Gcaud9999.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9999.t1
Unique NameGcaud9999.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length205
Homology
BLAST of Gcaud9999.t1 vs. uniprot
Match: A0A2V3II36_9FLOR (Diaminopimelate epimerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II36_9FLOR)

HSP 1 Score: 321 bits (822), Expect = 7.470e-108
Identity = 152/198 (76.77%), Postives = 174/198 (87.88%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPG 198
            MRLYNSDGTEPEMCGNGIRCLARFA+DLG+H +T GKYVVD+GAGE+VP+ME GSE V+VDMG PI++P+ VPT LNT+  N YQDVLKG+AGRDWTF  VSMG+ HAITFV K  YDDMDS LEA+GP FENH VFPQRTNTE V++ SKT+FDM+VWERG+G+TMA GTGACAVLVAAVLTGRA+KDV  +IHLPG
Sbjct:  121 MRLYNSDGTEPEMCGNGIRCLARFAADLGLHGKTPGKYVVDTGAGEIVPEMEPGSEEVRVDMGTPILEPQNVPTKLNTTEANGYQDVLKGVAGRDWTFVCVSMGNPHAITFVTKKEYDDMDSRLEAVGPDFENHSVFPQRTNTEFVFERSKTEFDMLVWERGAGRTMACGTGACAVLVAAVLTGRADKDVPVIIHLPG 318          
BLAST of Gcaud9999.t1 vs. uniprot
Match: R7QGK7_CHOCR (Diaminopimelate epimerase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGK7_CHOCR)

HSP 1 Score: 277 bits (708), Expect = 2.130e-90
Identity = 133/204 (65.20%), Postives = 168/204 (82.35%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MRLYNSDGTEPEMCGNGIRCLA+FA DL +   + G++V+D+GAG ++P++E GS  VKVDMG P++ P +VPT L+TS    Y+ VL  + G DWTFS VSMG+ HAI+FV+K+V+ +MD+ LE +GPSFE +PVFPQ+TNTE  +Q  +T+FDM+VWERG+G+TMA GTGACAVLVAAVLTGRA+KD  TVIHLPGGDLTI+
Sbjct:  104 MRLYNSDGTEPEMCGNGIRCLAKFADDLKIPTASPGRFVIDTGAGVIIPEIEQGSSEVKVDMGEPVIIPGEVPTTLDTSESAGYEAVLN-VDGTDWTFSCVSMGNPHAISFVSKEVFLEMDTKLEEVGPSFECNPVFPQKTNTEWAFQRCRTEFDMLVWERGAGRTMACGTGACAVLVAAVLTGRADKDQPTVIHLPGGDLTIE 306          
BLAST of Gcaud9999.t1 vs. uniprot
Match: A0A1Z4RF15_9CYAN (Diaminopimelate epimerase n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4RF15_9CYAN)

HSP 1 Score: 183 bits (464), Expect = 3.420e-54
Identity = 99/205 (48.29%), Postives = 137/205 (66.83%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSL-LEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR++NSDG+EPEMCGNGIRCLA F +DL    R + +Y + + AG ++PQ+    + +KVDMG P +   ++PT L+ S     +  ++ +AG+ W  + VSMG+ H ITFV     DD+ ++ LE +GP FE+HP FPQRTNTE +   S+    M VWERG+G T+A GTGACA LVAAVLTGR ++  +  + LPGG L I+
Sbjct:   62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGISRQSDQYRIHTLAGVMIPQLTPDGQ-IKVDMGEPRLLAGEIPTTLSASEEKVVEQPIE-VAGKTWDVTCVSMGNPHCITFV-----DDVAAIKLEEIGPQFEHHPKFPQRTNTEFIQVVSRDYVKMRVWERGAGITLACGTGACASLVAAVLTGRCDR--IATVELPGGSLEIE 257          
BLAST of Gcaud9999.t1 vs. uniprot
Match: A0A139X3T0_9CYAN (Diaminopimelate epimerase n=3 Tax=Nostocales TaxID=1161 RepID=A0A139X3T0_9CYAN)

HSP 1 Score: 182 bits (462), Expect = 7.040e-54
Identity = 102/207 (49.28%), Postives = 138/207 (66.67%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGL--AGRDWTFSYVSMGSLHAITFVAKDVYDDMDSL-LEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR++NSDG+EPEMCGNGIRCLA F +DL    R + KY + +  G + PQ+ S  + VKVDMG P +   ++PT L   AP++ + + + +  AG+ W  + VSMG+ H ITFV     +D+ ++ LEA+GP FENHPVFP+RTNTE +   S+    M VWERG+G T+A GTGACA LVA VLTGR ++     + LPGG L I+
Sbjct:   62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGTQRKSDKYAIHTLGGVMTPQLMSDGQ-VKVDMGLPRLLAGEIPTTL---APDDEKVIAQPIQVAGKTWDVTCVSMGNPHCITFV-----EDVAAIPLEAIGPQFENHPVFPRRTNTEFIEVVSRDYVKMRVWERGAGITLACGTGACASLVAGVLTGRCDRT--ATVELPGGPLYIE 257          
BLAST of Gcaud9999.t1 vs. uniprot
Match: K9Q529_9NOSO (Diaminopimelate epimerase n=8 Tax=Cyanobacteria TaxID=1117 RepID=K9Q529_9NOSO)

HSP 1 Score: 182 bits (461), Expect = 9.680e-54
Identity = 102/204 (50.00%), Postives = 131/204 (64.22%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR++NSDG+EPEMCGNGIRCLA F +DL    RT  KY + + AG + PQ+    + +KVDMG P +   ++PT L           L+ +AG+ W  + VSMG+ H ITFV KDV       LE +GP FE+HPVFPQRTNTE +   S+    M VWERG+G T+A GTGACA LVA VLTG+ ++  L  + LPGG L I+
Sbjct:   62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGISRTQDKYRIHTLAGTITPQLTPDGQ-IKVDMGLPRLLAGEIPTTLGAPDAKVINQPLE-VAGQTWEVTCVSMGNPHCITFV-KDV---ATIPLETIGPKFEHHPVFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAGVLTGKCDR--LATVELPGGCLEIE 257          
BLAST of Gcaud9999.t1 vs. uniprot
Match: DAPF_ACAM1 (Diaminopimelate epimerase n=4 Tax=Acaryochloris TaxID=155977 RepID=DAPF_ACAM1)

HSP 1 Score: 181 bits (460), Expect = 1.530e-53
Identity = 100/205 (48.78%), Postives = 131/205 (63.90%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTG-KYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSL-LEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTI 203
            MR+YNSDG+EPEMCGNGIRCLARF + L   P  T   Y + + AG + P +++    VKVDMG P + P+++PT L           L+ +AG+ W  + VSMG+ H ITFV     DD++++  + LGP FE+HPVFPQR NTE +         M+VWERG+G T+A GTGACAVLVA VLTG+++      I LPGG L I
Sbjct:   62 MRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADG-LVKVDMGPPFLVPQEIPTTLGEGTDPVVNQPLE-VAGQSWPVTCVSMGNPHCITFV-----DDLEAIDFQTLGPQFEHHPVFPQRINTEFIQVIRPDYLKMLVWERGAGPTLACGTGACAVLVAGVLTGKSQSQ--ATIELPGGPLQI 257          
BLAST of Gcaud9999.t1 vs. uniprot
Match: A0A7S3AC78_9RHOD (Diaminopimelate epimerase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC78_9RHOD)

HSP 1 Score: 182 bits (461), Expect = 2.180e-53
Identity = 94/204 (46.08%), Postives = 137/204 (67.16%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR+YNSDG+EPEMCGNGIRCLARFA ++    +T   Y +D+ AG +VP++    + V+VDMG P ++P ++P++L T  P+  ++    + G DW    +  G+ HA+ FV ++ +  +D  LE++GP +ENH  FP RTNTE +Y  S  + D +VWERG+G+T+A GTGACA +VA  LTGR  + V   ++LPGG L I+
Sbjct:   90 MRIYNSDGSEPEMCGNGIRCLARFAHEVLDSEKTV--YKIDTLAGLIVPEISG--DMVRVDMGEPELNPPKIPSLL-TPDPDT-KEATYHVDGTDWQVVPIGTGNPHAVVFVDQEQFRTLDENLESVGPLYENHETFPARTNTEFIYVKSPEEIDFLVWERGAGRTLACGTGACASVVACSLTGRTGRKVA--VNLPGGRLDIE 285          
BLAST of Gcaud9999.t1 vs. uniprot
Match: K9TDP4_9CYAN (Diaminopimelate epimerase n=2 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TDP4_9CYAN)

HSP 1 Score: 181 bits (458), Expect = 3.160e-53
Identity = 103/210 (49.05%), Postives = 136/210 (64.76%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRT----TGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQ-DVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSL-LEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR+YNSD +EPEMCGNGIRCLARF  DLGV  R+    TG+Y + + AG +   ++S  + V+VDMG P +   ++PT L    P E   +V   +AG+ W  + VSMG+ H ITFV     +D+D++ L  +GP FENHP FP+RTNTE +    ++   M VWERG+G T+A GTGACA LVA VLTGR ++     I LPGG L I+
Sbjct:   63 MRIYNSDASEPEMCGNGIRCLARFLVDLGVPTRSSATGTGEYRIQTLAGVMTLTLKSDGQ-VRVDMGLPRLLSSEIPTTL--CPPEEKAVNVPLSVAGKTWDVTCVSMGNPHCITFV-----EDVDAVDLAGIGPQFENHPAFPKRTNTEFIQVMGRSHLKMRVWERGAGATLACGTGACATLVAGVLTGRCDRQ--ATIELPGGPLHIE 262          
BLAST of Gcaud9999.t1 vs. uniprot
Match: A0A0D6KHQ1_9CYAN (Diaminopimelate epimerase n=38 Tax=Cyanobacteria TaxID=1117 RepID=A0A0D6KHQ1_9CYAN)

HSP 1 Score: 180 bits (457), Expect = 3.870e-53
Identity = 99/205 (48.29%), Postives = 136/205 (66.34%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSL-LEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR++NSDG+EPEMCGNGIRCL  F +DL    RT   Y + + AG + PQ+ +  + VKVDMG P +   ++PT L T+A  +  +    +AG+ W  + VSMG+ H ITFV     +D+ ++ LE++GP FE+HPVFPQRTNTE +   S+    M VWERG+G T+A GTGACA LVA VLTG+ ++  +  + LPGG L I+
Sbjct:   62 MRIFNSDGSEPEMCGNGIRCLGVFLADLEGEARTQDLYRIQTLAGVITPQLMADGQ-VKVDMGLPKLLASEIPTTL-TAADTKVINQPIEVAGKTWEVTCVSMGNPHCITFV-----EDVAAIPLESIGPQFEHHPVFPQRTNTEFIQVVSRDYLKMRVWERGAGITLACGTGACASLVAGVLTGKCDR--IATVELPGGPLQIE 257          
BLAST of Gcaud9999.t1 vs. uniprot
Match: K9UWZ6_9CYAN (Diaminopimelate epimerase n=1 Tax=Calothrix sp. PCC 6303 TaxID=1170562 RepID=K9UWZ6_9CYAN)

HSP 1 Score: 180 bits (457), Expect = 3.870e-53
Identity = 98/205 (47.80%), Postives = 134/205 (65.37%), Query Frame = 0
Query:    1 MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQMESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSYVSMGSLHAITFVAKDVYDDMDSL-LEALGPSFENHPVFPQRTNTELVYQYSKTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGDLTID 204
            MR++NSDG+EPEMCGNGIRCLA F +DL    RT+ KY + + AG + PQ+      ++VDMG P +   ++PT L T+     +  L+ +AG+ W  + VSMG+ H ITFV     DD+D+L L  +GP FE HPVFP++TNTE +    +    M VWERG+G T+A GTGACA LVA VLTG+ ++  +  + LPGG L I+
Sbjct:   62 MRIFNSDGSEPEMCGNGIRCLAAFLADLEGGNRTSDKYRIHTLAGVITPQLMPEG-LIRVDMGEPHLLAGEIPTTLATAEEKVVEQTLE-VAGKTWQVTCVSMGNPHCITFV-----DDVDALALAEIGPQFETHPVFPKKTNTEFIQVVERDYLKMRVWERGAGITLACGTGACASLVAGVLTGKCDR--IATVELPGGCLEIE 257          
The following BLAST results are available for this feature:
BLAST of Gcaud9999.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II36_9FLOR7.470e-10876.77Diaminopimelate epimerase n=1 Tax=Gracilariopsis c... [more]
R7QGK7_CHOCR2.130e-9065.20Diaminopimelate epimerase n=1 Tax=Chondrus crispus... [more]
A0A1Z4RF15_9CYAN3.420e-5448.29Diaminopimelate epimerase n=1 Tax=Calothrix sp. NI... [more]
A0A139X3T0_9CYAN7.040e-5449.28Diaminopimelate epimerase n=3 Tax=Nostocales TaxID... [more]
K9Q529_9NOSO9.680e-5450.00Diaminopimelate epimerase n=8 Tax=Cyanobacteria Ta... [more]
DAPF_ACAM11.530e-5348.78Diaminopimelate epimerase n=4 Tax=Acaryochloris Ta... [more]
A0A7S3AC78_9RHOD2.180e-5346.08Diaminopimelate epimerase n=2 Tax=Rhodosorus marin... [more]
K9TDP4_9CYAN3.160e-5349.05Diaminopimelate epimerase n=2 Tax=Oscillatoriaceae... [more]
A0A0D6KHQ1_9CYAN3.870e-5348.29Diaminopimelate epimerase n=38 Tax=Cyanobacteria T... [more]
K9UWZ6_9CYAN3.870e-5347.80Diaminopimelate epimerase n=1 Tax=Calothrix sp. PC... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001653Diaminopimelate epimerase, DapFPFAMPF01678DAP_epimerasecoord: 1..65
e-value: 2.0E-12
score: 47.3
coord: 100..203
e-value: 9.0E-16
score: 58.2
IPR001653Diaminopimelate epimerase, DapFTIGRFAMTIGR00652TIGR00652coord: 1..204
e-value: 7.2E-45
score: 151.5
IPR001653Diaminopimelate epimerase, DapFPANTHERPTHR31689DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 1..203
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 1..67
e-value: 1.8E-15
score: 58.8
NoneNo IPR availableGENE3D3.10.310.10Diaminopimelate Epimerase; Chain A, domain 1coord: 68..204
e-value: 8.5E-34
score: 118.6
NoneNo IPR availablePANTHERPTHR31689:SF0DIAMINOPIMELATE EPIMERASE, CHLOROPLASTICcoord: 1..203
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 92..203
NoneNo IPR availableSUPERFAMILY54506Diaminopimelate epimerase-likecoord: 1..73
IPR018510Diaminopimelate epimerase, active sitePROSITEPS01326DAP_EPIMERASEcoord: 5..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2723_length_4850_cov_4.584997contigNODE_2723_length_4850_cov_4.584997:110..724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9999.t1Gcaud9999.t1Gracilaria caudata M_176_S67 malemRNANODE_2723_length_4850_cov_4.584997 110..724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9999.t1 ID=Gcaud9999.t1|Name=Gcaud9999.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=205bp
MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQ
MESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSY
VSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYS
KTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGD
LTID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001653DAP_epimerase_DapF
IPR018510DAP_epimerase_AS