Gcaud8280.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8280.t1
Unique NameGcaud8280.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length290
Homology
BLAST of Gcaud8280.t1 vs. uniprot
Match: A0A2V3J6I6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6I6_9FLOR)

HSP 1 Score: 303 bits (776), Expect = 1.360e-98
Identity = 153/286 (53.50%), Postives = 206/286 (72.03%), Query Frame = 0
Query:    4 TLFPSRFLADG-KPDLKRVRKATLEDVHFFFGSKGNQTKIMFVCEPPPSLDGLFKAARKFPDLPTSIELRKVMPFKSPVGEEQFFPLIFKALFRPSAELRRIMTVTINNQNRYAPLRLWRRGPL--IDTSRPFISVHARLGFGVGEHNSRFENQMKGHTMESVAQCLARKAMELASQENIINPPRFYVACDTSEFRVNLKRALLRVHGRSEVMYGMWDIKHVRDMVERTKDDLRLLMYTFAELFLLSESRAILRGNSGFSNLALWMGAVPGQMYYDIHADCEQVSK 286
            +LFPSR   +G + D   V+KATL ++H F G       ++  CEP PSLD +FKA RKFP L TSI ++K++P +      QFFPLIFKAL RPSA LR++M   I+  NR+AP RLW++GPL  IDT +PFISVHARLG+GV E+  RF++QM G TMESVA+C+A+ AM LA +EN+ +PPRFY+A DT +FR+  K AL+R+  +++VMYG W +KHV++M   T DDLRL  YTF +L+++S+  AILR NSGF NLA+WMG +P QM ++I+ DC  V +
Sbjct:   99 SLFPSRTKEEGGEEDKVYVKKATLMEMHLFTGI---HRMLVLECEPRPSLDDVFKAMRKFPRLQTSIAMKKILPLRRRPHPNQFFPLIFKALLRPSAALRKMMAEIIDKHNRFAPSRLWKQGPLKRIDTGKPFISVHARLGYGVAEYIKRFKSQMSGRTMESVAECMAQIAMRLAKRENVTHPPRFYLATDTEQFRLMFKTALMRMDRQAKVMYGTWVMKHVKEMQGHTTDDLRLFRYTFMDLYIMSKGEAILRSNSGFPNLAVWMGGIPSQMGFNIN-DCPLVLQ 380          
BLAST of Gcaud8280.t1 vs. uniprot
Match: A0A2V3J6A2_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6A2_9FLOR)

HSP 1 Score: 120 bits (301), Expect = 1.960e-27
Identity = 75/220 (34.09%), Postives = 120/220 (54.55%), Query Frame = 0
Query:   63 PDLPTSIELRKVMPFKSPVG--EEQFFPLIFKALFRPSAELRRIMTVTINNQNRYAPLR---------LWRRGPLIDTSRPFISVHARLGFGVGEHNSRFENQMKGHTMESVAQCLARKAMELASQENIINPPRFYVACDTSEFRVNLKRALLRVHGRSEVMYGMWDIKHVRDMVERTKDDLRL--LMYTFAELFLLSESRAILRGNSGFSNLALWMGAV 269
            P L   +E+ K +P  S      E+  P I KALF PS ELR ++    N  N   PL          LWR     +    +ISVHAR+G+G  E  +RF  + +G T ES+A C+A+ A+ +A Q  +++P  F+++ DT  FR   K  + R+   ++V    W   H+ + V R++   ++   M T+ +++LLS+ +++L   SGFS++ALWMGA+
Sbjct:  213 PRLYPQLEISKKLPQSSGFSPTREEVIPFILKALFCPSPELRSLLPGQENTDNLVWPLSTLFSPDQNLLWR-----NEMPAYISVHARVGYGFNETEARFNLKNQGLTPESLATCMAQMAVRMADQRRMLHPHHFFISSDTDHFRTLFKTEVNRLRPSAKVYQSNWQAVHM-NRVGRSQSPSKVSDFMNTYVDVYLLSKGKSMLFIRSGFSHVALWMGAI 426          
The following BLAST results are available for this feature:
BLAST of Gcaud8280.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6I6_9FLOR1.360e-9853.50Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J6A2_9FLOR1.960e-2734.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.11350coord: 127..281
e-value: 2.8E-8
score: 35.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_387_length_27166_cov_4.437230contigNODE_387_length_27166_cov_4.437230:3766..4886 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8280.t1Gcaud8280.t1Gracilaria caudata M_176_S67 malemRNANODE_387_length_27166_cov_4.437230 3766..4886 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8280.t1 ID=Gcaud8280.t1|Name=Gcaud8280.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
LSITLFPSRFLADGKPDLKRVRKATLEDVHFFFGSKGNQTKIMFVCEPPP
SLDGLFKAARKFPDLPTSIELRKVMPFKSPVGEEQFFPLIFKALFRPSAE
LRRIMTVTINNQNRYAPLRLWRRGPLIDTSRPFISVHARLGFGVGEHNSR
FENQMKGHTMESVAQCLARKAMELASQENIINPPRFYVACDTSEFRVNLK
RALLRVHGRSEVMYGMWDIKHVRDMVERTKDDLRLLMYTFAELFLLSESR
AILRGNSGFSNLALWMGAVPGQMYYDIHADCEQVSKIPG*
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