Gcaud9996.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9996.t1
Unique Name	Gcaud9996.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	460

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_132_length_45408_cov_4.668756	contig	NODE_132_length_45408_cov_4.668756:36593..38031 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9996	Gcaud9996	Gracilaria caudata M_176_S67 male	gene	NODE_132_length_45408_cov_4.668756 36593..38031 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1	Gcaud9996.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_132_length_45408_cov_4.668756 36593..38031 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1.stop1	Gcaud9996.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_132_length_45408_cov_4.668756 36593..36595 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1.CDS1	Gcaud9996.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_132_length_45408_cov_4.668756 36593..36642 -
Gcaud9996.t1.CDS2	Gcaud9996.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_132_length_45408_cov_4.668756 36702..38031 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1.exon1	Gcaud9996.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_132_length_45408_cov_4.668756 36593..36642 -
Gcaud9996.t1.exon2	Gcaud9996.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_132_length_45408_cov_4.668756 36702..38031 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1.intron1	Gcaud9996.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_132_length_45408_cov_4.668756 36643..36701 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9996.t1.start1	Gcaud9996.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_132_length_45408_cov_4.668756 38029..38031 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_132_length_45408_cov_4.668756:36593..38031-
coding sequence from alignment at NODE_132_length_45408_cov_4.668756:36593..38031-

mRNA sequence

>Gcaud9996.t1 ID=Gcaud9996.t1|Name=Gcaud9996.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=460bp
MNMAACMPCPGFAAKSLWVTTVFFILFTLCDSYTEVFSIITDDDGARYYA
GNIDSNFFMAKRSSGCSFEWTSSAGSATGDDDNDENREIFYGSVVGSDGF
IYAAGTTKGNFSSPEDEVPTLDAAVLVYDTSDGSLVRQAQYDVDNGLDDV
AGAVAQKPDGTILVAVYGSPPNAQNTAVYSTKVLEISPDSLELVRSHDVQ
VQTSGTFASITGGPTILHMVYVESQEAVVAVGQILGRGLLFMFSLSTGTI
VTQTEWGSIIGNMQIGGLATDDNGAFFVTGSSSENILENADLQNVVTSEL
HAYVIRYDNLLLAEPEVTWVRQLVGSGSSQSGDDVSIDPSTGAVVVIGSF
HADFVVTDEQNGSTYELSTITTDGLTDIFVWYLDAESGSFTDLRRSFAST
ASEDRGNVVEVSSSGQLEIGGVINDGTDDSALACDEQIVSPSPIRIAKPN
IKCYSVGPK*

spliced messenger RNA

>Gcaud9996.t1 ID=Gcaud9996.t1|Name=Gcaud9996.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_132_length_45408_cov_4.668756:36593..38031- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATGGCTGCTTGCATGCCTTGTCCAGGCTTTGCAGCGAAGAGTCT
GTGGGTGACAACAGTTTTTTTCATCTTGTTTACCCTCTGTGATTCTTACA
CTGAGGTATTTTCAATCATCACCGATGACGATGGAGCCCGCTACTACGCG
GGCAATATCGATTCCAACTTTTTTATGGCAAAGAGGAGCTCCGGCTGCTC
GTTCGAATGGACAAGCTCAGCGGGATCGGCAACTGGTGACGACGACAACG
ATGAGAACAGGGAAATCTTCTACGGCTCTGTCGTGGGATCCGATGGCTTC
ATATACGCCGCTGGAACGACGAAAGGTAACTTTTCGTCCCCGGAAGACGA
GGTTCCAACGTTGGATGCCGCCGTTCTCGTATATGATACATCAGATGGGA
GCTTGGTGAGACAAGCGCAATACGACGTCGACAATGGGCTTGACGACGTG
GCAGGCGCCGTAGCTCAGAAACCCGATGGGACAATCTTGGTAGCGGTCTA
CGGTTCCCCACCCAATGCCCAGAACACTGCAGTGTATTCGACCAAGGTTC
TAGAGATATCACCGGACTCTCTGGAGCTGGTGCGGAGCCACGACGTTCAG
GTGCAAACCTCTGGAACGTTTGCTTCAATCACTGGTGGGCCTACAATCTT
GCACATGGTATATGTCGAGAGCCAAGAAGCTGTGGTGGCCGTTGGTCAGA
TTCTTGGTAGAGGACTGTTGTTTATGTTCAGCCTTTCAACTGGTACCATC
GTAACTCAGACTGAGTGGGGCAGCATTATTGGGAATATGCAAATTGGAGG
CTTGGCTACGGACGACAACGGTGCATTCTTTGTGACGGGCTCCAGCAGTG
AAAACATACTTGAAAACGCAGACCTGCAAAATGTGGTGACATCGGAACTT
CATGCTTATGTGATTCGGTACGACAATCTACTGTTGGCAGAACCAGAGGT
CACCTGGGTGAGGCAATTGGTTGGGTCGGGCAGCAGCCAGTCTGGAGATG
ACGTTTCCATAGATCCGAGTACTGGAGCTGTTGTGGTGATCGGATCTTTC
CACGCTGACTTTGTCGTGACGGACGAACAAAATGGGAGTACGTACGAGCT
GAGCACGATCACGACCGATGGGCTCACTGATATCTTTGTGTGGTATCTTG
ATGCGGAGAGTGGCTCTTTCACGGATTTGCGGCGGTCTTTTGCAAGTACG
GCTTCAGAAGATCGAGGTAATGTTGTTGAAGTGTCATCTTCCGGCCAACT
GGAGATTGGAGGTGTAATCAATGACGGGACTGATGACAGCGCACTTGCTT
GTGACGAACAAATTGTGAGTCCTTCACCAATTCGCATCGCCAAGCCCAAC
ATCAAGTGTTATAGCGTCGGACCCAAGTGA

protein sequence of Gcaud9996.t1

>Gcaud9996.t1 ID=Gcaud9996.t1|Name=Gcaud9996.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=460bp
MNMAACMPCPGFAAKSLWVTTVFFILFTLCDSYTEVFSIITDDDGARYYA
GNIDSNFFMAKRSSGCSFEWTSSAGSATGDDDNDENREIFYGSVVGSDGF
IYAAGTTKGNFSSPEDEVPTLDAAVLVYDTSDGSLVRQAQYDVDNGLDDV
AGAVAQKPDGTILVAVYGSPPNAQNTAVYSTKVLEISPDSLELVRSHDVQ
VQTSGTFASITGGPTILHMVYVESQEAVVAVGQILGRGLLFMFSLSTGTI
VTQTEWGSIIGNMQIGGLATDDNGAFFVTGSSSENILENADLQNVVTSEL
HAYVIRYDNLLLAEPEVTWVRQLVGSGSSQSGDDVSIDPSTGAVVVIGSF
HADFVVTDEQNGSTYELSTITTDGLTDIFVWYLDAESGSFTDLRRSFAST
ASEDRGNVVEVSSSGQLEIGGVINDGTDDSALACDEQIVSPSPIRIAKPN
IKCYSVGPK*

mRNA from alignment at NODE_132_length_45408_cov_4.668756:36593..38031-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9996.t1 ID=Gcaud9996.t1|Name=Gcaud9996.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1439bp|location=Sequence derived from alignment at NODE_132_length_45408_cov_4.668756:36593..38031- (Gracilaria caudata M_176_S67 male)
ATGAACATGGCTGCTTGCATGCCTTGTCCAGGCTTTGCAGCGAAGAGTCT
GTGGGTGACAACAGTTTTTTTCATCTTGTTTACCCTCTGTGATTCTTACA
CTGAGGTATTTTCAATCATCACCGATGACGATGGAGCCCGCTACTACGCG
GGCAATATCGATTCCAACTTTTTTATGGCAAAGAGGAGCTCCGGCTGCTC
GTTCGAATGGACAAGCTCAGCGGGATCGGCAACTGGTGACGACGACAACG
ATGAGAACAGGGAAATCTTCTACGGCTCTGTCGTGGGATCCGATGGCTTC
ATATACGCCGCTGGAACGACGAAAGGTAACTTTTCGTCCCCGGAAGACGA
GGTTCCAACGTTGGATGCCGCCGTTCTCGTATATGATACATCAGATGGGA
GCTTGGTGAGACAAGCGCAATACGACGTCGACAATGGGCTTGACGACGTG
GCAGGCGCCGTAGCTCAGAAACCCGATGGGACAATCTTGGTAGCGGTCTA
CGGTTCCCCACCCAATGCCCAGAACACTGCAGTGTATTCGACCAAGGTTC
TAGAGATATCACCGGACTCTCTGGAGCTGGTGCGGAGCCACGACGTTCAG
GTGCAAACCTCTGGAACGTTTGCTTCAATCACTGGTGGGCCTACAATCTT
GCACATGGTATATGTCGAGAGCCAAGAAGCTGTGGTGGCCGTTGGTCAGA
TTCTTGGTAGAGGACTGTTGTTTATGTTCAGCCTTTCAACTGGTACCATC
GTAACTCAGACTGAGTGGGGCAGCATTATTGGGAATATGCAAATTGGAGG
CTTGGCTACGGACGACAACGGTGCATTCTTTGTGACGGGCTCCAGCAGTG
AAAACATACTTGAAAACGCAGACCTGCAAAATGTGGTGACATCGGAACTT
CATGCTTATGTGATTCGGTACGACAATCTACTGTTGGCAGAACCAGAGGT
CACCTGGGTGAGGCAATTGGTTGGGTCGGGCAGCAGCCAGTCTGGAGATG
ACGTTTCCATAGATCCGAGTACTGGAGCTGTTGTGGTGATCGGATCTTTC
CACGCTGACTTTGTCGTGACGGACGAACAAAATGGGAGTACGTACGAGCT
GAGCACGATCACGACCGATGGGCTCACTGATATCTTTGTGTGGTATCTTG
ATGCGGAGAGTGGCTCTTTCACGGATTTGCGGCGGTCTTTTGCAAGTACG
GCTTCAGAAGATCGAGGTAATGTTGTTGAAGTGTCATCTTCCGGCCAACT
GGAGATTGGAGGTGTAATCAATGACGGGACTGATGACAGCGCACTTGCTT
GTGACGAACAAATTGTGAGTCCTTCACCAAGTCCCTCCCCCCGTGTATCA
AGTTCAATGTCCGTCGGGCCTTCGTCAAACCCCGTGCAGTTCGCATCGCC
AAGCCCAACATCAAGTGTTATAGCGTCGGACCCAAGTGA

Coding sequence (CDS) from alignment at NODE_132_length_45408_cov_4.668756:36593..38031-

>Gcaud9996.t1 ID=Gcaud9996.t1|Name=Gcaud9996.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1380bp|location=Sequence derived from alignment at NODE_132_length_45408_cov_4.668756:36593..38031- (Gracilaria caudata M_176_S67 male)
ATGAACATGGCTGCTTGCATGCCTTGTCCAGGCTTTGCAGCGAAGAGTCT
GTGGGTGACAACAGTTTTTTTCATCTTGTTTACCCTCTGTGATTCTTACA
CTGAGGTATTTTCAATCATCACCGATGACGATGGAGCCCGCTACTACGCG
GGCAATATCGATTCCAACTTTTTTATGGCAAAGAGGAGCTCCGGCTGCTC
GTTCGAATGGACAAGCTCAGCGGGATCGGCAACTGGTGACGACGACAACG
ATGAGAACAGGGAAATCTTCTACGGCTCTGTCGTGGGATCCGATGGCTTC
ATATACGCCGCTGGAACGACGAAAGGTAACTTTTCGTCCCCGGAAGACGA
GGTTCCAACGTTGGATGCCGCCGTTCTCGTATATGATACATCAGATGGGA
GCTTGGTGAGACAAGCGCAATACGACGTCGACAATGGGCTTGACGACGTG
GCAGGCGCCGTAGCTCAGAAACCCGATGGGACAATCTTGGTAGCGGTCTA
CGGTTCCCCACCCAATGCCCAGAACACTGCAGTGTATTCGACCAAGGTTC
TAGAGATATCACCGGACTCTCTGGAGCTGGTGCGGAGCCACGACGTTCAG
GTGCAAACCTCTGGAACGTTTGCTTCAATCACTGGTGGGCCTACAATCTT
GCACATGGTATATGTCGAGAGCCAAGAAGCTGTGGTGGCCGTTGGTCAGA
TTCTTGGTAGAGGACTGTTGTTTATGTTCAGCCTTTCAACTGGTACCATC
GTAACTCAGACTGAGTGGGGCAGCATTATTGGGAATATGCAAATTGGAGG
CTTGGCTACGGACGACAACGGTGCATTCTTTGTGACGGGCTCCAGCAGTG
AAAACATACTTGAAAACGCAGACCTGCAAAATGTGGTGACATCGGAACTT
CATGCTTATGTGATTCGGTACGACAATCTACTGTTGGCAGAACCAGAGGT
CACCTGGGTGAGGCAATTGGTTGGGTCGGGCAGCAGCCAGTCTGGAGATG
ACGTTTCCATAGATCCGAGTACTGGAGCTGTTGTGGTGATCGGATCTTTC
CACGCTGACTTTGTCGTGACGGACGAACAAAATGGGAGTACGTACGAGCT
GAGCACGATCACGACCGATGGGCTCACTGATATCTTTGTGTGGTATCTTG
ATGCGGAGAGTGGCTCTTTCACGGATTTGCGGCGGTCTTTTGCAAGTACG
GCTTCAGAAGATCGAGGTAATGTTGTTGAAGTGTCATCTTCCGGCCAACT
GGAGATTGGAGGTGTAATCAATGACGGGACTGATGACAGCGCACTTGCTT
GTGACGAACAAATTGTGAGTCCTTCACCAATTCGCATCGCCAAGCCCAAC
ATCAAGTGTTATAGCGTCGGACCCAAGTGA