Gcaud1321.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1321.t1
Unique Name	Gcaud1321.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:20479..21741 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AES74398
PFAMs	TPT
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15283
KEGG TC	2.A.7.9
GOs	GO:0003674,GO:0005215,GO:0005342,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008509,GO:0008514,GO:0009670,GO:0015075,GO:0015121,GO:0015291,GO:0015297,GO:0015301,GO:0015318,GO:0015355,GO:0015605,GO:0015711,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015849,GO:0022804,GO:0022857,GO:0034220,GO:0035436,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071917,GO:0089721,GO:0089722,GO:0098656,GO:0099516,GO:1901264,GO:1903825,GO:1905039
Evalue	3.72e-25
EggNOG OGs	KOG1441@1\|root,KOG1441@2759\|Eukaryota,37RXZ@33090\|Viridiplantae,3GFJR@35493\|Streptophyta,4JEMW@91835\|fabids
Description	Phosphoenolpyruvate phosphate translocator 2
COG category	EG
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1321	Gcaud1321	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 20479..21741 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1321.t1.stop1	Gcaud1321.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 20479..20481 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1321.t1.CDS1	Gcaud1321.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 20479..21741 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1321.t1.exon1	Gcaud1321.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 20479..21741 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1321.t1.start1	Gcaud1321.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 21739..21741 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1321.t1	Gcaud1321.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 20479..21741 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:20479..21741-
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:20479..21741-

mRNA sequence

>Gcaud1321.t1 ID=Gcaud1321.t1|Name=Gcaud1321.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=421bp
MGMGGSAHRDMPTPALRLFDSSSSTVTRLNALLPRVRVALFISGWFSFSL
ASLFIAKHVLHVYEINEAIFTLWQFASSVLFGLLFTKVLQIRPLAVLTRA
QLRAVVPLSAAFLVKEVLKYASLARVSVNLVNTIRSLGPLFNVLLELFFF
GHRPPASVVWALLPIILGVALTSIDEIHSASVSSAELIVAVIGFIAAVLS
TAINNAQNIYSKVLFGKERIDPVSLQIYLSAISLALMSPGSLVQLAYHII
AHDLPAHTFLAPSWPVAAGLALAGLVNFAASQLAFNTLNLISPLSYSVAN
TFKRVCIAVIAIFYFNERLSPVNGVGIVISIVGVFIYERKARALKEAKMY
RKVATTPRSSSLPNRKQNASGPDLVNMALDLTSPRAEVRKDMSNLPHYGE
LSLTPSAIARSHQANSNSRS*

spliced messenger RNA

>Gcaud1321.t1 ID=Gcaud1321.t1|Name=Gcaud1321.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:20479..21741- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATGGGGGGTAGTGCCCACCGAGATATGCCCACCCCGGCGCTGCG
TCTGTTCGACTCTTCCTCCTCTACCGTGACTCGCCTCAATGCGCTTCTTC
CCCGAGTCAGGGTTGCTCTATTTATTTCCGGCTGGTTTTCGTTTTCGCTC
GCAAGTCTCTTCATAGCCAAGCATGTGCTGCACGTTTACGAGATCAATGA
GGCTATTTTCACCCTATGGCAGTTTGCCTCCTCCGTGCTCTTCGGCCTCC
TGTTCACAAAAGTGCTTCAAATACGACCGCTCGCCGTTCTCACACGTGCA
CAGCTGCGCGCAGTCGTCCCCTTAAGCGCCGCCTTCCTCGTCAAGGAAGT
GCTCAAGTACGCCTCGCTTGCACGTGTTTCCGTCAATCTTGTCAACACTA
TCCGATCACTTGGACCGCTGTTTAATGTGCTGTTGGAACTGTTCTTTTTC
GGTCACCGTCCTCCAGCCTCCGTCGTGTGGGCACTGCTGCCAATTATCCT
TGGTGTCGCTCTAACCAGCATTGACGAGATTCACAGCGCTTCCGTTTCGA
GCGCAGAGCTCATTGTCGCCGTCATCGGCTTTATAGCAGCGGTTCTGTCT
ACTGCAATCAACAACGCTCAGAACATTTACTCCAAGGTGCTTTTTGGTAA
GGAACGTATAGACCCCGTGTCGCTCCAGATCTATCTGTCTGCCATTTCAC
TTGCGCTCATGTCGCCAGGTAGTCTAGTGCAACTCGCTTACCACATTATC
GCACATGATCTACCCGCACATACCTTTTTAGCACCATCATGGCCGGTTGC
CGCAGGCTTAGCTCTCGCCGGGCTAGTCAATTTTGCCGCTTCCCAGTTGG
CTTTTAACACACTCAATCTCATATCCCCGTTGAGCTACTCAGTTGCCAAT
ACTTTCAAGCGAGTCTGTATCGCAGTGATTGCAATTTTTTACTTCAACGA
ACGTTTATCGCCCGTCAACGGTGTTGGTATTGTTATATCAATCGTCGGTG
TTTTCATCTACGAGCGTAAGGCGAGGGCCCTCAAAGAAGCCAAAATGTAT
AGAAAAGTGGCTACAACACCGCGCTCCTCATCTCTCCCAAACCGAAAACA
AAATGCTTCAGGTCCGGATCTTGTCAATATGGCCCTGGACTTAACTAGCC
CACGAGCTGAAGTTCGCAAAGATATGTCTAATTTGCCTCACTATGGAGAA
CTTTCGCTAACCCCCTCAGCCATAGCAAGATCGCACCAAGCAAACTCTAA
CTCCAGATCATAG

protein sequence of Gcaud1321.t1

>Gcaud1321.t1 ID=Gcaud1321.t1|Name=Gcaud1321.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MGMGGSAHRDMPTPALRLFDSSSSTVTRLNALLPRVRVALFISGWFSFSL
ASLFIAKHVLHVYEINEAIFTLWQFASSVLFGLLFTKVLQIRPLAVLTRA
QLRAVVPLSAAFLVKEVLKYASLARVSVNLVNTIRSLGPLFNVLLELFFF
GHRPPASVVWALLPIILGVALTSIDEIHSASVSSAELIVAVIGFIAAVLS
TAINNAQNIYSKVLFGKERIDPVSLQIYLSAISLALMSPGSLVQLAYHII
AHDLPAHTFLAPSWPVAAGLALAGLVNFAASQLAFNTLNLISPLSYSVAN
TFKRVCIAVIAIFYFNERLSPVNGVGIVISIVGVFIYERKARALKEAKMY
RKVATTPRSSSLPNRKQNASGPDLVNMALDLTSPRAEVRKDMSNLPHYGE
LSLTPSAIARSHQANSNSRS*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:20479..21741-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1321.t1 ID=Gcaud1321.t1|Name=Gcaud1321.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:20479..21741- (Gracilaria caudata M_176_S67 male)
ATGGGTATGGGGGGTAGTGCCCACCGAGATATGCCCACCCCGGCGCTGCG
TCTGTTCGACTCTTCCTCCTCTACCGTGACTCGCCTCAATGCGCTTCTTC
CCCGAGTCAGGGTTGCTCTATTTATTTCCGGCTGGTTTTCGTTTTCGCTC
GCAAGTCTCTTCATAGCCAAGCATGTGCTGCACGTTTACGAGATCAATGA
GGCTATTTTCACCCTATGGCAGTTTGCCTCCTCCGTGCTCTTCGGCCTCC
TGTTCACAAAAGTGCTTCAAATACGACCGCTCGCCGTTCTCACACGTGCA
CAGCTGCGCGCAGTCGTCCCCTTAAGCGCCGCCTTCCTCGTCAAGGAAGT
GCTCAAGTACGCCTCGCTTGCACGTGTTTCCGTCAATCTTGTCAACACTA
TCCGATCACTTGGACCGCTGTTTAATGTGCTGTTGGAACTGTTCTTTTTC
GGTCACCGTCCTCCAGCCTCCGTCGTGTGGGCACTGCTGCCAATTATCCT
TGGTGTCGCTCTAACCAGCATTGACGAGATTCACAGCGCTTCCGTTTCGA
GCGCAGAGCTCATTGTCGCCGTCATCGGCTTTATAGCAGCGGTTCTGTCT
ACTGCAATCAACAACGCTCAGAACATTTACTCCAAGGTGCTTTTTGGTAA
GGAACGTATAGACCCCGTGTCGCTCCAGATCTATCTGTCTGCCATTTCAC
TTGCGCTCATGTCGCCAGGTAGTCTAGTGCAACTCGCTTACCACATTATC
GCACATGATCTACCCGCACATACCTTTTTAGCACCATCATGGCCGGTTGC
CGCAGGCTTAGCTCTCGCCGGGCTAGTCAATTTTGCCGCTTCCCAGTTGG
CTTTTAACACACTCAATCTCATATCCCCGTTGAGCTACTCAGTTGCCAAT
ACTTTCAAGCGAGTCTGTATCGCAGTGATTGCAATTTTTTACTTCAACGA
ACGTTTATCGCCCGTCAACGGTGTTGGTATTGTTATATCAATCGTCGGTG
TTTTCATCTACGAGCGTAAGGCGAGGGCCCTCAAAGAAGCCAAAATGTAT
AGAAAAGTGGCTACAACACCGCGCTCCTCATCTCTCCCAAACCGAAAACA
AAATGCTTCAGGTCCGGATCTTGTCAATATGGCCCTGGACTTAACTAGCC
CACGAGCTGAAGTTCGCAAAGATATGTCTAATTTGCCTCACTATGGAGAA
CTTTCGCTAACCCCCTCAGCCATAGCAAGATCGCACCAAGCAAACTCTAA
CTCCAGATCATAG

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:20479..21741-

>Gcaud1321.t1 ID=Gcaud1321.t1|Name=Gcaud1321.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1263bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:20479..21741- (Gracilaria caudata M_176_S67 male)
ATGGGTATGGGGGGTAGTGCCCACCGAGATATGCCCACCCCGGCGCTGCG
TCTGTTCGACTCTTCCTCCTCTACCGTGACTCGCCTCAATGCGCTTCTTC
CCCGAGTCAGGGTTGCTCTATTTATTTCCGGCTGGTTTTCGTTTTCGCTC
GCAAGTCTCTTCATAGCCAAGCATGTGCTGCACGTTTACGAGATCAATGA
GGCTATTTTCACCCTATGGCAGTTTGCCTCCTCCGTGCTCTTCGGCCTCC
TGTTCACAAAAGTGCTTCAAATACGACCGCTCGCCGTTCTCACACGTGCA
CAGCTGCGCGCAGTCGTCCCCTTAAGCGCCGCCTTCCTCGTCAAGGAAGT
GCTCAAGTACGCCTCGCTTGCACGTGTTTCCGTCAATCTTGTCAACACTA
TCCGATCACTTGGACCGCTGTTTAATGTGCTGTTGGAACTGTTCTTTTTC
GGTCACCGTCCTCCAGCCTCCGTCGTGTGGGCACTGCTGCCAATTATCCT
TGGTGTCGCTCTAACCAGCATTGACGAGATTCACAGCGCTTCCGTTTCGA
GCGCAGAGCTCATTGTCGCCGTCATCGGCTTTATAGCAGCGGTTCTGTCT
ACTGCAATCAACAACGCTCAGAACATTTACTCCAAGGTGCTTTTTGGTAA
GGAACGTATAGACCCCGTGTCGCTCCAGATCTATCTGTCTGCCATTTCAC
TTGCGCTCATGTCGCCAGGTAGTCTAGTGCAACTCGCTTACCACATTATC
GCACATGATCTACCCGCACATACCTTTTTAGCACCATCATGGCCGGTTGC
CGCAGGCTTAGCTCTCGCCGGGCTAGTCAATTTTGCCGCTTCCCAGTTGG
CTTTTAACACACTCAATCTCATATCCCCGTTGAGCTACTCAGTTGCCAAT
ACTTTCAAGCGAGTCTGTATCGCAGTGATTGCAATTTTTTACTTCAACGA
ACGTTTATCGCCCGTCAACGGTGTTGGTATTGTTATATCAATCGTCGGTG
TTTTCATCTACGAGCGTAAGGCGAGGGCCCTCAAAGAAGCCAAAATGTAT
AGAAAAGTGGCTACAACACCGCGCTCCTCATCTCTCCCAAACCGAAAACA
AAATGCTTCAGGTCCGGATCTTGTCAATATGGCCCTGGACTTAACTAGCC
CACGAGCTGAAGTTCGCAAAGATATGTCTAATTTGCCTCACTATGGAGAA
CTTTCGCTAACCCCCTCAGCCATAGCAAGATCGCACCAAGCAAACTCTAA
CTCCAGATCATAG