Gcaud1322.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1322.t1
Unique Name	Gcaud1322.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	259

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:22206..22982 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3702.AT2G31040.1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02116
KEGG TC	3.A.2.1
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009658,GO:0009987,GO:0016020,GO:0016043,GO:0022607,GO:0031976,GO:0031984,GO:0033614,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0070071,GO:0071840
Evalue	1.72e-12
EggNOG OGs	28P0P@1\|root,2QVM8@2759\|Eukaryota,37IM5@33090\|Viridiplantae,3G8Y5@35493\|Streptophyta,3HU3B@3699\|Brassicales
Description	ATP synthase protein
COG category	S
BRITE	ko00000,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1322	Gcaud1322	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 22206..22982 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1322.t1.stop1	Gcaud1322.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 22206..22208 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1322.t1.CDS1	Gcaud1322.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 22206..22982 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1322.t1.exon1	Gcaud1322.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 22206..22982 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1322.t1.start1	Gcaud1322.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 22980..22982 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1322.t1	Gcaud1322.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 22206..22982 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:22206..22982-
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:22206..22982-

mRNA sequence

>Gcaud1322.t1 ID=Gcaud1322.t1|Name=Gcaud1322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=259bp
MMSYAFTQLVVLGNNGNKASSWTKCLKKAFVRVSRHNGSQASCGRSRQTV
QANSLEDSKRRAKSQYDNIPDLNQQYLAELSWVERKYGPQRLTKDIGKEA
QRSILRSDRQPGNKQSGVAKTVDQTKREGEDSEADLEQYKALRNKLVGDT
LFVGALGLCAIWTVGSIKEVQSFAVGLLGSIAYVSLLSRSVDRLGESARQ
NGRGTADSLQPARIAILVLLVIASAKNSQYLSVVPVLAGFFSYKVAVLIP
LLTGEAFD*

spliced messenger RNA

>Gcaud1322.t1 ID=Gcaud1322.t1|Name=Gcaud1322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:22206..22982- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAGTTACGCCTTCACTCAGCTGGTTGTGTTGGGCAACAACGGCAA
CAAAGCTTCGAGCTGGACAAAATGTTTGAAGAAGGCTTTTGTACGTGTAT
CAAGACATAACGGCTCACAAGCAAGCTGTGGGCGTTCACGACAGACAGTG
CAAGCAAATTCGTTGGAGGACTCGAAACGTCGGGCAAAATCGCAATACGA
CAACATCCCAGATTTGAACCAGCAATACCTGGCAGAGTTGAGCTGGGTGG
AACGAAAATATGGTCCGCAACGATTGACCAAGGACATTGGCAAGGAAGCT
CAGCGAAGCATTCTTCGAAGCGATAGACAGCCCGGAAACAAACAGTCGGG
GGTCGCAAAGACAGTTGACCAGACAAAGAGAGAAGGTGAGGACTCGGAAG
CGGACTTGGAACAGTACAAAGCCCTTCGCAACAAGCTAGTTGGCGATACA
CTATTCGTGGGCGCGCTCGGACTGTGCGCCATTTGGACGGTGGGCAGCAT
CAAGGAAGTGCAGTCGTTCGCTGTAGGCCTGCTCGGTTCGATAGCGTATG
TATCACTACTGAGCAGAAGCGTGGATAGACTCGGCGAGAGCGCCCGACAA
AACGGCCGCGGCACGGCGGACAGCCTACAACCGGCACGCATCGCGATCCT
GGTGCTGCTGGTCATCGCTTCGGCGAAGAACTCGCAGTATCTTTCGGTAG
TCCCGGTGCTGGCGGGCTTCTTTTCGTACAAGGTCGCGGTGCTAATTCCG
CTGCTAACCGGGGAGGCTTTCGATTGA

protein sequence of Gcaud1322.t1

>Gcaud1322.t1 ID=Gcaud1322.t1|Name=Gcaud1322.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=259bp
MMSYAFTQLVVLGNNGNKASSWTKCLKKAFVRVSRHNGSQASCGRSRQTV
QANSLEDSKRRAKSQYDNIPDLNQQYLAELSWVERKYGPQRLTKDIGKEA
QRSILRSDRQPGNKQSGVAKTVDQTKREGEDSEADLEQYKALRNKLVGDT
LFVGALGLCAIWTVGSIKEVQSFAVGLLGSIAYVSLLSRSVDRLGESARQ
NGRGTADSLQPARIAILVLLVIASAKNSQYLSVVPVLAGFFSYKVAVLIP
LLTGEAFD*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:22206..22982-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1322.t1 ID=Gcaud1322.t1|Name=Gcaud1322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=777bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:22206..22982- (Gracilaria caudata M_176_S67 male)
ATGATGAGTTACGCCTTCACTCAGCTGGTTGTGTTGGGCAACAACGGCAA
CAAAGCTTCGAGCTGGACAAAATGTTTGAAGAAGGCTTTTGTACGTGTAT
CAAGACATAACGGCTCACAAGCAAGCTGTGGGCGTTCACGACAGACAGTG
CAAGCAAATTCGTTGGAGGACTCGAAACGTCGGGCAAAATCGCAATACGA
CAACATCCCAGATTTGAACCAGCAATACCTGGCAGAGTTGAGCTGGGTGG
AACGAAAATATGGTCCGCAACGATTGACCAAGGACATTGGCAAGGAAGCT
CAGCGAAGCATTCTTCGAAGCGATAGACAGCCCGGAAACAAACAGTCGGG
GGTCGCAAAGACAGTTGACCAGACAAAGAGAGAAGGTGAGGACTCGGAAG
CGGACTTGGAACAGTACAAAGCCCTTCGCAACAAGCTAGTTGGCGATACA
CTATTCGTGGGCGCGCTCGGACTGTGCGCCATTTGGACGGTGGGCAGCAT
CAAGGAAGTGCAGTCGTTCGCTGTAGGCCTGCTCGGTTCGATAGCGTATG
TATCACTACTGAGCAGAAGCGTGGATAGACTCGGCGAGAGCGCCCGACAA
AACGGCCGCGGCACGGCGGACAGCCTACAACCGGCACGCATCGCGATCCT
GGTGCTGCTGGTCATCGCTTCGGCGAAGAACTCGCAGTATCTTTCGGTAG
TCCCGGTGCTGGCGGGCTTCTTTTCGTACAAGGTCGCGGTGCTAATTCCG
CTGCTAACCGGGGAGGCTTTCGATTGA

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:22206..22982-

>Gcaud1322.t1 ID=Gcaud1322.t1|Name=Gcaud1322.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=777bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:22206..22982- (Gracilaria caudata M_176_S67 male)
ATGATGAGTTACGCCTTCACTCAGCTGGTTGTGTTGGGCAACAACGGCAA
CAAAGCTTCGAGCTGGACAAAATGTTTGAAGAAGGCTTTTGTACGTGTAT
CAAGACATAACGGCTCACAAGCAAGCTGTGGGCGTTCACGACAGACAGTG
CAAGCAAATTCGTTGGAGGACTCGAAACGTCGGGCAAAATCGCAATACGA
CAACATCCCAGATTTGAACCAGCAATACCTGGCAGAGTTGAGCTGGGTGG
AACGAAAATATGGTCCGCAACGATTGACCAAGGACATTGGCAAGGAAGCT
CAGCGAAGCATTCTTCGAAGCGATAGACAGCCCGGAAACAAACAGTCGGG
GGTCGCAAAGACAGTTGACCAGACAAAGAGAGAAGGTGAGGACTCGGAAG
CGGACTTGGAACAGTACAAAGCCCTTCGCAACAAGCTAGTTGGCGATACA
CTATTCGTGGGCGCGCTCGGACTGTGCGCCATTTGGACGGTGGGCAGCAT
CAAGGAAGTGCAGTCGTTCGCTGTAGGCCTGCTCGGTTCGATAGCGTATG
TATCACTACTGAGCAGAAGCGTGGATAGACTCGGCGAGAGCGCCCGACAA
AACGGCCGCGGCACGGCGGACAGCCTACAACCGGCACGCATCGCGATCCT
GGTGCTGCTGGTCATCGCTTCGGCGAAGAACTCGCAGTATCTTTCGGTAG
TCCCGGTGCTGGCGGGCTTCTTTTCGTACAAGGTCGCGGTGCTAATTCCG
CTGCTAACCGGGGAGGCTTTCGATTGA