Gcaud9952.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9952.t1
Unique NameGcaud9952.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Homology
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BLAST of Gcaud9952.t1 vs. uniprot
Match: A0A2V3IQP7_9FLOR (HTH myb-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQP7_9FLOR)

HSP 1 Score: 236 bits (602), Expect = 1.040e-71
Identity = 182/377 (48.28%), Postives = 231/377 (61.27%), Query Frame = 0 
Query:    1 MDTTQYTRFLASPIAVV-ASAELRANAAANASRIRELENMLHTKRREIERLHSAKRQRSSSVSPPVSMTT---TPVTSPRTIDYIKQSP-REMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAARAQQEAVRAFATAQLNAXXXXXXXXXXANHSLGMPVSAKGREMRKSEPRLATIMPADFRSTPGVHVR-SDGVAPFGCNLSLGGTPRMSDWTSQPLDEAARQYTPPEWRFNESAEYVAVKTE--ATEEKAVAGEGPDXXXXXXXXXXXXXXXXXXXTMESGSNDESTECAFFGDDVEEHDGLADMIEM----GAEEMSLDSTLL-QDGEDWQLTDSLGSELLPDTLLG 364
            M+ +Q++  +  P AVV A+A LRA+A ANA+RIR+LE+M+ ++RRE+ RL   KR RSS+  PP S  T   +PV+SPRTIDY+  SP REMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAA+AQQEAVRAFATAQLNAXXXXXXXXX A  S G+PV    +  R++E +LA IMPA  RS  GV  + S+    F  ++     P ++     P +   +Q            E   VKTE  A  + ++  EG                        +G++    +  F G D E  D L+  +E+    G +++S+  +L  +D   W   D  G +LL D LLG
Sbjct:    1 MEVSQHSPLVPDPTAVVTATAHLRAHAEANATRIRQLESMIRSERRELARLLGTKRTRSST--PPPSQCTPSASPVSSPRTIDYVNHSPTREMAARGSHWSFAEKARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAAKAQQEAVRAFATAQLNAXXXXXXXXX-AKQSFGLPVHTV-QHKRRAEHKLAHIMPAGMRSAGGVSAQQSEPFNAFPMHMEAAVAPLLA-----PAEAPGKQ------------EQTVVKTEDEAQSDASIQSEGDGMSTRTDG------------VSSAGADYALFDTQFAGGDFE--DMLSIPMELDSSVGTDDVSVQCSLFDEDDSTWNAADRQGDDLLGDRLLG 342
The following BLAST results are available for this feature:
BLAST of Gcaud9952.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQP7_9FLOR1.040e-7148.28HTH myb-type domain-containing protein n=1 Tax=Gra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableGENE3D1.10.10.60coord: 93..143
e-value: 5.0E-8
score: 35.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 294..308
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..319
IPR001005SANT/Myb domainSMARTSM00717santcoord: 91..140
e-value: 2.0E-6
score: 37.3
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 95..137
e-value: 9.92947E-7
score: 43.333
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 94..137
e-value: 6.2E-6
score: 26.3
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 87..142
score: 10.527182
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 94..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_556_length_22202_cov_4.379087contigNODE_556_length_22202_cov_4.379087:4..1107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9952.t1Gcaud9952.t1Gracilaria caudata M_176_S67 malemRNANODE_556_length_22202_cov_4.379087 4..1107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9952.t1 ID=Gcaud9952.t1|Name=Gcaud9952.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MDTTQYTRFLASPIAVVASAELRANAAANASRIRELENMLHTKRREIERL
HSAKRQRSSSVSPPVSMTTTPVTSPRTIDYIKQSPREMAARGSHWSFAEK
ARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAARAQQE
AVRAFATAQLNAAAAAAAAAAAANHSLGMPVSAKGREMRKSEPRLATIMP
ADFRSTPGVHVRSDGVAPFGCNLSLGGTPRMSDWTSQPLDEAARQYTPPE
WRFNESAEYVAVKTEATEEKAVAGEGPDADADADADADADGAGTETSTME
SGSNDESTECAFFGDDVEEHDGLADMIEMGAEEMSLDSTLLQDGEDWQLT
DSLGSELLPDTLLGSPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf