Gcaud9889.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9889.t2
Unique NameGcaud9889.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_428_length_25911_cov_4.217002contigNODE_428_length_25911_cov_4.217002:23312..23798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009373661.1
PFAMsSdh5
Max annot lvl35493|Streptophyta
GOsGO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016043,GO:0016310,GO:0016999,GO:0017144,GO:0018065,GO:0018293,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0022900,GO:0022904,GO:0033108,GO:0034552,GO:0034553,GO:0034622,GO:0034641,GO:0036211,GO:0042773,GO:0042775,GO:0043170,GO:0043412,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0065003,GO:0071704,GO:0071840,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue3.31e-14
EggNOG OGsCOG2938@1|root,KOG3326@2759|Eukaryota,37U80@33090|Viridiplantae,3GI3I@35493|Streptophyta,4JPPG@91835|fabids
DescriptionFlavinator of succinate dehydrogenase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9889Gcaud9889Gracilaria caudata M_176_S67 malegeneNODE_428_length_25911_cov_4.217002 23312..23802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2Gcaud9889.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_428_length_25911_cov_4.217002 23312..23798 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2.stop1Gcaud9889.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_428_length_25911_cov_4.217002 23312..23314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2.CDS1Gcaud9889.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_428_length_25911_cov_4.217002 23312..23607 -
Gcaud9889.t2.CDS2Gcaud9889.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_428_length_25911_cov_4.217002 23795..23798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2.exon1Gcaud9889.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_428_length_25911_cov_4.217002 23312..23607 -
Gcaud9889.t2.exon2Gcaud9889.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_428_length_25911_cov_4.217002 23795..23798 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2.intron1Gcaud9889.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_428_length_25911_cov_4.217002 23608..23794 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9889.t2.start1Gcaud9889.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_428_length_25911_cov_4.217002 23796..23798 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9889.t2 ID=Gcaud9889.t2|Name=Gcaud9889.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=100bp
MGGAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQL
TMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYASGDGHVNDR*
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spliced messenger RNA

>Gcaud9889.t2 ID=Gcaud9889.t2|Name=Gcaud9889.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=300bp|location=Sequence derived from alignment at NODE_428_length_25911_cov_4.217002:23312..23798- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGGGCTCAGATTCCTGACAACGTTTCCGTGCGCCAAAGAAGAAT
TATCTATCGGAGCAAGCAGAGAGGGTGGTTGGAACTTGATATCCTTTTTG
GCAACTGGGCAGTCAAATATGTGCCGACAATGAGTGACGACGGTCAGTTG
ACCATGACTGAAGACTTGTTAGACGCCGATACACCTGACGTTCTTAAATG
GGTACTGAGACAGCAAGAACCTCCGGTTCGGTTTCAGAATGAGATCATGG
ACAGTTTACGAGATTATGCTTCAGGTGATGGTCATGTCAATGACCGCTGA
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protein sequence of Gcaud9889.t2

>Gcaud9889.t2 ID=Gcaud9889.t2|Name=Gcaud9889.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=100bp
MGGAQIPDNVSVRQRRIIYRSKQRGWLELDILFGNWAVKYVPTMSDDGQL
TMTEDLLDADTPDVLKWVLRQQEPPVRFQNEIMDSLRDYASGDGHVNDR*
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mRNA from alignment at NODE_428_length_25911_cov_4.217002:23312..23798-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9889.t2 ID=Gcaud9889.t2|Name=Gcaud9889.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=487bp|location=Sequence derived from alignment at NODE_428_length_25911_cov_4.217002:23312..23798- (Gracilaria caudata M_176_S67 male)
ATGGGTAAGCCTCTGCTCGTCTAGAAAATTTTGTTCCCCTCTACACTTGC
GTTTACATATCATGCAGCGTCTTTCGGCCATTCGTAATTGCTACTCGCAA
CTCGAGGTCGTCTCTCAAGCCTCGACAACGCTACGGAGCCTAACCACGGG
TGTGAAACAATGGCACATTGAGCACCTTCGCGCACCACAAGGAGGGGCTC
AGATTCCTGACAACGTTTCCGTGCGCCAAAGAAGAATTATCTATCGGAGC
AAGCAGAGAGGGTGGTTGGAACTTGATATCCTTTTTGGCAACTGGGCAGT
CAAATATGTGCCGACAATGAGTGACGACGGTCAGTTGACCATGACTGAAG
ACTTGTTAGACGCCGATACACCTGACGTTCTTAAATGGGTACTGAGACAG
CAAGAACCTCCGGTTCGGTTTCAGAATGAGATCATGGACAGTTTACGAGA
TTATGCTTCAGGTGATGGTCATGTCAATGACCGCTGA
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Coding sequence (CDS) from alignment at NODE_428_length_25911_cov_4.217002:23312..23798-

>Gcaud9889.t2 ID=Gcaud9889.t2|Name=Gcaud9889.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=300bp|location=Sequence derived from alignment at NODE_428_length_25911_cov_4.217002:23312..23798- (Gracilaria caudata M_176_S67 male)
ATGGGAGGGGCTCAGATTCCTGACAACGTTTCCGTGCGCCAAAGAAGAAT
TATCTATCGGAGCAAGCAGAGAGGGTGGTTGGAACTTGATATCCTTTTTG
GCAACTGGGCAGTCAAATATGTGCCGACAATGAGTGACGACGGTCAGTTG
ACCATGACTGAAGACTTGTTAGACGCCGATACACCTGACGTTCTTAAATG
GGTACTGAGACAGCAAGAACCTCCGGTTCGGTTTCAGAATGAGATCATGG
ACAGTTTACGAGATTATGCTTCAGGTGATGGTCATGTCAATGACCGCTGA
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