATCGTATCGGACGGAGACTTTCAAGAGCGACGCGGAACAC
ACAATGCTTATTGTACGAAGCGACAACGAGAAGGAGGAAGTGTTTTGGAT
GGCATTCCATGCTCACCTGGGAGAACCAGAGCGCTTTTCGATGGAACCGA
TTTCG
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protein sequence of Gcaud1745.t1

>Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=835bp
MKMSGGLFLVVWGCCTALAISAQVLSTDGLKEAKVNGVSMFMKSGPHRSL
FGKAAITPAPSTAFKGSVHPRILFDGSGWEEMLERYSNEDTFDMKTSWSH
FSRRTSLHLAESNPILKRLIEMERNGETAVYSGKEDLSSASREQLDELEQ
LASHVMNMSEGYSQSFFICALWSSVNEKVMKERGREESFMKTSVEDCVKA
SVAWAKVLLAHRAVNCAGKCTSGASGSRAFLWDEERWFQVQNDWYSAGAS
LALTLDVLYDRFADEERRVVVSALAMLMYKQTSWGTAVESSRNSPNAAQH
PHRIFSNWALYHGHLYITNLVLEGEHDFDAYASAVLSSSGVDGFNAGLDK
RFTALIRAYMTHAVYPDGATFEDAYTYFIALREGSLALVAAERRGLGMID
TERFRGLIHNAAQMMEPWQCARIVGHSSGGGLSYPAWAALFKYAYPEGAL
PQMVWKQRMGKHFKNNNPCRIQWVQNLMHVLVMGMEHGSSTYAESPQGLE
EEFKKHFALSYLSPRRGLLIARSSEAEDALYVHFDARPDAMFPGHDNADR
GVFTLTAFKTAWIDDYAWRYNIDSRKHSLLHVDGLAQDAKAPSVHMVRTE
DSGTQVIAVANLTYAYNVEWARNWPYDKAPMARVTVYDDEGRERQVGKMF
DVAEYGHPHDFGWPADDDGEDLGFTREGFNMHGDADVGFRGMWTWKRAYR
ETPLAWMVRSVILNRAGGGPGFFMVVDSARVSGAAVKNKFESYLALGDKV
KVESESSSCEGNRCRIVLVDDGIAQVDVHVVTIGKSASYRTETFKSDAEH
TMLIVRSDNEKEEVFWMAFHAHLGEPERFSMEPIS
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mRNA from alignment at NODE_3966_length_2730_cov_13.267905:2..2506-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2505bp|location=Sequence derived from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- (Gracilaria caudata M_176_S67 male)
ATGAAGATGAGTGGAGGATTGTTCTTGGTAGTGTGGGGTTGTTGTACAGC ATTGGCGATATCGGCGCAAGTGTTATCTACGGATGGATTGAAGGAAGCGA AGGTGAATGGTGTGAGCATGTTCATGAAGTCCGGACCGCATCGCTCGCTG TTTGGGAAGGCGGCCATTACTCCTGCTCCATCGACTGCGTTTAAGGGTAG TGTTCATCCTCGGATACTGTTTGACGGGAGCGGATGGGAGGAGATGTTAG AACGTTATTCGAACGAGGATACTTTTGACATGAAGACATCATGGTCTCAC TTTTCTCGGCGGACGTCATTGCATCTGGCGGAATCGAATCCGATTCTAAA GCGGCTGATCGAAATGGAACGTAATGGGGAAACGGCAGTGTACAGTGGGA AGGAGGATTTGTCGTCTGCGTCGCGGGAGCAGTTGGATGAGCTCGAACAG CTGGCGAGTCACGTGATGAACATGTCGGAAGGGTACTCACAGAGCTTCTT TATATGCGCGTTGTGGAGCAGTGTGAACGAGAAGGTGATGAAGGAACGGG GTCGGGAGGAGTCGTTCATGAAGACGAGTGTGGAAGACTGCGTGAAGGCA TCTGTGGCATGGGCGAAGGTGCTGCTTGCGCATCGGGCGGTGAACTGCGC GGGAAAGTGTACGAGTGGAGCAAGTGGGAGTCGTGCGTTCCTGTGGGACG AGGAGCGTTGGTTCCAGGTTCAGAATGACTGGTACTCTGCCGGAGCTAGT CTGGCGCTCACTTTGGACGTGCTGTACGACCGATTCGCAGATGAGGAACG ACGAGTGGTGGTGAGCGCATTGGCGATGCTGATGTACAAGCAGACTTCGT GGGGAACGGCAGTGGAAAGCTCACGCAACTCACCGAACGCAGCGCAACAC CCGCACCGGATATTCAGCAACTGGGCGTTGTACCATGGACATCTGTACAT TACTAACTTGGTGTTGGAGGGAGAGCACGACTTCGATGCGTACGCGTCTG CTGTGTTGTCTTCGAGCGGAGTGGACGGGTTCAACGCGGGTCTGGATAAG CGGTTCACGGCGTTGATCAGGGCGTACATGACGCATGCTGTGTATCCGGA CGGAGCGACGTTTGAGGACGCGTACACGTACTTCATTGCTCTACGGGAGG GGTCGCTGGCGCTGGTTGCGGCTGAACGGCGGGGACTGGGGATGATTGAC ACGGAGCGATTCCGAGGTCTGATCCACAACGCAGCCCAGATGATGGAGCC GTGGCAATGTGCGCGGATCGTGGGTCACTCGTCTGGAGGAGGACTGTCGT ATCCGGCTTGGGCTGCGCTTTTCAAGTACGCGTACCCCGAGGGCGCTCTG CCGCAAATGGTTTGGAAGCAGAGGATGGGGAAGCATTTCAAGAACAACAA CCCGTGTCGGATCCAGTGGGTGCAGAACCTGATGCACGTTCTTGTGATGG GAATGGAGCACGGAAGTTCGACGTACGCGGAGTCGCCGCAGGGTCTCGAA GAGGAGTTCAAGAAGCACTTTGCGCTGTCGTACTTGAGCCCTCGTCGGGG GCTGCTTATTGCGAGGAGCAGTGAGGCGGAGGACGCGCTGTACGTGCACT TTGATGCGCGCCCCGACGCGATGTTCCCCGGGCACGACAACGCTGATCGC GGAGTGTTTACGCTGACGGCGTTCAAGACTGCGTGGATCGACGACTATGC GTGGAGGTACAACATCGACTCGAGAAAGCATTCGCTGCTGCATGTGGACG GTTTGGCGCAGGACGCCAAGGCACCATCGGTACACATGGTTCGAACGGAG GACAGTGGCACGCAGGTGATTGCAGTAGCGAACCTGACTTATGCTTATAA CGTGGAATGGGCGAGGAACTGGCCGTATGACAAGGCGCCCATGGCGAGGG TGACGGTGTACGACGATGAGGGGAGAGAGAGGCAGGTGGGAAAAATGTTT GATGTGGCGGAATACGGACACCCGCACGACTTTGGATGGCCTGCTGATGA CGATGGGGAGGACCTGGGATTCACTCGGGAGGGGTTCAACATGCACGGGG ATGCGGATGTAGGGTTCCGAGGTATGTGGACGTGGAAACGGGCGTACCGA GAGACACCGCTGGCGTGGATGGTACGGTCTGTGATTCTGAACCGGGCAGG AGGCGGGCCGGGGTTTTTCATGGTTGTGGACTCTGCGAGAGTGTCTGGGG CGGCAGTGAAGAACAAATTCGAATCGTACCTTGCACTTGGAGACAAGGTG AAGGTGGAGAGCGAATCGTCGAGTTGCGAAGGGAATCGGTGCAGGATCGT GTTAGTGGACGATGGGATTGCACAGGTGGATGTGCATGTTGTGACGATTG GGAAATCGGCATCGTATCGGACGGAGACTTTCAAGAGCGACGCGGAACAC ACAATGCTTATTGTACGAAGCGACAACGAGAAGGAGGAAGTGTTTTGGAT GGCATTCCATGCTCACCTGGGAGAACCAGAGCGCTTTTCGATGGAACCGA TTTCG
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Coding sequence (CDS) from alignment at NODE_3966_length_2730_cov_13.267905:2..2506-

>Gcaud1745.t1 ID=Gcaud1745.t1|Name=Gcaud1745.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2505bp|location=Sequence derived from alignment at NODE_3966_length_2730_cov_13.267905:2..2506- (Gracilaria caudata M_176_S67 male)
ATGAAGATGAGTGGAGGATTGTTCTTGGTAGTGTGGGGTTGTTGTACAGC
ATTGGCGATATCGGCGCAAGTGTTATCTACGGATGGATTGAAGGAAGCGA
AGGTGAATGGTGTGAGCATGTTCATGAAGTCCGGACCGCATCGCTCGCTG
TTTGGGAAGGCGGCCATTACTCCTGCTCCATCGACTGCGTTTAAGGGTAG
TGTTCATCCTCGGATACTGTTTGACGGGAGCGGATGGGAGGAGATGTTAG
AACGTTATTCGAACGAGGATACTTTTGACATGAAGACATCATGGTCTCAC
TTTTCTCGGCGGACGTCATTGCATCTGGCGGAATCGAATCCGATTCTAAA
GCGGCTGATCGAAATGGAACGTAATGGGGAAACGGCAGTGTACAGTGGGA
AGGAGGATTTGTCGTCTGCGTCGCGGGAGCAGTTGGATGAGCTCGAACAG
CTGGCGAGTCACGTGATGAACATGTCGGAAGGGTACTCACAGAGCTTCTT
TATATGCGCGTTGTGGAGCAGTGTGAACGAGAAGGTGATGAAGGAACGGG
GTCGGGAGGAGTCGTTCATGAAGACGAGTGTGGAAGACTGCGTGAAGGCA
TCTGTGGCATGGGCGAAGGTGCTGCTTGCGCATCGGGCGGTGAACTGCGC
GGGAAAGTGTACGAGTGGAGCAAGTGGGAGTCGTGCGTTCCTGTGGGACG
AGGAGCGTTGGTTCCAGGTTCAGAATGACTGGTACTCTGCCGGAGCTAGT
CTGGCGCTCACTTTGGACGTGCTGTACGACCGATTCGCAGATGAGGAACG
ACGAGTGGTGGTGAGCGCATTGGCGATGCTGATGTACAAGCAGACTTCGT
GGGGAACGGCAGTGGAAAGCTCACGCAACTCACCGAACGCAGCGCAACAC
CCGCACCGGATATTCAGCAACTGGGCGTTGTACCATGGACATCTGTACAT
TACTAACTTGGTGTTGGAGGGAGAGCACGACTTCGATGCGTACGCGTCTG
CTGTGTTGTCTTCGAGCGGAGTGGACGGGTTCAACGCGGGTCTGGATAAG
CGGTTCACGGCGTTGATCAGGGCGTACATGACGCATGCTGTGTATCCGGA
CGGAGCGACGTTTGAGGACGCGTACACGTACTTCATTGCTCTACGGGAGG
GGTCGCTGGCGCTGGTTGCGGCTGAACGGCGGGGACTGGGGATGATTGAC
ACGGAGCGATTCCGAGGTCTGATCCACAACGCAGCCCAGATGATGGAGCC
GTGGCAATGTGCGCGGATCGTGGGTCACTCGTCTGGAGGAGGACTGTCGT
ATCCGGCTTGGGCTGCGCTTTTCAAGTACGCGTACCCCGAGGGCGCTCTG
CCGCAAATGGTTTGGAAGCAGAGGATGGGGAAGCATTTCAAGAACAACAA
CCCGTGTCGGATCCAGTGGGTGCAGAACCTGATGCACGTTCTTGTGATGG
GAATGGAGCACGGAAGTTCGACGTACGCGGAGTCGCCGCAGGGTCTCGAA
GAGGAGTTCAAGAAGCACTTTGCGCTGTCGTACTTGAGCCCTCGTCGGGG
GCTGCTTATTGCGAGGAGCAGTGAGGCGGAGGACGCGCTGTACGTGCACT
TTGATGCGCGCCCCGACGCGATGTTCCCCGGGCACGACAACGCTGATCGC
GGAGTGTTTACGCTGACGGCGTTCAAGACTGCGTGGATCGACGACTATGC
GTGGAGGTACAACATCGACTCGAGAAAGCATTCGCTGCTGCATGTGGACG
GTTTGGCGCAGGACGCCAAGGCACCATCGGTACACATGGTTCGAACGGAG
GACAGTGGCACGCAGGTGATTGCAGTAGCGAACCTGACTTATGCTTATAA
CGTGGAATGGGCGAGGAACTGGCCGTATGACAAGGCGCCCATGGCGAGGG
TGACGGTGTACGACGATGAGGGGAGAGAGAGGCAGGTGGGAAAAATGTTT
GATGTGGCGGAATACGGACACCCGCACGACTTTGGATGGCCTGCTGATGA
CGATGGGGAGGACCTGGGATTCACTCGGGAGGGGTTCAACATGCACGGGG
ATGCGGATGTAGGGTTCCGAGGTATGTGGACGTGGAAACGGGCGTACCGA
GAGACACCGCTGGCGTGGATGGTACGGTCTGTGATTCTGAACCGGGCAGG
AGGCGGGCCGGGGTTTTTCATGGTTGTGGACTCTGCGAGAGTGTCTGGGG
CGGCAGTGAAGAACAAATTCGAATCGTACCTTGCACTTGGAGACAAGGTG
AAGGTGGAGAGCGAATCGTCGAGTTGCGAAGGGAATCGGTGCAGGATCGT
GTTAGTGGACGATGGGATTGCACAGGTGGATGTGCATGTTGTGACGATTG
GGAAATCGGCATCGTATCGGACGGAGACTTTCAAGAGCGACGCGGAACAC
ACAATGCTTATTGTACGAAGCGACAACGAGAAGGAGGAAGTGTTTTGGAT
GGCATTCCATGCTCACCTGGGAGAACCAGAGCGCTTTTCGATGGAACCGA
TTTCG
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