Gcaud1317.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1317.t1
Unique Name	Gcaud1317.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:10792..11445 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	30611.ENSOGAP00000013036
Preferred name	PTPLB
PFAMs	PTPLA
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00770,RC01095
KEGG ko	ko:K10703
KEGG Reaction	R07760,R10827
KEGG Pathway	ko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG Module	M00415
GOs	GO:0000038,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006643,GO:0006665,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0018812,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019899,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046394,GO:0046467,GO:0046483,GO:0046949,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0080023,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901576
Evalue	2.28e-55
EggNOG OGs	COG5198@1\|root,KOG3187@2759\|Eukaryota,38E6D@33154\|Opisthokonta,3BAFA@33208\|Metazoa,3CZWF@33213\|Bilateria,4823Z@7711\|Chordata,48ZNB@7742\|Vertebrata,3J8S2@40674\|Mammalia,35J7C@314146\|Euarchontoglires,4M5PM@9443\|Primates
EC	4.2.1.134
Description	3-hydroxy-lignoceroyl-CoA dehydratase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1317	Gcaud1317	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 10792..11445 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1317.t1.stop1	Gcaud1317.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 10792..10794 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1317.t1.CDS1	Gcaud1317.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 10792..11445 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1317.t1.exon1	Gcaud1317.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 10792..11445 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1317.t1.start1	Gcaud1317.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 11443..11445 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1317.t1	Gcaud1317.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 10792..11445 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:10792..11445-
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:10792..11445-

mRNA sequence

>Gcaud1317.t1 ID=Gcaud1317.t1|Name=Gcaud1317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=218bp
MATRYLCMYNGAMAVGWSIVLMRLLQALVKRSSVYDAVCLPLNVFQTGAI
LEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVL
AWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMY
AALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLR
QRKKYVVAPAAKAAKTE*

spliced messenger RNA

>Gcaud1317.t1 ID=Gcaud1317.t1|Name=Gcaud1317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=654bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:10792..11445- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACTCGTTATCTCTGCATGTATAATGGTGCGATGGCCGTGGGCTG
GTCGATCGTGCTCATGCGTCTCCTCCAGGCGCTCGTGAAACGCTCATCTG
TCTACGATGCTGTTTGCCTTCCACTCAATGTTTTCCAGACGGGTGCCATT
CTGGAGATCATCCACAGTCTCACGGGTTTAGTTCGCGCTCCAGTCTCCAC
CACCACCCTGCAAGTTGCATCGCGTCTCATGCTAGTCTGGGGTATAGTCG
ATCCTGTTCCACAAATTCGATCTAATATTTCCTTCACCACTATGGTTCTT
GCATGGTCTCTCACCGAAATCCCTCGATACTTGTACTTTACTGTGTCGTC
CTTTGCTTCCCACGTTCCCTATTGGCTTACGTATCTCAGGTATTCGACCT
TCCTTCCCCTCTACCCGCTTGGCGCGTCAAGCGAATGGTTAACGATGTAT
GCTGCGCTTTCGTACATCCGCGATTTCAAACTATACACAGTTTCGTTGCC
GAACCGCTTTAACTTCGCCTTCGATTATTACGTGTATGTAATTCTTCTTC
TCGTCCTTTACATACCAGGGCTACCCCATATGTACTCACACATGCTTCGA
CAACGCAAGAAGTATGTTGTCGCTCCGGCCGCCAAAGCAGCCAAGACTGA
ATGA

protein sequence of Gcaud1317.t1

>Gcaud1317.t1 ID=Gcaud1317.t1|Name=Gcaud1317.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=218bp
MATRYLCMYNGAMAVGWSIVLMRLLQALVKRSSVYDAVCLPLNVFQTGAI
LEIIHSLTGLVRAPVSTTTLQVASRLMLVWGIVDPVPQIRSNISFTTMVL
AWSLTEIPRYLYFTVSSFASHVPYWLTYLRYSTFLPLYPLGASSEWLTMY
AALSYIRDFKLYTVSLPNRFNFAFDYYVYVILLLVLYIPGLPHMYSHMLR
QRKKYVVAPAAKAAKTE*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:10792..11445-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1317.t1 ID=Gcaud1317.t1|Name=Gcaud1317.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=654bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:10792..11445- (Gracilaria caudata M_176_S67 male)
ATGGCTACTCGTTATCTCTGCATGTATAATGGTGCGATGGCCGTGGGCTG
GTCGATCGTGCTCATGCGTCTCCTCCAGGCGCTCGTGAAACGCTCATCTG
TCTACGATGCTGTTTGCCTTCCACTCAATGTTTTCCAGACGGGTGCCATT
CTGGAGATCATCCACAGTCTCACGGGTTTAGTTCGCGCTCCAGTCTCCAC
CACCACCCTGCAAGTTGCATCGCGTCTCATGCTAGTCTGGGGTATAGTCG
ATCCTGTTCCACAAATTCGATCTAATATTTCCTTCACCACTATGGTTCTT
GCATGGTCTCTCACCGAAATCCCTCGATACTTGTACTTTACTGTGTCGTC
CTTTGCTTCCCACGTTCCCTATTGGCTTACGTATCTCAGGTATTCGACCT
TCCTTCCCCTCTACCCGCTTGGCGCGTCAAGCGAATGGTTAACGATGTAT
GCTGCGCTTTCGTACATCCGCGATTTCAAACTATACACAGTTTCGTTGCC
GAACCGCTTTAACTTCGCCTTCGATTATTACGTGTATGTAATTCTTCTTC
TCGTCCTTTACATACCAGGGCTACCCCATATGTACTCACACATGCTTCGA
CAACGCAAGAAGTATGTTGTCGCTCCGGCCGCCAAAGCAGCCAAGACTGA
ATGA

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:10792..11445-

>Gcaud1317.t1 ID=Gcaud1317.t1|Name=Gcaud1317.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=654bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:10792..11445- (Gracilaria caudata M_176_S67 male)
ATGGCTACTCGTTATCTCTGCATGTATAATGGTGCGATGGCCGTGGGCTG
GTCGATCGTGCTCATGCGTCTCCTCCAGGCGCTCGTGAAACGCTCATCTG
TCTACGATGCTGTTTGCCTTCCACTCAATGTTTTCCAGACGGGTGCCATT
CTGGAGATCATCCACAGTCTCACGGGTTTAGTTCGCGCTCCAGTCTCCAC
CACCACCCTGCAAGTTGCATCGCGTCTCATGCTAGTCTGGGGTATAGTCG
ATCCTGTTCCACAAATTCGATCTAATATTTCCTTCACCACTATGGTTCTT
GCATGGTCTCTCACCGAAATCCCTCGATACTTGTACTTTACTGTGTCGTC
CTTTGCTTCCCACGTTCCCTATTGGCTTACGTATCTCAGGTATTCGACCT
TCCTTCCCCTCTACCCGCTTGGCGCGTCAAGCGAATGGTTAACGATGTAT
GCTGCGCTTTCGTACATCCGCGATTTCAAACTATACACAGTTTCGTTGCC
GAACCGCTTTAACTTCGCCTTCGATTATTACGTGTATGTAATTCTTCTTC
TCGTCCTTTACATACCAGGGCTACCCCATATGTACTCACACATGCTTCGA
CAACGCAAGAAGTATGTTGTCGCTCCGGCCGCCAAAGCAGCCAAGACTGA
ATGA