Gcaud9996.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9996.t1
Unique Name	Gcaud9996.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	460

Homology

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BLAST of Gcaud9996.t1 vs. uniprot
Match: A0A2V3IRZ4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRZ4_9FLOR)

HSP 1 Score: 560 bits (1444), Expect = 3.540e-178
Identity = 278/423 (65.72%), Postives = 341/423 (80.61%), Query Frame = 0

Query:   26 LFTLCDSYTEVFSIITDDDGARYYAGNIDSNFFMAKRSSGCSFEWTSSAGSATGDDDNDENREIFYGSVVGSDGFIYAAGTTKGNFSSPEDEVPTLDAAVLVYDTSDGSLVRQAQYDVDNGLDDVAGAVAQKPDGTILVAVYGSPPNAQNTAVYSTKVLEISPDSLELVRSHDVQVQTSGTFASITGGPTILHMVYVESQEAVVAVGQILGRGLLFMFSLSTGTIVTQTEWGSIIGNMQIGGLATDDNGAFFVTGSSSENILENADLQNVVTSELHAYVIRYDNLLLAEPEVTWVRQLVGSGSSQSGDDVSIDPSTGAVVVIGSFHADFVVTDEQNGSTYELSTITTDGLTDIFVWYLDAESGSFTDLR-RSFASTASEDRGNVVEVSSSGQLEIGGVINDGTDDSALACDEQIV----SPSP 443
            LF  CDSYTEVFSI  + D + YY GN DSNFF+AKR+S CS +WTS+ GSATGDDDNDENREIFY  ++GSDG +YAAGTTKGNFS P +EVPTLDAA++VY+ +DGSLVRQAQYD+++GLD+VA A+A+K DG +LVAVYGS PN QNTA++ T+++E+S D+LE++    V+V TS +  SIT GP I   VYVES   + AVGQILGRG+LF + L++GT+++Q+EWG+ +GNMQ+GGL  DDNG F+VTGSSS N+L N DL+    SE H YVIR+DNLL  +P  TWVRQL GSGSSQSG+DV+IDP TG VVV+GSF ADF VTD Q   +Y+LSTI+ DGLTDIFVWYLD+E+G F+DLR  SFASTASEDR NVVEV S+ QLEIGGVINDGTDD+ALACD++ +    SPSP
Sbjct:   27 LFATCDSYTEVFSIAKESDDSTYYVGNRDSNFFIAKRNSQCSPQWTSTEGSATGDDDNDENREIFYDVIIGSDGLLYAAGTTKGNFSFPANEVPTLDAAIVVYNNTDGSLVRQAQYDIESGLDNVARAIAEKADGNLLVAVYGSTPNVQNTAIFETRIIEVSHDTLEVMNISSVEVTTSDSIFSITAGPRIWDFVYVESLGVIAAVGQILGRGMLFTYDLTSGTVISQSEWGNTLGNMQVGGLVVDDNGVFYVTGSSSSNVLSNVDLEQATNSEYHTYVIRFDNLLSGQPVPTWVRQLAGSGSSQSGNDVTIDPVTGEVVVVGSFDADFSVTDSQTAKSYDLSTISKDGLTDIFVWYLDSETGDFSDLRISSFASTASEDRANVVEVLSNRQLEIGGVINDGTDDNALACDDEHLTASSSPSP 449

The following BLAST results are available for this feature:

BLAST of Gcaud9996.t1 vs. uniprot

BLAST of Gcaud9996.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IRZ4_9FLOR	3.540e-178	65.72	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 28..32
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 16..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..459
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..15
None	No IPR available	SUPERFAMILY	82171	DPP6 N-terminal domain-like	coord: 120..416

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_132_length_45408_cov_4.668756	contig	NODE_132_length_45408_cov_4.668756:36593..38031 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1	Gcaud9996.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_132_length_45408_cov_4.668756 36593..38031 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9996.t1 ID=Gcaud9996.t1|Name=Gcaud9996.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=460bp
MNMAACMPCPGFAAKSLWVTTVFFILFTLCDSYTEVFSIITDDDGARYYA
GNIDSNFFMAKRSSGCSFEWTSSAGSATGDDDNDENREIFYGSVVGSDGF
IYAAGTTKGNFSSPEDEVPTLDAAVLVYDTSDGSLVRQAQYDVDNGLDDV
AGAVAQKPDGTILVAVYGSPPNAQNTAVYSTKVLEISPDSLELVRSHDVQ
VQTSGTFASITGGPTILHMVYVESQEAVVAVGQILGRGLLFMFSLSTGTI
VTQTEWGSIIGNMQIGGLATDDNGAFFVTGSSSENILENADLQNVVTSEL
HAYVIRYDNLLLAEPEVTWVRQLVGSGSSQSGDDVSIDPSTGAVVVIGSF
HADFVVTDEQNGSTYELSTITTDGLTDIFVWYLDAESGSFTDLRRSFAST
ASEDRGNVVEVSSSGQLEIGGVINDGTDDSALACDEQIVSPSPIRIAKPN
IKCYSVGPK*