Gcaud2065.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2065.t1
Unique Name	Gcaud2065.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_379_length_27795_cov_4.752057	contig	NODE_379_length_27795_cov_4.752057:11435..12967 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	84531.JMTZ01000025_gene4073
Preferred name	catB
PFAMs	Catalase,Catalase-rel
Max annot lvl	135614\|Xanthomonadales
KEGG rclass	RC00034,RC00767,RC02141,RC02755
KEGG ko	ko:K03781
KEGG Reaction	R00009,R00602,R02670
KEGG Pathway	ko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG Module	M00532
Evalue	1.16e-178
EggNOG OGs	COG0753@1\|root,COG0753@2\|Bacteria,1MUXZ@1224\|Proteobacteria,1RNE7@1236\|Gammaproteobacteria,1X490@135614\|Xanthomonadales
EC	1.11.1.6
Description	Serves to protect cells from the toxic effects of hydrogen peroxide
COG category	P
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2065	Gcaud2065	Gracilaria caudata M_176_S67 male	gene	NODE_379_length_27795_cov_4.752057 11435..12967 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2065.t1.stop1	Gcaud2065.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_379_length_27795_cov_4.752057 11435..11437 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2065.t1.CDS1	Gcaud2065.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_379_length_27795_cov_4.752057 11435..12967 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2065.t1.exon1	Gcaud2065.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_379_length_27795_cov_4.752057 11435..12967 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2065.t1.start1	Gcaud2065.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_379_length_27795_cov_4.752057 12965..12967 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2065.t1	Gcaud2065.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_379_length_27795_cov_4.752057 11435..12967 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_379_length_27795_cov_4.752057:11435..12967-
coding sequence from alignment at NODE_379_length_27795_cov_4.752057:11435..12967-

mRNA sequence

>Gcaud2065.t1 ID=Gcaud2065.t1|Name=Gcaud2065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=511bp
MRFPQFLLVAILLQIGSAHQILTGETGRYAGSNQHSQTASAHGPLLLQDI
YMLEKLRRFNHERIPERVVHGRGAGAHGYFQPYRSLAHLTSAKLFNPNVK
TEVFVRFSTVIHGKHSPETVRDPRGFAIKFKTEEGNWDLVGNNLPVFFIR
DTIKFPDMVHSLKPDPVTNLQDPNRFFDFFSALGGMATNMLTFVYSDLGI
PASYRFMDGNSVHAFKFVNKKREVTYVKFRWFSNQGVRNLTRKQAARIQS
ENFSHATKDLYDAIERKDFPSWELAIQTMKPEQLDDFEFDPLDATKEWPV
HQFPFTPIGRIVLDRIPANFHIFSEQSAFDPGNFLPAAIEPSEDRLLQGR
LVSYHESQTHRLGSNSFHLLPVNKPMSEVHTYNQDGVMTYEHAWNGSINY
EPNNSPHSYHEDSAYKYSSMEVCGSYQQTGIKKTLNFKQAGETYRSFSRK
DRKNLVDNLAADLVQVRAENVRNMMCAHFYKADEEYGRRIAAKVNCDMDA
VKKIAFDLES*

spliced messenger RNA

>Gcaud2065.t1 ID=Gcaud2065.t1|Name=Gcaud2065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_379_length_27795_cov_4.752057:11435..12967- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTTCCCGCAATTCTTATTGGTTGCCATCCTACTTCAAATCGGTTC
CGCGCATCAGATTCTTACGGGGGAGACAGGAAGATACGCAGGCTCCAACC
AGCACTCGCAGACAGCATCTGCTCACGGTCCACTTCTTCTTCAAGATATC
TACATGCTGGAAAAGCTTCGCCGATTCAATCACGAACGTATCCCAGAACG
CGTCGTACATGGAAGAGGAGCAGGTGCCCACGGCTACTTTCAACCATACC
GTTCTCTGGCTCATCTTACAAGCGCGAAGCTTTTCAACCCCAATGTCAAG
ACAGAAGTGTTTGTTCGCTTTTCAACTGTGATTCATGGGAAACACTCTCC
AGAGACCGTCAGGGATCCAAGAGGATTTGCAATCAAGTTCAAGACCGAGG
AGGGAAATTGGGATCTAGTGGGAAACAACTTGCCGGTGTTCTTCATCCGA
GATACCATTAAGTTCCCGGACATGGTGCACAGCCTGAAGCCCGACCCGGT
CACCAACTTGCAAGACCCGAACCGCTTCTTCGATTTCTTCTCCGCGTTGG
GCGGAATGGCCACCAACATGCTGACTTTTGTTTATTCGGATCTTGGGATT
CCGGCTTCGTATCGGTTTATGGATGGAAACTCTGTGCATGCTTTCAAGTT
TGTCAACAAGAAGCGAGAAGTCACATATGTGAAGTTTAGGTGGTTCTCCA
ATCAAGGTGTTCGAAACCTCACGCGAAAGCAGGCGGCACGCATCCAGTCT
GAGAATTTCAGTCATGCTACAAAGGATCTGTACGACGCTATTGAACGTAA
GGATTTCCCGTCGTGGGAACTGGCGATTCAGACCATGAAGCCGGAGCAGC
TCGACGACTTTGAATTCGATCCTCTCGATGCGACGAAGGAATGGCCCGTA
CATCAATTCCCTTTCACACCAATCGGCAGGATTGTGCTTGATCGAATCCC
GGCAAACTTCCATATCTTCTCTGAGCAGTCTGCTTTTGACCCAGGAAACT
TCCTTCCGGCCGCGATAGAGCCCTCCGAGGACCGTTTATTGCAAGGACGT
CTGGTGTCGTACCACGAGTCTCAGACACACCGGCTTGGATCCAACTCGTT
CCATCTACTTCCTGTTAACAAGCCCATGTCAGAGGTACACACGTACAATC
AGGACGGAGTAATGACGTATGAGCATGCTTGGAATGGTTCCATCAACTAC
GAACCGAACAACTCGCCGCATTCTTATCACGAGGACTCGGCTTACAAGTA
CTCAAGCATGGAGGTTTGTGGCAGTTACCAACAAACAGGAATTAAGAAGA
CTCTTAACTTCAAGCAGGCAGGTGAGACATATCGCAGCTTTTCCAGAAAG
GATAGAAAGAATCTGGTGGATAACCTTGCTGCAGATCTGGTTCAAGTCAG
GGCAGAAAATGTAAGGAATATGATGTGTGCGCACTTCTACAAGGCCGATG
AAGAATATGGCCGTCGCATTGCGGCCAAGGTAAACTGTGATATGGACGCG
GTGAAGAAGATTGCTTTCGATCTTGAATCTTAG

protein sequence of Gcaud2065.t1

>Gcaud2065.t1 ID=Gcaud2065.t1|Name=Gcaud2065.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=511bp
MRFPQFLLVAILLQIGSAHQILTGETGRYAGSNQHSQTASAHGPLLLQDI
YMLEKLRRFNHERIPERVVHGRGAGAHGYFQPYRSLAHLTSAKLFNPNVK
TEVFVRFSTVIHGKHSPETVRDPRGFAIKFKTEEGNWDLVGNNLPVFFIR
DTIKFPDMVHSLKPDPVTNLQDPNRFFDFFSALGGMATNMLTFVYSDLGI
PASYRFMDGNSVHAFKFVNKKREVTYVKFRWFSNQGVRNLTRKQAARIQS
ENFSHATKDLYDAIERKDFPSWELAIQTMKPEQLDDFEFDPLDATKEWPV
HQFPFTPIGRIVLDRIPANFHIFSEQSAFDPGNFLPAAIEPSEDRLLQGR
LVSYHESQTHRLGSNSFHLLPVNKPMSEVHTYNQDGVMTYEHAWNGSINY
EPNNSPHSYHEDSAYKYSSMEVCGSYQQTGIKKTLNFKQAGETYRSFSRK
DRKNLVDNLAADLVQVRAENVRNMMCAHFYKADEEYGRRIAAKVNCDMDA
VKKIAFDLES*

mRNA from alignment at NODE_379_length_27795_cov_4.752057:11435..12967-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2065.t1 ID=Gcaud2065.t1|Name=Gcaud2065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at NODE_379_length_27795_cov_4.752057:11435..12967- (Gracilaria caudata M_176_S67 male)
ATGAGGTTCCCGCAATTCTTATTGGTTGCCATCCTACTTCAAATCGGTTC
CGCGCATCAGATTCTTACGGGGGAGACAGGAAGATACGCAGGCTCCAACC
AGCACTCGCAGACAGCATCTGCTCACGGTCCACTTCTTCTTCAAGATATC
TACATGCTGGAAAAGCTTCGCCGATTCAATCACGAACGTATCCCAGAACG
CGTCGTACATGGAAGAGGAGCAGGTGCCCACGGCTACTTTCAACCATACC
GTTCTCTGGCTCATCTTACAAGCGCGAAGCTTTTCAACCCCAATGTCAAG
ACAGAAGTGTTTGTTCGCTTTTCAACTGTGATTCATGGGAAACACTCTCC
AGAGACCGTCAGGGATCCAAGAGGATTTGCAATCAAGTTCAAGACCGAGG
AGGGAAATTGGGATCTAGTGGGAAACAACTTGCCGGTGTTCTTCATCCGA
GATACCATTAAGTTCCCGGACATGGTGCACAGCCTGAAGCCCGACCCGGT
CACCAACTTGCAAGACCCGAACCGCTTCTTCGATTTCTTCTCCGCGTTGG
GCGGAATGGCCACCAACATGCTGACTTTTGTTTATTCGGATCTTGGGATT
CCGGCTTCGTATCGGTTTATGGATGGAAACTCTGTGCATGCTTTCAAGTT
TGTCAACAAGAAGCGAGAAGTCACATATGTGAAGTTTAGGTGGTTCTCCA
ATCAAGGTGTTCGAAACCTCACGCGAAAGCAGGCGGCACGCATCCAGTCT
GAGAATTTCAGTCATGCTACAAAGGATCTGTACGACGCTATTGAACGTAA
GGATTTCCCGTCGTGGGAACTGGCGATTCAGACCATGAAGCCGGAGCAGC
TCGACGACTTTGAATTCGATCCTCTCGATGCGACGAAGGAATGGCCCGTA
CATCAATTCCCTTTCACACCAATCGGCAGGATTGTGCTTGATCGAATCCC
GGCAAACTTCCATATCTTCTCTGAGCAGTCTGCTTTTGACCCAGGAAACT
TCCTTCCGGCCGCGATAGAGCCCTCCGAGGACCGTTTATTGCAAGGACGT
CTGGTGTCGTACCACGAGTCTCAGACACACCGGCTTGGATCCAACTCGTT
CCATCTACTTCCTGTTAACAAGCCCATGTCAGAGGTACACACGTACAATC
AGGACGGAGTAATGACGTATGAGCATGCTTGGAATGGTTCCATCAACTAC
GAACCGAACAACTCGCCGCATTCTTATCACGAGGACTCGGCTTACAAGTA
CTCAAGCATGGAGGTTTGTGGCAGTTACCAACAAACAGGAATTAAGAAGA
CTCTTAACTTCAAGCAGGCAGGTGAGACATATCGCAGCTTTTCCAGAAAG
GATAGAAAGAATCTGGTGGATAACCTTGCTGCAGATCTGGTTCAAGTCAG
GGCAGAAAATGTAAGGAATATGATGTGTGCGCACTTCTACAAGGCCGATG
AAGAATATGGCCGTCGCATTGCGGCCAAGGTAAACTGTGATATGGACGCG
GTGAAGAAGATTGCTTTCGATCTTGAATCTTAG

Coding sequence (CDS) from alignment at NODE_379_length_27795_cov_4.752057:11435..12967-

>Gcaud2065.t1 ID=Gcaud2065.t1|Name=Gcaud2065.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1533bp|location=Sequence derived from alignment at NODE_379_length_27795_cov_4.752057:11435..12967- (Gracilaria caudata M_176_S67 male)
ATGAGGTTCCCGCAATTCTTATTGGTTGCCATCCTACTTCAAATCGGTTC
CGCGCATCAGATTCTTACGGGGGAGACAGGAAGATACGCAGGCTCCAACC
AGCACTCGCAGACAGCATCTGCTCACGGTCCACTTCTTCTTCAAGATATC
TACATGCTGGAAAAGCTTCGCCGATTCAATCACGAACGTATCCCAGAACG
CGTCGTACATGGAAGAGGAGCAGGTGCCCACGGCTACTTTCAACCATACC
GTTCTCTGGCTCATCTTACAAGCGCGAAGCTTTTCAACCCCAATGTCAAG
ACAGAAGTGTTTGTTCGCTTTTCAACTGTGATTCATGGGAAACACTCTCC
AGAGACCGTCAGGGATCCAAGAGGATTTGCAATCAAGTTCAAGACCGAGG
AGGGAAATTGGGATCTAGTGGGAAACAACTTGCCGGTGTTCTTCATCCGA
GATACCATTAAGTTCCCGGACATGGTGCACAGCCTGAAGCCCGACCCGGT
CACCAACTTGCAAGACCCGAACCGCTTCTTCGATTTCTTCTCCGCGTTGG
GCGGAATGGCCACCAACATGCTGACTTTTGTTTATTCGGATCTTGGGATT
CCGGCTTCGTATCGGTTTATGGATGGAAACTCTGTGCATGCTTTCAAGTT
TGTCAACAAGAAGCGAGAAGTCACATATGTGAAGTTTAGGTGGTTCTCCA
ATCAAGGTGTTCGAAACCTCACGCGAAAGCAGGCGGCACGCATCCAGTCT
GAGAATTTCAGTCATGCTACAAAGGATCTGTACGACGCTATTGAACGTAA
GGATTTCCCGTCGTGGGAACTGGCGATTCAGACCATGAAGCCGGAGCAGC
TCGACGACTTTGAATTCGATCCTCTCGATGCGACGAAGGAATGGCCCGTA
CATCAATTCCCTTTCACACCAATCGGCAGGATTGTGCTTGATCGAATCCC
GGCAAACTTCCATATCTTCTCTGAGCAGTCTGCTTTTGACCCAGGAAACT
TCCTTCCGGCCGCGATAGAGCCCTCCGAGGACCGTTTATTGCAAGGACGT
CTGGTGTCGTACCACGAGTCTCAGACACACCGGCTTGGATCCAACTCGTT
CCATCTACTTCCTGTTAACAAGCCCATGTCAGAGGTACACACGTACAATC
AGGACGGAGTAATGACGTATGAGCATGCTTGGAATGGTTCCATCAACTAC
GAACCGAACAACTCGCCGCATTCTTATCACGAGGACTCGGCTTACAAGTA
CTCAAGCATGGAGGTTTGTGGCAGTTACCAACAAACAGGAATTAAGAAGA
CTCTTAACTTCAAGCAGGCAGGTGAGACATATCGCAGCTTTTCCAGAAAG
GATAGAAAGAATCTGGTGGATAACCTTGCTGCAGATCTGGTTCAAGTCAG
GGCAGAAAATGTAAGGAATATGATGTGTGCGCACTTCTACAAGGCCGATG
AAGAATATGGCCGTCGCATTGCGGCCAAGGTAAACTGTGATATGGACGCG
GTGAAGAAGATTGCTTTCGATCTTGAATCTTAG