Gcaud204.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud204.t1
Unique Name	Gcaud204.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	500

Homology

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BLAST of Gcaud204.t1 vs. uniprot
Match: A0A2V3II21_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II21_9FLOR)

HSP 1 Score: 390 bits (1002), Expect = 1.780e-128
Identity = 226/444 (50.90%), Postives = 293/444 (65.99%), Query Frame = 0

Query:   47 GKTIHVRTINYPLWNEGLFNRDLSHALLFLIRILCISIPVYLETRFISHSAPIPVSRLIRTAYVHKPQYEDL--ILSEAMKKFALNKSDFRILALPFEVFARCAEEDEERWMNAKVANVVKANNFTE-IRCVRGSEKAQYRFMERIPPFVEQSVLVPWIDMENSAYANLVYRTNLTLKIQMKEGPYQKLRMESGLKQKVLDKFYKDTPALLLKDVTVQDTGDMECFSWRGPLLEVLI---RDKIRAH---SFVCQNVTGLVVDFYFTSIEGLTNESNTRILAREKDVVSKLVVVSTSFHFLGSLEFKDSVSINAGHVVRQFAYLPPATSFYLKYALRGLCYTPASNVTVTVPGREEAFSVELDNVVIVVLALEVGLVLVLGLSLEVFARYRWNDMQRANTVEGLSYIWAKYIAR--WGGLVEKQSRITLRLCRRMFDGEERFVY 479
            GK+I VR+I YPLWNEGLF+R  SH LLFLIRI CI IPVYLETRFISHS PIPV +LIR AYV +P Y D+  + SE        +    ++ LP EVF RCA  D++ W+ AK+ANV       + I CV+G+E+A YR +E+ P FVE SV+V     + S     VY+ NLTL++   EGP+++      ++    ++ Y     L +K+VTV DT D +CF WR P+ E       D+I  +   SFVCQNVTG  VDFYFTS++ L NESNTRIL +  ++VSK  +VST+F F+GSLE+K+ + INAGH+ R     PP T F     +R + Y+ ASNVTV VPG E+  SVELD VVIVV A+EV +VLVLGL+L V +RY+W+DMQRANTVEGLS+IWA   +R  W    +K   I+LRL R + DG+ERF+Y
Sbjct:    2 GKSIRVRSIPYPLWNEGLFHRQPSHLLLFLIRIACIVIPVYLETRFISHSNPIPVKKLIRNAYVSQPNYHDVHPLWSE-------QRDPRNVVLLPEEVFHRCAARDDDGWVIAKIANVTLVGKDRDLIHCVKGTEQAVYRTVEKTPHFVESSVVVN----DQSKEKTFVYQPNLTLEVWRDEGPFKRFSPWPSVEDDDPNRQY-----LQVKNVTVLDTKDFQCFFWRAPVAEGHAFDREDRIYEYVLDSFVCQNVTGNFVDFYFTSVQDLANESNTRILEQGGNLVSKQSIVSTTFEFIGSLEYKNEIIINAGHLSRHQFRFPPTTRFQFLLMIRAILYSRASNVTVEVPGDEKTRSVELDVVVIVVGAMEVIVVLVLGLTLAVISRYKWDDMQRANTVEGLSHIWAMTQSRTWWDLSSKKNGPISLRLKRYICDGKERFMY 429

The following BLAST results are available for this feature:

BLAST of Gcaud204.t1 vs. uniprot

BLAST of Gcaud204.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3II21_9FLOR	1.780e-128	50.90	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 69..88
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 89..401
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..41
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 425..499
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 402..424
None	No IPR available	TMHMM	TMhelix		coord: 402..424
None	No IPR available	TMHMM	TMhelix		coord: 7..29

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3964_length_2733_cov_4.457608	contig	NODE_3964_length_2733_cov_4.457608:597..2096 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud204.t1	Gcaud204.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_3964_length_2733_cov_4.457608 597..2096 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud204.t1 ID=Gcaud204.t1|Name=Gcaud204.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=500bp
MAITIPFGAGVVAALIFLLFEFLVLPVMLHATSTLASFFLVRRAAKGKTI
HVRTINYPLWNEGLFNRDLSHALLFLIRILCISIPVYLETRFISHSAPIP
VSRLIRTAYVHKPQYEDLILSEAMKKFALNKSDFRILALPFEVFARCAEE
DEERWMNAKVANVVKANNFTEIRCVRGSEKAQYRFMERIPPFVEQSVLVP
WIDMENSAYANLVYRTNLTLKIQMKEGPYQKLRMESGLKQKVLDKFYKDT
PALLLKDVTVQDTGDMECFSWRGPLLEVLIRDKIRAHSFVCQNVTGLVVD
FYFTSIEGLTNESNTRILAREKDVVSKLVVVSTSFHFLGSLEFKDSVSIN
AGHVVRQFAYLPPATSFYLKYALRGLCYTPASNVTVTVPGREEAFSVELD
NVVIVVLALEVGLVLVLGLSLEVFARYRWNDMQRANTVEGLSYIWAKYIA
RWGGLVEKQSRITLRLCRRMFDGEERFVYHPELMGVEVLQGKDEEECSS*