Gcaud7419.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7419.t1
Unique NameGcaud7419.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10_length_87931_cov_4.732901contigNODE_10_length_87931_cov_4.732901:25051..25639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1C3R9
PFAMsNDUF_B7
Max annot lvl4751|Fungi
KEGG koko:K03963
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00147
Evalue1.87e-24
EggNOG OGsKOG3468@1|root,KOG3468@2759|Eukaryota,3A5T3@33154|Opisthokonta,3P545@4751|Fungi,1GUQM@112252|Fungi incertae sedis
DescriptionMortierella verticillata NRRL 6337 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 7 (75 aa)
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7419Gcaud7419Gracilaria caudata M_176_S67 malegeneNODE_10_length_87931_cov_4.732901 25051..25639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7419.t1Gcaud7419.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_10_length_87931_cov_4.732901 25051..25639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7419.t1.stop1Gcaud7419.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_10_length_87931_cov_4.732901 25051..25053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7419.t1.CDS1Gcaud7419.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_10_length_87931_cov_4.732901 25051..25165 -
Gcaud7419.t1.CDS2Gcaud7419.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_10_length_87931_cov_4.732901 25256..25388 -
Gcaud7419.t1.CDS3Gcaud7419.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_10_length_87931_cov_4.732901 25487..25534 -
Gcaud7419.t1.CDS4Gcaud7419.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_10_length_87931_cov_4.732901 25621..25639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7419.t1.exon1Gcaud7419.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_10_length_87931_cov_4.732901 25051..25165 -
Gcaud7419.t1.exon2Gcaud7419.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_10_length_87931_cov_4.732901 25256..25388 -
Gcaud7419.t1.exon3Gcaud7419.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_10_length_87931_cov_4.732901 25487..25534 -
Gcaud7419.t1.exon4Gcaud7419.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_10_length_87931_cov_4.732901 25621..25639 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7419.t1.intron1Gcaud7419.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_10_length_87931_cov_4.732901 25166..25255 -
Gcaud7419.t1.intron2Gcaud7419.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_10_length_87931_cov_4.732901 25389..25486 -
Gcaud7419.t1.intron3Gcaud7419.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_10_length_87931_cov_4.732901 25535..25620 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7419.t1.start1Gcaud7419.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_10_length_87931_cov_4.732901 25637..25639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7419.t1 ID=Gcaud7419.t1|Name=Gcaud7419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=105bp
MGGDSEVVEPKMQCTDEEMAKHRIPIDFRDFCAHKLIPLNKCRRKNFYLP
FRCEDERHEYEKCQYDQYMRRVNEMKAIVREERKAALKARDEAETQARLE
QGAQ*
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spliced messenger RNA

>Gcaud7419.t1 ID=Gcaud7419.t1|Name=Gcaud7419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:25051..25639- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAGACTCCGAAGTTGTCGAACCGAAAATGCAGTGCACCGACGA
AGAAATGGCAAAGCATCGGATCCCGATCGACTTCAGGGATTTCTGTGCTC
ATAAGCTTATTCCTCTCAACAAGTGTCGTCGTAAAAACTTTTACCTCCCT
TTTCGTTGTGAAGATGAACGTCATGAGTATGAAAAGTGTCAATACGACCA
GTATATGCGAAGAGTGAACGAGATGAAAGCTATCGTAAGGGAAGAAAGGA
AAGCCGCCCTTAAAGCCCGTGACGAAGCTGAAACTCAGGCACGACTGGAA
CAAGGCGCTCAATAA
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protein sequence of Gcaud7419.t1

>Gcaud7419.t1 ID=Gcaud7419.t1|Name=Gcaud7419.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=105bp
MGGDSEVVEPKMQCTDEEMAKHRIPIDFRDFCAHKLIPLNKCRRKNFYLP
FRCEDERHEYEKCQYDQYMRRVNEMKAIVREERKAALKARDEAETQARLE
QGAQ*
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mRNA from alignment at NODE_10_length_87931_cov_4.732901:25051..25639-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7419.t1 ID=Gcaud7419.t1|Name=Gcaud7419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=589bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:25051..25639- (Gracilaria caudata M_176_S67 male)
ATGGGCGGAGACTCCGAAGGTACGCAATCGCATTCGGAAGAATCGAATGA
TGTGGATCGTCGAAACCAGGGTGCTGTGTGACTAACCTCATCGTCTTTCC
AACAGTTGTCGAACCGAAAATGCAGTGCACCGACGAAGAAATGGCAAAGC
ATCGTAAGTGAAAGCTTCAATTCAACTGGCGAAACCAAAAGCGAGGAGAT
TTTGTATCGATGTGCTGAAACTGACTAGTCAATGGAATATCTCGTTGGTA
GGGATCCCGATCGACTTCAGGGATTTCTGTGCTCATAAGCTTATTCCTCT
CAACAAGTGTCGTCGTAAAAACTTTTACCTCCCTTTTCGTTGTGAAGATG
AACGTCATGAGTATGAAAAGTGTCAATACGACCAGTAAGTTTAGTCCATA
TCCCGCATTTGCGGTGACTCAAATCCTCAGTATCTCTGTTCTAACTCTAG
GTCTCCTTCTCATCGCTCTTTTAGGTATATGCGAAGAGTGAACGAGATGA
AAGCTATCGTAAGGGAAGAAAGGAAAGCCGCCCTTAAAGCCCGTGACGAA
GCTGAAACTCAGGCACGACTGGAACAAGGCGCTCAATAA
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Coding sequence (CDS) from alignment at NODE_10_length_87931_cov_4.732901:25051..25639-

>Gcaud7419.t1 ID=Gcaud7419.t1|Name=Gcaud7419.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=315bp|location=Sequence derived from alignment at NODE_10_length_87931_cov_4.732901:25051..25639- (Gracilaria caudata M_176_S67 male)
ATGGGCGGAGACTCCGAAGTTGTCGAACCGAAAATGCAGTGCACCGACGA
AGAAATGGCAAAGCATCGGATCCCGATCGACTTCAGGGATTTCTGTGCTC
ATAAGCTTATTCCTCTCAACAAGTGTCGTCGTAAAAACTTTTACCTCCCT
TTTCGTTGTGAAGATGAACGTCATGAGTATGAAAAGTGTCAATACGACCA
GTATATGCGAAGAGTGAACGAGATGAAAGCTATCGTAAGGGAAGAAAGGA
AAGCCGCCCTTAAAGCCCGTGACGAAGCTGAAACTCAGGCACGACTGGAA
CAAGGCGCTCAATAA
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