Gcaud1315.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1315.t1
Unique Name	Gcaud1315.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:6275..7210 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S245_2V6.1
PFAMs	HAD_2
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue	6.95e-81
EggNOG OGs	COG0637@1\|root,KOG2914@2759\|Eukaryota,37KNJ@33090\|Viridiplantae,3G8EX@35493\|Streptophyta
Description	Haloacid dehalogenase-like hydrolase domain-containing protein At3g48420
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1315	Gcaud1315	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 6275..7210 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1315.t1.start1	Gcaud1315.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 6275..6277 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1315.t1.CDS1	Gcaud1315.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 6275..7210 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1315.t1.exon1	Gcaud1315.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 6275..7210 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1315.t1.stop1	Gcaud1315.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 7208..7210 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1315.t1	Gcaud1315.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 6275..7210 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+

mRNA sequence

>Gcaud1315.t1 ID=Gcaud1315.t1|Name=Gcaud1315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
MAAFVSANGISLSKTKYLRTKHYAPYQNKSRVISPNKRSNRLPTKSALDA
LIFDCDGVLADTERDAHRVAFNIAFEERRLNTVWDEKLYGKLLETGGGKE
RMTAYWNGLGQWPAGADSGSEQKALVKALHARKTELFMELVQAGKVPLRE
GVKRLVREAMEAGIKVAVCSTSNEKAVNKIVEMLGDDASTISVFAGDIVE
KKKPSPDVYNLAAEKLNLNPSNVCVIEDSYIGVQAARAARMPVVVTKSTY
TRDEDFSDAQKVLNSLDDPQTTLEILTQMVEGLQTNDSPKSGIGQVGRFR
SARRGYGTRYL*

spliced messenger RNA

>Gcaud1315.t1 ID=Gcaud1315.t1|Name=Gcaud1315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGTTCGTTAGTGCTAACGGAATCTCGCTATCCAAAACAAAATA
CCTCCGAACGAAACACTACGCACCATATCAGAACAAATCACGGGTCATCT
CTCCGAACAAAAGGTCCAATCGACTCCCGACAAAATCAGCGCTTGATGCC
CTCATCTTCGACTGTGACGGAGTGCTGGCTGATACAGAACGCGATGCGCA
CAGAGTGGCGTTCAACATTGCCTTCGAGGAACGAAGACTAAACACTGTGT
GGGATGAAAAGCTGTACGGGAAGCTCTTGGAAACAGGCGGAGGAAAGGAA
CGTATGACCGCCTATTGGAACGGTTTGGGACAATGGCCAGCTGGCGCTGA
CTCTGGATCAGAGCAGAAAGCTTTGGTTAAAGCTCTTCACGCACGAAAGA
CCGAATTGTTTATGGAACTTGTCCAGGCTGGAAAGGTTCCCTTACGGGAA
GGCGTAAAGCGACTTGTGCGTGAGGCCATGGAAGCAGGTATAAAAGTCGC
AGTGTGTAGCACATCCAATGAGAAAGCTGTGAACAAAATTGTGGAGATGC
TTGGCGACGACGCTTCCACCATTTCCGTATTTGCCGGAGATATTGTTGAG
AAGAAAAAACCAAGCCCAGATGTATATAACTTGGCCGCAGAAAAGCTAAA
TCTAAATCCTTCCAATGTTTGCGTTATTGAAGACAGTTATATTGGAGTAC
AGGCTGCGCGTGCTGCGAGAATGCCAGTGGTGGTTACAAAGTCGACGTAC
ACAAGAGACGAAGACTTTTCAGATGCACAGAAGGTACTCAATTCCCTGGA
TGACCCACAAACAACTTTAGAAATTCTGACTCAAATGGTCGAAGGTCTGC
AAACGAATGACAGTCCAAAAAGCGGAATAGGTCAAGTTGGAAGATTCCGT
TCTGCCCGCCGTGGATATGGCACGAGATACTTGTGA

protein sequence of Gcaud1315.t1

>Gcaud1315.t1 ID=Gcaud1315.t1|Name=Gcaud1315.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MAAFVSANGISLSKTKYLRTKHYAPYQNKSRVISPNKRSNRLPTKSALDA
LIFDCDGVLADTERDAHRVAFNIAFEERRLNTVWDEKLYGKLLETGGGKE
RMTAYWNGLGQWPAGADSGSEQKALVKALHARKTELFMELVQAGKVPLRE
GVKRLVREAMEAGIKVAVCSTSNEKAVNKIVEMLGDDASTISVFAGDIVE
KKKPSPDVYNLAAEKLNLNPSNVCVIEDSYIGVQAARAARMPVVVTKSTY
TRDEDFSDAQKVLNSLDDPQTTLEILTQMVEGLQTNDSPKSGIGQVGRFR
SARRGYGTRYL*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1315.t1 ID=Gcaud1315.t1|Name=Gcaud1315.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+ (Gracilaria caudata M_176_S67 male)
ATGGCGGCGTTCGTTAGTGCTAACGGAATCTCGCTATCCAAAACAAAATA
CCTCCGAACGAAACACTACGCACCATATCAGAACAAATCACGGGTCATCT
CTCCGAACAAAAGGTCCAATCGACTCCCGACAAAATCAGCGCTTGATGCC
CTCATCTTCGACTGTGACGGAGTGCTGGCTGATACAGAACGCGATGCGCA
CAGAGTGGCGTTCAACATTGCCTTCGAGGAACGAAGACTAAACACTGTGT
GGGATGAAAAGCTGTACGGGAAGCTCTTGGAAACAGGCGGAGGAAAGGAA
CGTATGACCGCCTATTGGAACGGTTTGGGACAATGGCCAGCTGGCGCTGA
CTCTGGATCAGAGCAGAAAGCTTTGGTTAAAGCTCTTCACGCACGAAAGA
CCGAATTGTTTATGGAACTTGTCCAGGCTGGAAAGGTTCCCTTACGGGAA
GGCGTAAAGCGACTTGTGCGTGAGGCCATGGAAGCAGGTATAAAAGTCGC
AGTGTGTAGCACATCCAATGAGAAAGCTGTGAACAAAATTGTGGAGATGC
TTGGCGACGACGCTTCCACCATTTCCGTATTTGCCGGAGATATTGTTGAG
AAGAAAAAACCAAGCCCAGATGTATATAACTTGGCCGCAGAAAAGCTAAA
TCTAAATCCTTCCAATGTTTGCGTTATTGAAGACAGTTATATTGGAGTAC
AGGCTGCGCGTGCTGCGAGAATGCCAGTGGTGGTTACAAAGTCGACGTAC
ACAAGAGACGAAGACTTTTCAGATGCACAGAAGGTACTCAATTCCCTGGA
TGACCCACAAACAACTTTAGAAATTCTGACTCAAATGGTCGAAGGTCTGC
AAACGAATGACAGTCCAAAAAGCGGAATAGGTCAAGTTGGAAGATTCCGT
TCTGCCCGCCGTGGATATGGCACGAGATACTTGTGA

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+

>Gcaud1315.t1 ID=Gcaud1315.t1|Name=Gcaud1315.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:6275..7210+ (Gracilaria caudata M_176_S67 male)
ATGGCGGCGTTCGTTAGTGCTAACGGAATCTCGCTATCCAAAACAAAATA
CCTCCGAACGAAACACTACGCACCATATCAGAACAAATCACGGGTCATCT
CTCCGAACAAAAGGTCCAATCGACTCCCGACAAAATCAGCGCTTGATGCC
CTCATCTTCGACTGTGACGGAGTGCTGGCTGATACAGAACGCGATGCGCA
CAGAGTGGCGTTCAACATTGCCTTCGAGGAACGAAGACTAAACACTGTGT
GGGATGAAAAGCTGTACGGGAAGCTCTTGGAAACAGGCGGAGGAAAGGAA
CGTATGACCGCCTATTGGAACGGTTTGGGACAATGGCCAGCTGGCGCTGA
CTCTGGATCAGAGCAGAAAGCTTTGGTTAAAGCTCTTCACGCACGAAAGA
CCGAATTGTTTATGGAACTTGTCCAGGCTGGAAAGGTTCCCTTACGGGAA
GGCGTAAAGCGACTTGTGCGTGAGGCCATGGAAGCAGGTATAAAAGTCGC
AGTGTGTAGCACATCCAATGAGAAAGCTGTGAACAAAATTGTGGAGATGC
TTGGCGACGACGCTTCCACCATTTCCGTATTTGCCGGAGATATTGTTGAG
AAGAAAAAACCAAGCCCAGATGTATATAACTTGGCCGCAGAAAAGCTAAA
TCTAAATCCTTCCAATGTTTGCGTTATTGAAGACAGTTATATTGGAGTAC
AGGCTGCGCGTGCTGCGAGAATGCCAGTGGTGGTTACAAAGTCGACGTAC
ACAAGAGACGAAGACTTTTCAGATGCACAGAAGGTACTCAATTCCCTGGA
TGACCCACAAACAACTTTAGAAATTCTGACTCAAATGGTCGAAGGTCTGC
AAACGAATGACAGTCCAAAAAGCGGAATAGGTCAAGTTGGAAGATTCCGT
TCTGCCCGCCGTGGATATGGCACGAGATACTTGTGA