Gcaud9999.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9999.t1
Unique Name	Gcaud9999.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	205

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2723_length_4850_cov_4.584997	contig	NODE_2723_length_4850_cov_4.584997:110..724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.J34464.1.p
PFAMs	DAP_epimerase
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00302
KEGG ko	ko:K01778
KEGG Reaction	R02735
KEGG Pathway	ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG Module	M00016,M00525,M00527
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008837,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009089,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016853,GO:0016854,GO:0016855,GO:0019752,GO:0036361,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0047661,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	5.6e-55
EggNOG OGs	COG0253@1\|root,2QQKJ@2759\|Eukaryota,37QZX@33090\|Viridiplantae,3GADP@35493\|Streptophyta,3KWGE@4447\|Liliopsida,3IDRY@38820\|Poales
EC	5.1.1.7
Description	Diaminopimelate epimerase
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9999	Gcaud9999	Gracilaria caudata M_176_S67 male	gene	NODE_2723_length_4850_cov_4.584997 110..724 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9999.t1.start1	Gcaud9999.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2723_length_4850_cov_4.584997 110..112 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9999.t1.CDS1	Gcaud9999.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2723_length_4850_cov_4.584997 110..724 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9999.t1.exon1	Gcaud9999.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2723_length_4850_cov_4.584997 110..724 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9999.t1.stop1	Gcaud9999.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2723_length_4850_cov_4.584997 722..724 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9999.t1	Gcaud9999.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2723_length_4850_cov_4.584997 110..724 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2723_length_4850_cov_4.584997:110..724+
coding sequence from alignment at NODE_2723_length_4850_cov_4.584997:110..724+

mRNA sequence

>Gcaud9999.t1 ID=Gcaud9999.t1|Name=Gcaud9999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=205bp
MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQ
MESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSY
VSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYS
KTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGD
LTID*

spliced messenger RNA

>Gcaud9999.t1 ID=Gcaud9999.t1|Name=Gcaud9999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=615bp|location=Sequence derived from alignment at NODE_2723_length_4850_cov_4.584997:110..724+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTTTACAACTCTGACGGCACTGAACCAGAGATGTGTGGAAACGG
AATTCGTTGTTTAGCGCGTTTTGCATCTGACTTGGGTGTCCATCCGCGCA
CCACTGGGAAGTATGTAGTGGACAGTGGCGCTGGGGAAGTCGTTCCGCAG
ATGGAGAGTGGATCGGAGACGGTGAAGGTTGATATGGGAGCTCCGATTGT
TGACCCCAAACAGGTTCCAACCATGTTGAATACTTCTGCGCCAAACGAAT
ATCAAGACGTTTTGAAAGGTCTAGCGGGTCGAGATTGGACGTTTTCATAT
GTGTCGATGGGGAGTCTCCACGCAATCACGTTCGTTGCCAAAGACGTTTA
TGACGATATGGATTCTCTTCTTGAAGCACTTGGTCCTAGCTTTGAGAACC
ACCCCGTCTTTCCACAAAGAACAAACACTGAGTTGGTATATCAATACAGC
AAAACAGATTTTGATATGGTTGTATGGGAACGCGGGTCTGGAAAGACAAT
GGCCCGCGGAACAGGCGCTTGTGCCGTACTCGTCGCCGCCGTGCTAACTG
GTCGAGCAGAAAAAGATGTTCTGACTGTTATCCATTTACCAGGCGGTGAT
CTAACTATTGATTAG

protein sequence of Gcaud9999.t1

>Gcaud9999.t1 ID=Gcaud9999.t1|Name=Gcaud9999.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=205bp
MRLYNSDGTEPEMCGNGIRCLARFASDLGVHPRTTGKYVVDSGAGEVVPQ
MESGSETVKVDMGAPIVDPKQVPTMLNTSAPNEYQDVLKGLAGRDWTFSY
VSMGSLHAITFVAKDVYDDMDSLLEALGPSFENHPVFPQRTNTELVYQYS
KTDFDMVVWERGSGKTMARGTGACAVLVAAVLTGRAEKDVLTVIHLPGGD
LTID*

mRNA from alignment at NODE_2723_length_4850_cov_4.584997:110..724+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9999.t1 ID=Gcaud9999.t1|Name=Gcaud9999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=615bp|location=Sequence derived from alignment at NODE_2723_length_4850_cov_4.584997:110..724+ (Gracilaria caudata M_176_S67 male)
ATGAGACTTTACAACTCTGACGGCACTGAACCAGAGATGTGTGGAAACGG
AATTCGTTGTTTAGCGCGTTTTGCATCTGACTTGGGTGTCCATCCGCGCA
CCACTGGGAAGTATGTAGTGGACAGTGGCGCTGGGGAAGTCGTTCCGCAG
ATGGAGAGTGGATCGGAGACGGTGAAGGTTGATATGGGAGCTCCGATTGT
TGACCCCAAACAGGTTCCAACCATGTTGAATACTTCTGCGCCAAACGAAT
ATCAAGACGTTTTGAAAGGTCTAGCGGGTCGAGATTGGACGTTTTCATAT
GTGTCGATGGGGAGTCTCCACGCAATCACGTTCGTTGCCAAAGACGTTTA
TGACGATATGGATTCTCTTCTTGAAGCACTTGGTCCTAGCTTTGAGAACC
ACCCCGTCTTTCCACAAAGAACAAACACTGAGTTGGTATATCAATACAGC
AAAACAGATTTTGATATGGTTGTATGGGAACGCGGGTCTGGAAAGACAAT
GGCCCGCGGAACAGGCGCTTGTGCCGTACTCGTCGCCGCCGTGCTAACTG
GTCGAGCAGAAAAAGATGTTCTGACTGTTATCCATTTACCAGGCGGTGAT
CTAACTATTGATTAG

Coding sequence (CDS) from alignment at NODE_2723_length_4850_cov_4.584997:110..724+

>Gcaud9999.t1 ID=Gcaud9999.t1|Name=Gcaud9999.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=615bp|location=Sequence derived from alignment at NODE_2723_length_4850_cov_4.584997:110..724+ (Gracilaria caudata M_176_S67 male)
ATGAGACTTTACAACTCTGACGGCACTGAACCAGAGATGTGTGGAAACGG
AATTCGTTGTTTAGCGCGTTTTGCATCTGACTTGGGTGTCCATCCGCGCA
CCACTGGGAAGTATGTAGTGGACAGTGGCGCTGGGGAAGTCGTTCCGCAG
ATGGAGAGTGGATCGGAGACGGTGAAGGTTGATATGGGAGCTCCGATTGT
TGACCCCAAACAGGTTCCAACCATGTTGAATACTTCTGCGCCAAACGAAT
ATCAAGACGTTTTGAAAGGTCTAGCGGGTCGAGATTGGACGTTTTCATAT
GTGTCGATGGGGAGTCTCCACGCAATCACGTTCGTTGCCAAAGACGTTTA
TGACGATATGGATTCTCTTCTTGAAGCACTTGGTCCTAGCTTTGAGAACC
ACCCCGTCTTTCCACAAAGAACAAACACTGAGTTGGTATATCAATACAGC
AAAACAGATTTTGATATGGTTGTATGGGAACGCGGGTCTGGAAAGACAAT
GGCCCGCGGAACAGGCGCTTGTGCCGTACTCGTCGCCGCCGTGCTAACTG
GTCGAGCAGAAAAAGATGTTCTGACTGTTATCCATTTACCAGGCGGTGAT
CTAACTATTGATTAG