Gcaud9952.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9952.t1
Unique NameGcaud9952.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_556_length_22202_cov_4.379087contigNODE_556_length_22202_cov_4.379087:4..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9952Gcaud9952Gracilaria caudata M_176_S67 malegeneNODE_556_length_22202_cov_4.379087 4..1107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9952.t1.start1Gcaud9952.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_556_length_22202_cov_4.379087 4..6 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9952.t1.CDS1Gcaud9952.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_556_length_22202_cov_4.379087 4..1107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9952.t1.exon1Gcaud9952.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_556_length_22202_cov_4.379087 4..1107 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9952.t1.stop1Gcaud9952.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_556_length_22202_cov_4.379087 1105..1107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9952.t1Gcaud9952.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_556_length_22202_cov_4.379087 4..1107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9952.t1 ID=Gcaud9952.t1|Name=Gcaud9952.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MDTTQYTRFLASPIAVVASAELRANAAANASRIRELENMLHTKRREIERL
HSAKRQRSSSVSPPVSMTTTPVTSPRTIDYIKQSPREMAARGSHWSFAEK
ARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAARAQQE
AVRAFATAQLNAAAAAAAAAAAANHSLGMPVSAKGREMRKSEPRLATIMP
ADFRSTPGVHVRSDGVAPFGCNLSLGGTPRMSDWTSQPLDEAARQYTPPE
WRFNESAEYVAVKTEATEEKAVAGEGPDADADADADADADGAGTETSTME
SGSNDESTECAFFGDDVEEHDGLADMIEMGAEEMSLDSTLLQDGEDWQLT
DSLGSELLPDTLLGSPL*
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spliced messenger RNA

>Gcaud9952.t1 ID=Gcaud9952.t1|Name=Gcaud9952.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_556_length_22202_cov_4.379087:4..1107+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCACACAATACACTCGCTTCCTAGCGAGTCCGATCGCCGTCGT
GGCGTCGGCCGAGCTCCGCGCCAATGCCGCCGCCAACGCGAGCCGCATCC
GAGAGCTCGAGAACATGTTGCATACCAAGCGTCGCGAGATAGAGCGCTTA
CACAGCGCCAAGCGCCAACGCAGCAGCAGTGTATCACCACCGGTCAGCAT
GACCACCACACCGGTCACCTCGCCCCGAACCATCGACTACATCAAGCAGA
GTCCCCGTGAAATGGCCGCAAGGGGCTCGCACTGGAGTTTTGCAGAGAAG
GCGCGCTTCGAAGCAGCGCTGCATCGATACGGCCCGTTTGCCTGGGATCA
CATCATCCGCGCCGTCGGAACACGCTCCGAGAAGCAAGTCAAGGCGTACG
CCGCGCGGTATAGAAGGAGGAAGAAGCTGGCAGCAAGGGCGCAACAAGAG
GCTGTTCGCGCGTTTGCAACCGCTCAACTCAAtgctgcggcggctgctgc
cgccgctgctgccgccgcCAACCATTCGCTTGGCATGCCTGTTAGCGCAA
AGGGCCGTGAGATGAGAAAATCGGAACCTCGATTGGCCACCATCATGCCC
GCTGATTTTCGCTCCACACCTGGCGTGCATGTTCGCTCCGACGGAGTGGC
GCCGTTCGGATGCAACTTGAGCTTGGGCGGTACACCTCGCATGAGCGATT
GGACGTCGCAGCCTTTGGATGAAGCGGCACGCCAATACACGCCGCCCGAG
TGGCGCTTCAATGAGAGCGCGGAGTACGTGGCCGTGAAGACAGAGGCGAC
GGAAGAGAAGGCGGTGGCGGGGGAGGGGCcggacgcagatgcggacgcgg
atgcggacgcggacgcggacgGAGCCGGCACCGAGACGAGTACGATGGAG
AGCGGAAGCAACGATGAGAGCACGGAGTGCGCATTTTTCGGCGACGACGT
GGAGGAACACGACGGATTGGCGGACATGATCGAGATGGGCGCGGAGGAGA
TGTCGCTCGACAGCACACTGCTGCAGGATGGCGAGGACTGGCAACTGACT
GACAGTTTGGGCAGCGAGCTGCTACCGGACACGCTGCTGGGCAGCCCGCT
GTGA
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protein sequence of Gcaud9952.t1

>Gcaud9952.t1 ID=Gcaud9952.t1|Name=Gcaud9952.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MDTTQYTRFLASPIAVVASAELRANAAANASRIRELENMLHTKRREIERL
HSAKRQRSSSVSPPVSMTTTPVTSPRTIDYIKQSPREMAARGSHWSFAEK
ARFEAALHRYGPFAWDHIIRAVGTRSEKQVKAYAARYRRRKKLAARAQQE
AVRAFATAQLNAAAAAAAAAAAANHSLGMPVSAKGREMRKSEPRLATIMP
ADFRSTPGVHVRSDGVAPFGCNLSLGGTPRMSDWTSQPLDEAARQYTPPE
WRFNESAEYVAVKTEATEEKAVAGEGPDADADADADADADGAGTETSTME
SGSNDESTECAFFGDDVEEHDGLADMIEMGAEEMSLDSTLLQDGEDWQLT
DSLGSELLPDTLLGSPL*
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mRNA from alignment at NODE_556_length_22202_cov_4.379087:4..1107+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9952.t1 ID=Gcaud9952.t1|Name=Gcaud9952.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_556_length_22202_cov_4.379087:4..1107+ (Gracilaria caudata M_176_S67 male)
ATGGATACCACACAATACACTCGCTTCCTAGCGAGTCCGATCGCCGTCGT
GGCGTCGGCCGAGCTCCGCGCCAATGCCGCCGCCAACGCGAGCCGCATCC
GAGAGCTCGAGAACATGTTGCATACCAAGCGTCGCGAGATAGAGCGCTTA
CACAGCGCCAAGCGCCAACGCAGCAGCAGTGTATCACCACCGGTCAGCAT
GACCACCACACCGGTCACCTCGCCCCGAACCATCGACTACATCAAGCAGA
GTCCCCGTGAAATGGCCGCAAGGGGCTCGCACTGGAGTTTTGCAGAGAAG
GCGCGCTTCGAAGCAGCGCTGCATCGATACGGCCCGTTTGCCTGGGATCA
CATCATCCGCGCCGTCGGAACACGCTCCGAGAAGCAAGTCAAGGCGTACG
CCGCGCGGTATAGAAGGAGGAAGAAGCTGGCAGCAAGGGCGCAACAAGAG
GCTGTTCGCGCGTTTGCAACCGCTCAACTCAAtgctgcggcggctgctgc
cgccgctgctgccgccgcCAACCATTCGCTTGGCATGCCTGTTAGCGCAA
AGGGCCGTGAGATGAGAAAATCGGAACCTCGATTGGCCACCATCATGCCC
GCTGATTTTCGCTCCACACCTGGCGTGCATGTTCGCTCCGACGGAGTGGC
GCCGTTCGGATGCAACTTGAGCTTGGGCGGTACACCTCGCATGAGCGATT
GGACGTCGCAGCCTTTGGATGAAGCGGCACGCCAATACACGCCGCCCGAG
TGGCGCTTCAATGAGAGCGCGGAGTACGTGGCCGTGAAGACAGAGGCGAC
GGAAGAGAAGGCGGTGGCGGGGGAGGGGCcggacgcagatgcggacgcgg
atgcggacgcggacgcggacgGAGCCGGCACCGAGACGAGTACGATGGAG
AGCGGAAGCAACGATGAGAGCACGGAGTGCGCATTTTTCGGCGACGACGT
GGAGGAACACGACGGATTGGCGGACATGATCGAGATGGGCGCGGAGGAGA
TGTCGCTCGACAGCACACTGCTGCAGGATGGCGAGGACTGGCAACTGACT
GACAGTTTGGGCAGCGAGCTGCTACCGGACACGCTGCTGGGCAGCCCGCT
GTGA
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Coding sequence (CDS) from alignment at NODE_556_length_22202_cov_4.379087:4..1107+

>Gcaud9952.t1 ID=Gcaud9952.t1|Name=Gcaud9952.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_556_length_22202_cov_4.379087:4..1107+ (Gracilaria caudata M_176_S67 male)
ATGGATACCACACAATACACTCGCTTCCTAGCGAGTCCGATCGCCGTCGT
GGCGTCGGCCGAGCTCCGCGCCAATGCCGCCGCCAACGCGAGCCGCATCC
GAGAGCTCGAGAACATGTTGCATACCAAGCGTCGCGAGATAGAGCGCTTA
CACAGCGCCAAGCGCCAACGCAGCAGCAGTGTATCACCACCGGTCAGCAT
GACCACCACACCGGTCACCTCGCCCCGAACCATCGACTACATCAAGCAGA
GTCCCCGTGAAATGGCCGCAAGGGGCTCGCACTGGAGTTTTGCAGAGAAG
GCGCGCTTCGAAGCAGCGCTGCATCGATACGGCCCGTTTGCCTGGGATCA
CATCATCCGCGCCGTCGGAACACGCTCCGAGAAGCAAGTCAAGGCGTACG
CCGCGCGGTATAGAAGGAGGAAGAAGCTGGCAGCAAGGGCGCAACAAGAG
GCTGTTCGCGCGTTTGCAACCGCTCAACTCAAtgctgcggcggctgctgc
cgccgctgctgccgccgcCAACCATTCGCTTGGCATGCCTGTTAGCGCAA
AGGGCCGTGAGATGAGAAAATCGGAACCTCGATTGGCCACCATCATGCCC
GCTGATTTTCGCTCCACACCTGGCGTGCATGTTCGCTCCGACGGAGTGGC
GCCGTTCGGATGCAACTTGAGCTTGGGCGGTACACCTCGCATGAGCGATT
GGACGTCGCAGCCTTTGGATGAAGCGGCACGCCAATACACGCCGCCCGAG
TGGCGCTTCAATGAGAGCGCGGAGTACGTGGCCGTGAAGACAGAGGCGAC
GGAAGAGAAGGCGGTGGCGGGGGAGGGGCcggacgcagatgcggacgcgg
atgcggacgcggacgcggacgGAGCCGGCACCGAGACGAGTACGATGGAG
AGCGGAAGCAACGATGAGAGCACGGAGTGCGCATTTTTCGGCGACGACGT
GGAGGAACACGACGGATTGGCGGACATGATCGAGATGGGCGCGGAGGAGA
TGTCGCTCGACAGCACACTGCTGCAGGATGGCGAGGACTGGCAACTGACT
GACAGTTTGGGCAGCGAGCTGCTACCGGACACGCTGCTGGGCAGCCCGCT
GTGA
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