Gcaud9889.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9889.t2
Unique NameGcaud9889.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length100
Homology
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A2V3II74_9FLOR (Succinate dehydrogenase assembly factor 2, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II74_9FLOR)

HSP 1 Score: 152 bits (384), Expect = 1.180e-45
Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 0
Query:    3 GAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYASGDGHVNDR 99
            GA IP +++ RQRRIIYRSKQRGWLELDILFGNWA K+VP +SD+  + M E LL+A+TPDVLKWVL Q EPP+ F+NEI+ SLR+YA+GDGHVNDR
Sbjct:   42 GAPIPRDLTARQRRIIYRSKQRGWLELDILFGNWAAKHVPGISDERHVEMVERLLEAETPDVLKWVLGQSEPPLHFRNEILASLREYATGDGHVNDR 138          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A5J4YQH3_PORPP (Succinate dehydrogenase assembly factor 2, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQH3_PORPP)

HSP 1 Score: 82.8 bits (203), Expect = 5.690e-18
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 0
Query:    3 GAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVP-------------TMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNE-IMDSLRDYASGDGHVNDR 99
            G      +S RQ+R +YRSKQRGWLE+D++ G W   ++               + D+  +   E +LDA+TPD+ KWV  QQEPP       +  S++++A G G+++ R
Sbjct:   46 GLGAMSELSSRQKRALYRSKQRGWLEMDVILGRWTSLHMQRLLESQKPGAPPSVLGDEQGMAQLERILDAETPDIFKWVTGQQEPPADVGGSTVFQSIQEFAFGAGNISTR 156          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A7S2D3N9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3N9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.120e-17
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    3 GAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 90
            G +  D   +R++RIIYRSKQRGWLE+D+L G WAVK+VP ++ + +L   E +L+ +T D+  ++  ++ PP    N IM  L+ + 
Sbjct:   78 GTRSIDPDGIRRKRIIYRSKQRGWLEVDLLLGTWAVKHVPDLTVE-ELDQYETILNRETMDIFNYITGKEAPPPEIDNAIMVQLKKWT 164          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A7S2FF45_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FF45_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.650e-17
Identity = 35/81 (43.21%), Postives = 57/81 (70.37%), Query Frame = 0
Query:   12 VRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYASG 92
            VR++R++YRSKQRGWLE+D+L G +AV +VPTMS   ++   E +L+ +T D+ ++V  ++ PP      +M  L+D+A+G
Sbjct:    5 VRRKRLVYRSKQRGWLEVDLLMGTFAVAHVPTMSA-AEMDEYEAILNQETIDIFEYVTAKKAPPADIDTGMMHKLQDWANG 84          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A7S2AGR3_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AGR3_9DINO)

HSP 1 Score: 77.4 bits (189), Expect = 5.840e-16
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 0
Query:    4 AQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQ-NEIMDSLRDYASGD 93
            A+    +  R++R+++R+K RGWLELD+L G +A K++P   D+ +L + E++LD + PD+ KW   Q E P   + NE+M  + D+   D
Sbjct:   52 AEAGAELEKRKKRLLWRAKSRGWLELDVLMGTFAAKHIPDF-DEEKLDLLEEVLDLENPDLFKWFTGQVEVPDEIKGNEVMSMMLDFVKSD 141          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A7S2R8F6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8F6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.340e-15
Identity = 34/89 (38.20%), Postives = 59/89 (66.29%), Query Frame = 0
Query:    3 GAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYAS 91
            G    D  ++R++R+IYRSKQRGWLE+D+L G WAV++VP++S + +L   E LL+ +T D+   V  +  PP   ++ ++  ++ +A+
Sbjct:   47 GETRVDGDTIRRKRLIYRSKQRGWLEVDLLMGTWAVEHVPSLSSE-ELDQYEALLNRETIDIFNIVTGKDVPPPEVESPLLKKIQAWAN 134          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A7S4EEB6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EEB6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.430e-15
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 0
Query:    5 QIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYAS 91
            +IP + +VR++R+IYRSKQRGWLE+D+L G+WA + V T+S +      E +L+ +T D+  ++  +   P R    +M  L+DY +
Sbjct:  110 KIPADDAVRRKRLIYRSKQRGWLEVDLLLGSWAAENVATLSKED-CDAYEHILNCETIDIFNFITGKDPVPPRLDTPVMKRLQDYCA 195          
BLAST of Gcaud9889.t2 vs. uniprot
Match: G4ZRU4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZRU4_PHYSP)

HSP 1 Score: 73.9 bits (180), Expect = 9.220e-15
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0
Query:    3 GAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 90
            G +  D     ++R+IYRSKQRGWLE+D+L G WA + V  +S D +L   ED+L+ +T D+  ++  +   P R    +M  L+DY 
Sbjct:   26 GERRVDANEANRKRVIYRSKQRGWLEVDLLLGRWASQNVMALSSD-ELRQYEDILNEETIDIFNYISGKSPVPARLDTPMMKRLQDYC 112          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A0G4E8C8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4E8C8_VITBC)

HSP 1 Score: 73.9 bits (180), Expect = 9.900e-15
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 0
Query:   13 RQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQN 80
            R+++++YRSKQRGWLELD+L G++A KY+ + S+  QL   + LLD + P++ KW+  Q+E PV + N
Sbjct:   45 RRKKLLYRSKQRGWLELDVLMGSFADKYLGSFSEQ-QLDQFDKLLDCENPNLFKWLSGQEEVPVEWAN 111          
BLAST of Gcaud9889.t2 vs. uniprot
Match: A0A329S672_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S672_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.540e-14
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 0
Query:    3 GAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQLTMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYA 90
            G  + D     ++RIIYRSKQRGWLE+D+L G WA + V  +S D +L   ED+L+ +T D+  ++  + + P R    +M  L++Y 
Sbjct:   72 GDHLVDLEEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSSD-ELQQYEDILNEETIDIFNYISGKSDVPQRLDTPMMKRLQEYC 158          
The following BLAST results are available for this feature:
BLAST of Gcaud9889.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3II74_9FLOR1.180e-4571.13Succinate dehydrogenase assembly factor 2, mitocho... [more]
A0A5J4YQH3_PORPP5.690e-1835.14Succinate dehydrogenase assembly factor 2, mitocho... [more]
A0A7S2D3N9_9STRA6.120e-1740.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2FF45_9STRA6.650e-1743.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AGR3_9DINO5.840e-1637.36Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S2R8F6_9STRA1.340e-1538.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4EEB6_9STRA6.430e-1539.08Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
G4ZRU4_PHYSP9.220e-1538.64Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A0G4E8C8_VITBC9.900e-1547.06Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A329S672_9STRA2.540e-1438.64Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036714Flavinator of succinate dehydrogenase superfamilyGENE3D1.10.150.250Flavinator of succinate dehydrogenasecoord: 10..95
e-value: 2.5E-20
score: 74.3
IPR036714Flavinator of succinate dehydrogenase superfamilySUPERFAMILY109910YgfY-likecoord: 9..88
IPR005631Flavinator of succinate dehydrogenasePFAMPF03937Sdh5coord: 15..89
e-value: 1.4E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR12469PROTEIN EMI5 HOMOLOG, MITOCHONDRIALcoord: 11..91
NoneNo IPR availablePANTHERPTHR12469:SF2SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 2, MITOCHONDRIALcoord: 11..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_428_length_25911_cov_4.217002contigNODE_428_length_25911_cov_4.217002:23312..23798 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2Gcaud9889.t2Gracilaria caudata M_176_S67 malemRNANODE_428_length_25911_cov_4.217002 23312..23798 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9889.t2 ID=Gcaud9889.t2|Name=Gcaud9889.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=100bp
MGGAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQL
TMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYASGDGHVNDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036714SDH_sf
IPR005631SDH