Gcaud8280.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8280.t1
Unique Name	Gcaud8280.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_387_length_27166_cov_4.437230	contig	NODE_387_length_27166_cov_4.437230:3766..4886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8280	Gcaud8280	Gracilaria caudata M_176_S67 male	gene	NODE_387_length_27166_cov_4.437230 3766..4886 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8280.t1	Gcaud8280.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_387_length_27166_cov_4.437230 3766..4886 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8280.t1.start1	Gcaud8280.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_387_length_27166_cov_4.437230 3766..3768 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8280.t1.CDS1	Gcaud8280.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_387_length_27166_cov_4.437230 3766..3775 +
Gcaud8280.t1.CDS2	Gcaud8280.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_387_length_27166_cov_4.437230 4027..4886 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8280.t1.exon1	Gcaud8280.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_387_length_27166_cov_4.437230 3766..3775 +
Gcaud8280.t1.exon2	Gcaud8280.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_387_length_27166_cov_4.437230 4027..4886 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8280.t1.intron1	Gcaud8280.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_387_length_27166_cov_4.437230 3776..4026 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8280.t1.stop1	Gcaud8280.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_387_length_27166_cov_4.437230 4884..4886 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+
coding sequence from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+

mRNA sequence

>Gcaud8280.t1 ID=Gcaud8280.t1|Name=Gcaud8280.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
LSITLFPSRFLADGKPDLKRVRKATLEDVHFFFGSKGNQTKIMFVCEPPP
SLDGLFKAARKFPDLPTSIELRKVMPFKSPVGEEQFFPLIFKALFRPSAE
LRRIMTVTINNQNRYAPLRLWRRGPLIDTSRPFISVHARLGFGVGEHNSR
FENQMKGHTMESVAQCLARKAMELASQENIINPPRFYVACDTSEFRVNLK
RALLRVHGRSEVMYGMWDIKHVRDMVERTKDDLRLLMYTFAELFLLSESR
AILRGNSGFSNLALWMGAVPGQMYYDIHADCEQVSKIPG*

spliced messenger RNA

>Gcaud8280.t1 ID=Gcaud8280.t1|Name=Gcaud8280.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCGATAACTTTGTTTCCTTCTCGATTTCTTGCTGATGGTAAGCCTGA
CTTGAAGAGAGTTCGAAAGGCCACTCTGGAGGACGTGCACTTCTTCTTCG
GAAGCAAAGGCAATCAGACTAAGATTATGTTCGTGTGTGAACCACCGCCA
AGCTTAGACGGTTTGTTCAAGGCGGCGAGGAAATTTCCGGACCTTCCGAC
CTCAATTGAGTTACGGAAGGTAATGCCCTTCAAGTCTCCTGTGGGAGAGG
AGCAGTTTTTCCCGTTAATATTTAAAGCGCTGTTTAGGCCATCGGCAGAG
CTCCGTAGAATTATGACCGTGACAATCAACAATCAAAATCGTTACGCTCC
ATTGCGCCTTTGGAGGAGAGGACCACTAATTGACACCAGCAGACCCTTTA
TTTCTGTTCATGCGAGATTAGGGTTTGGGGTAGGTGAACACAACTCCAGA
TTTGAAAACCAAATGAAAGGCCACACGATGGAGTCTGTCGCGCAATGTTT
GGCTCGCAAAGCCATGGAACTTGCTTCACAAGAAAACATAATCAATCCTC
CTCGATTCTACGTGGCGTGCGACACATCTGAATTCCGAGTGAACCTCAAA
CGAGCCTTACTTCGAGTACATGGCCGCAGCGAGGTAATGTATGGAATGTG
GGATATAAAACATGTAAGGGATATGGTAGAACGGACAAAGGATGACTTGC
GTTTGTTAATGTATACATTTGCAGAACTCTTTTTGTTGTCGGAGAGTCGG
GCTATATTGCGAGGTAACTCTGGATTTTCGAACCTAGCATTATGGATGGG
GGCCGTCCCTGGACAAATGTACTATGATATTCATGCGGACTGTGAGCAGG
TTTCAAAGATACCAGGGTGA

protein sequence of Gcaud8280.t1

>Gcaud8280.t1 ID=Gcaud8280.t1|Name=Gcaud8280.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
LSITLFPSRFLADGKPDLKRVRKATLEDVHFFFGSKGNQTKIMFVCEPPP
SLDGLFKAARKFPDLPTSIELRKVMPFKSPVGEEQFFPLIFKALFRPSAE
LRRIMTVTINNQNRYAPLRLWRRGPLIDTSRPFISVHARLGFGVGEHNSR
FENQMKGHTMESVAQCLARKAMELASQENIINPPRFYVACDTSEFRVNLK
RALLRVHGRSEVMYGMWDIKHVRDMVERTKDDLRLLMYTFAELFLLSESR
AILRGNSGFSNLALWMGAVPGQMYYDIHADCEQVSKIPG*

mRNA from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8280.t1 ID=Gcaud8280.t1|Name=Gcaud8280.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1121bp|location=Sequence derived from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+ (Gracilaria caudata M_176_S67 male)
TTGTCGATAAGTACGTAACCTGGCATAAATCTGTTGTATCTAAAGTTCTT
AGTGGTGAGCTCGATGGCTCCACAGTTAGAACGCTGGTGTTTGTTGGACA
TAATGCAGGCCACGGTCTCGGGGACAGACTGCGTGGACTACTTTTGGCAT
ACCTGTCTGCAGTGATGTCAAACCGTTTGCTGCTGATACACTGGCAAGAT
CCATTCCCCTTGAGCAGGATATTCGTCAACAGTGTGAGATCTAACTTCAC
TTACGATGAAGCTTTGTTTCCTTCTCGATTTCTTGCTGATGGTAAGCCTG
ACTTGAAGAGAGTTCGAAAGGCCACTCTGGAGGACGTGCACTTCTTCTTC
GGAAGCAAAGGCAATCAGACTAAGATTATGTTCGTGTGTGAACCACCGCC
AAGCTTAGACGGTTTGTTCAAGGCGGCGAGGAAATTTCCGGACCTTCCGA
CCTCAATTGAGTTACGGAAGGTAATGCCCTTCAAGTCTCCTGTGGGAGAG
GAGCAGTTTTTCCCGTTAATATTTAAAGCGCTGTTTAGGCCATCGGCAGA
GCTCCGTAGAATTATGACCGTGACAATCAACAATCAAAATCGTTACGCTC
CATTGCGCCTTTGGAGGAGAGGACCACTAATTGACACCAGCAGACCCTTT
ATTTCTGTTCATGCGAGATTAGGGTTTGGGGTAGGTGAACACAACTCCAG
ATTTGAAAACCAAATGAAAGGCCACACGATGGAGTCTGTCGCGCAATGTT
TGGCTCGCAAAGCCATGGAACTTGCTTCACAAGAAAACATAATCAATCCT
CCTCGATTCTACGTGGCGTGCGACACATCTGAATTCCGAGTGAACCTCAA
ACGAGCCTTACTTCGAGTACATGGCCGCAGCGAGGTAATGTATGGAATGT
GGGATATAAAACATGTAAGGGATATGGTAGAACGGACAAAGGATGACTTG
CGTTTGTTAATGTATACATTTGCAGAACTCTTTTTGTTGTCGGAGAGTCG
GGCTATATTGCGAGGTAACTCTGGATTTTCGAACCTAGCATTATGGATGG
GGGCCGTCCCTGGACAAATGTACTATGATATTCATGCGGACTGTGAGCAG
GTTTCAAAGATACCAGGGTGA

Coding sequence (CDS) from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+

>Gcaud8280.t1 ID=Gcaud8280.t1|Name=Gcaud8280.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=870bp|location=Sequence derived from alignment at NODE_387_length_27166_cov_4.437230:3766..4886+ (Gracilaria caudata M_176_S67 male)
TTGTCGATAACTTTGTTTCCTTCTCGATTTCTTGCTGATGGTAAGCCTGA
CTTGAAGAGAGTTCGAAAGGCCACTCTGGAGGACGTGCACTTCTTCTTCG
GAAGCAAAGGCAATCAGACTAAGATTATGTTCGTGTGTGAACCACCGCCA
AGCTTAGACGGTTTGTTCAAGGCGGCGAGGAAATTTCCGGACCTTCCGAC
CTCAATTGAGTTACGGAAGGTAATGCCCTTCAAGTCTCCTGTGGGAGAGG
AGCAGTTTTTCCCGTTAATATTTAAAGCGCTGTTTAGGCCATCGGCAGAG
CTCCGTAGAATTATGACCGTGACAATCAACAATCAAAATCGTTACGCTCC
ATTGCGCCTTTGGAGGAGAGGACCACTAATTGACACCAGCAGACCCTTTA
TTTCTGTTCATGCGAGATTAGGGTTTGGGGTAGGTGAACACAACTCCAGA
TTTGAAAACCAAATGAAAGGCCACACGATGGAGTCTGTCGCGCAATGTTT
GGCTCGCAAAGCCATGGAACTTGCTTCACAAGAAAACATAATCAATCCTC
CTCGATTCTACGTGGCGTGCGACACATCTGAATTCCGAGTGAACCTCAAA
CGAGCCTTACTTCGAGTACATGGCCGCAGCGAGGTAATGTATGGAATGTG
GGATATAAAACATGTAAGGGATATGGTAGAACGGACAAAGGATGACTTGC
GTTTGTTAATGTATACATTTGCAGAACTCTTTTTGTTGTCGGAGAGTCGG
GCTATATTGCGAGGTAACTCTGGATTTTCGAACCTAGCATTATGGATGGG
GGCCGTCCCTGGACAAATGTACTATGATATTCATGCGGACTGTGAGCAGG
TTTCAAAGATACCAGGGTGA