Gcaud977.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud977.t1
Unique NameGcaud977.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length390
Homology
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A2V3INB0_9FLOR (Putative ribonuclease ZC3H12C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INB0_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 1.680e-70
Identity = 167/388 (43.04%), Postives = 217/388 (55.93%), Query Frame = 0
Query:    6 DENDPEFLEALQRSLQVTNLEEAMLAKALADSISTRDEEIARNLQREQLLMLEKSLCDEAQDTDNAPPNSTAPETQPQLTNRGAHVPSQSSQPNSAIGDEELARA-LQREESRLFSEGVCEVIDPSTFTTVQYRKKNRSTRGQTGSCDPLHESRHCVAEAQPSPSSSQRQTPQRRFYVHRQTSPDAEKRRRLDSIVEGGDRPHTAYATASSASGSSKEHSSAPVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPK-----RIGAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPNPRQLSRAEHCKRDSRYTR 387
            D +D E  EAL+RS + T LEE+MLA+ALA SI+TRDEE+AR+LQ+EQL + E++LC E+    N P   T P               Q  QP+++  +  L  A    +ES+  +E      +P                 +T                  SP S+ + T  +    H Q SP       LDS        H               ++S PVVVIDGQNVG +YGG   N+  FRA+G++VVLDYY+ KGMKAVAMLP      R G  +   AD   +   LA +  +SFTPSG+HDD+FLLAYAKQK+IDI+SNDRF+KE+ +Q + AASRALQ FL++HLIPYTFV+GEF+PNPNP QLS A HC R  R+ R
Sbjct:    5 DHDDCELQEALRRSREETTLEESMLAQALAASIATRDEELARSLQQEQLRLFEENLCSES-CASNTP---TTP---------------QGGQPSASASEVLLNEAGPSSQESKRRNE------EPHXXXXXXXXXXXXXXXXRT------------------SPLSNAQSTQNK----HLQPSPT------LDSTTSNVHPRHNG-------------NTSMPVVVIDGQNVGCSYGGGK-NL--FRAKGVQVVLDYYSGKGMKAVAMLPAHKVDTRPGIKNDRVADDPELLKNLAAQNLVSFTPSGSHDDHFLLAYAKQKNIDIISNDRFQKEVSEQASQAASRALQTFLDKHLIPYTFVDGEFMPNPNPHQLSLASHCSRGPRHRR 323          
BLAST of Gcaud977.t1 vs. uniprot
Match: R7Q260_CHOCR (RNase NYN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q260_CHOCR)

HSP 1 Score: 162 bits (409), Expect = 1.090e-40
Identity = 148/483 (30.64%), Postives = 216/483 (44.72%), Query Frame = 0
Query:    3 TIDDENDP----EFLEALQRSLQVTNLEEAMLAKALADSISTRDEEIARNLQREQLLMLEKSLCDEAQDTDNAPP------NSTAPETQPQLTNRGAHVPSQSSQPNSAIGDEELARALQREESRLFSEGV-----CEVIDPSTFTTVQYRKKNRSTRGQTGSCDPLHESRHCVA-----EAQPSP----SSSQRQTPQRRFYVHRQTS---------------------------------PDAEKRRRLDSIVEG--------------GDRPHTAYATASSASGSSKEHSSA------------------------PVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPK---------RIGAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPNPRQLSRAEHCKR 381
            T++  ND     +  EAL+RS + TNL+E  LA A+A+S++TRDEEIARN+QR Q+ + E++L   A D D   P      NS +  T  +  N   H+ S  S P            L+   S      +      + +  ST    Q+ ++ +          P    RH ++      + PSP      S   +PQ  +  +R  S                                 P       L  I  G              G  P T YA+A +A+    +  S                         P V+IDGQNVG  YG  N +I  F++ G+++ LDYYAA G++A+A+LP+         R G  +   AD   + N L  +GR+ FTP+G+HDD+F+L YA +K+ D++SNDRF KE++ QET    R ++ FL  HLIPYTF+  +F+PNPNP +L R  H  R
Sbjct:  165 TMEQNNDQHLQAQIAEALRRSREETNLDETNLAAAMANSLTTRDEEIARNMQRAQIQVYEQNLYQNASDEDEDHPSPWQHVNSQSQRTDARRVN---HIHSSQSLPIRRTSARPATAQLRNRPSSYRGPDIPGTRRVQEVPASTNWNSQWAQQIQPR--------PTETHRHYISPPAWGRSPPSPHHLAGGSGPHSPQSAYPHNRPLSNRNSXXXXXXXXXXXXXXXXXXXXXXXSPQHNGPSPNFTSSLTPINIGPPQLQQSTPFLPSPGRSPLT-YASAVAANVPQPQPPSPQRPNTQPRLSQRSQDVPITIPEGEPTVIIDGQNVGRDYG-ENDHI--FQSRGVKLALDYYAANGIRALALLPRNKVDQRTYLRPGVRNTLVADDPELLNELHSQGRVYFTPAGSHDDFFILRYAMRKEADVISNDRFIKELEMQETAEDVRDMRTFLETHLIPYTFIGQDFVPNPNPCRLGRNVHQSR 632          
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A7J6SE35_PEROL (RNase NYN domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SE35_PEROL)

HSP 1 Score: 92.0 bits (227), Expect = 8.200e-17
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 0
Query:  227 PVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI------------------------GAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            P+++IDG NV + +GG     + F  +G+++ +DYY ++G + +  LP  +                         AP     D   I  +L  +GRL+ TPS  +DD + L YA +KD  IVSND +R  +K+Q +   S ++Q +L  H++ YTFV  EF+PNP+
Sbjct:  246 PLILIDGPNVANRHGG-----QQFTCKGLQICVDYYTSRGHEVMVFLPDYLVNRNELFRLRNAQKMKVQTVHGIKAAPTHIPVDNIGILLKLQTQGRLALTPSKDYDDSYCLQYALKKDAVIVSNDMYRDWVKKQLSWKKSESIQ-WLRTHVVSYTFVKDEFMPNPD 406          
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A7J6LWI2_PEROL (RRM domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LWI2_PEROL)

HSP 1 Score: 92.8 bits (229), Expect = 1.410e-16
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 0
Query:  227 PVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI------------------------GAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            P+++IDG NV + +GG     + F  +G+++ +DYY ++G + +  LP  +                         AP     D   I  +L  +GRL+ TPS  +DD + L YA +KD  IVSND +R  +K+Q +   S ++Q +L  H++ YTFV  EF+PNP+
Sbjct: 1816 PLILIDGPNVANRHGG-----QQFTCKGLQICVDYYTSRGHEVMVFLPDYLVNRNELFRLRNAQKMKVQTVHGIKAAPTHIPVDNIGILLKLQTQGRLALTPSKDYDDSYCLQYALKKDAVIVSNDMYRDWVKKQPSWKKSESIQ-WLRTHVVSYTFVKDEFMPNPD 1976          
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A7J6S9L8_PEROL (RNase NYN domain-containing protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6S9L8_PEROL)

HSP 1 Score: 92.0 bits (227), Expect = 1.740e-16
Identity = 55/167 (32.93%), Postives = 88/167 (52.69%), Query Frame = 0
Query:  227 PVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI------------------------GAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            P+++IDG NV + +GG     + F  +G+++ +DYY ++G + +  LP  +                         AP     D   I  +L  +GRL+ TPS  +DD + L YA +KD  IVSND +R  +K+Q +   S ++Q +L  H++ YTFV  EF+PNP+
Sbjct:  502 PLILIDGPNVANRHGG-----QQFTCKGLQICVDYYTSRGHEVMVFLPDYLVNRNELFRLRNAQKMKVQTVHGIKAAPTHIPVDNIGILLKLQTQGRLALTPSKDYDDSYCLQYALKKDAVIVSNDMYRDWVKKQPSWKKSGSIQ-WLRTHVVSYTFVKDEFMPNPD 662          
BLAST of Gcaud977.t1 vs. uniprot
Match: C5KL87_PERM5 (RNase NYN domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KL87_PERM5)

HSP 1 Score: 92.0 bits (227), Expect = 1.750e-16
Identity = 65/206 (31.55%), Postives = 100/206 (48.54%), Query Frame = 0
Query:  188 PDAEKRRRLDSIVEGGDRPHTAYATASSASGSSKEHSSAPVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI------------------------GAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            PD E  RR  ++V         +A       S  E+   P+V+IDG NV + +GG     + F  +G+++ +DYY ++G + +  LP  +                         AP     D   I  +L  +GRL+ TPS  +DD + L YA +KD  IVSND +R  +K+Q +   S ++  +L  H+I YTFV  EF+PNP+
Sbjct:  476 PDDESTRRRTAVVRS-------HAPGRHERPSESEYK--PLVLIDGPNVANRHGG-----QQFTCKGLQICVDYYISRGHEVMVFLPDYLVNRNELFKLRNAQKMRVQTVHGIKAAPTHIPVDNIGILLKLQTQGRLALTPSKDYDDSYCLQYAHRKDAVIVSNDMYRDWVKKQPSWKKSESIL-WLRTHVISYTFVKDEFMPNPD 666          
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A7J6MT84_PERCH (RRM domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MT84_PERCH)

HSP 1 Score: 90.9 bits (224), Expect = 6.100e-16
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = 0
Query:  227 PVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI------------------------GAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            P+V+IDG NV + +GG     + F  +G+++ +DYY ++G + +  LP  +                         AP     D   I  +L  +GRL+ TPS  +DD + L YA++KD  IVSND +R  +K+Q +   + ++ ++L  H++ YTFV  EF+PNP+
Sbjct: 1875 PLVLIDGPNVANRHGG-----QQFTCKGLQICVDYYVSRGHEVMVFLPDYLVDRNELFKLRNAQKMKVQTLHGIKAAPTHIPVDNIGILLKLQTQGRLALTPSKDYDDSYCLQYARKKDGVIVSNDMYRDWVKKQPSWKKTESI-HWLRTHVVSYTFVKDEFMPNPD 2035          
BLAST of Gcaud977.t1 vs. uniprot
Match: C5KHK3_PERM5 (RNase NYN domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KHK3_PERM5)

HSP 1 Score: 90.5 bits (223), Expect = 6.540e-16
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 0
Query:  227 PVVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI------------------------GAPDAPDADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            P+V+IDG NV + +GG     + F  +G+++ +DYY ++G + +  LP  +                         AP     D      +L  +GRL+ TPS  +DD + L YA +KD  IVSND +R  +K+Q +     ++Q +L  H++ YTFV  EF+PNP+
Sbjct:  720 PLVLIDGPNVANRHGG-----QQFTCKGLQICVDYYVSRGHEVLVFLPDYLVNRNELFKLRNAQKMRVQTMHGIKAAPTHIPVDNIGFLLKLQTQGRLALTPSKDYDDSYCLQYAHKKDAVIVSNDMYRDWVKKQPSWRKGESIQ-WLRTHVVSYTFVRDEFMPNPD 880          
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A0G4GLE2_9ALVE (RNase NYN domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GLE2_9ALVE)

HSP 1 Score: 86.7 bits (213), Expect = 1.340e-14
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 0
Query:  228 VVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRI----GAPDAPDADAAAIANR------LADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIK-------QQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            +VVIDG NV   +GG       F  EG+ + LDYY  +G +AVA +P  I      P  P+ D + IA++      L  +G ++ TP   +DD + + YA+  D  +VSND FR  ++       QQ+  A  RA Q +++ H+I +TFV  EF+PNP+
Sbjct: 1032 LVVIDGCNVALRHGGVGIGKGFFSCEGVRLALDYYLQRGHRAVAFVPDYILKGRKDPAKPEKDPSKIADKPLLLESLVKQGLVALTPPQDYDDSYSIKYAQTHDGCVVSNDLFRDFVQKAGGTQGQQDKRARDRA-QRWVSSHVISFTFVGDEFIPNPD 1189          
BLAST of Gcaud977.t1 vs. uniprot
Match: A0A151Z3Z9_9MYCE (RNase NYN domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z3Z9_9MYCE)

HSP 1 Score: 77.0 bits (188), Expect = 1.640e-11
Identity = 50/156 (32.05%), Postives = 76/156 (48.72%), Query Frame = 0
Query:  228 VVVIDGQNVGHTYGGSNGNIRNFRAEGIEVVLDYYAAKGMKAVAMLPKRIGAPDAPD--------------ADAAAIANRLADEGRLSFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFLNRHLIPYTFVNGEFLPNPN 369
            VVVIDG NV        G  + F    ++  LDYY  +G + VA +P+   +                   AD      +L +   +S TP   +DD + + YAK+ +  IV+NDR+   I++QE +   +  + F+  H I +TFV GEFLPNP+
Sbjct:  729 VVVIDGPNVA-----KYGTTKKFSVSSLKKALDYYNQRGYEVVAFVPQSFISTKTSHEPKKNFTLFEYRDIADDLVGLQKLVEANLVSLTPPQDYDDSYAIHYAKKHNAVIVTNDRYNDHIEKQEESERPK-FRKFIRDHCISFTFVRGEFLPNPD 878          
The following BLAST results are available for this feature:
BLAST of Gcaud977.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2V3INB0_9FLOR1.680e-7043.04Putative ribonuclease ZC3H12C n=1 Tax=Gracilariops... [more]
R7Q260_CHOCR1.090e-4030.64RNase NYN domain-containing protein n=1 Tax=Chondr... [more]
A0A7J6SE35_PEROL8.200e-1732.93RNase NYN domain-containing protein n=1 Tax=Perkin... [more]
A0A7J6LWI2_PEROL1.410e-1632.93RRM domain-containing protein n=1 Tax=Perkinsus ol... [more]
A0A7J6S9L8_PEROL1.740e-1632.93RNase NYN domain-containing protein n=2 Tax=Perkin... [more]
C5KL87_PERM51.750e-1631.55RNase NYN domain-containing protein n=1 Tax=Perkin... [more]
A0A7J6MT84_PERCH6.100e-1632.34RRM domain-containing protein n=1 Tax=Perkinsus ch... [more]
C5KHK3_PERM56.540e-1632.34RNase NYN domain-containing protein n=1 Tax=Perkin... [more]
A0A0G4GLE2_9ALVE1.340e-1436.48RNase NYN domain-containing protein n=1 Tax=Chrome... [more]
A0A151Z3Z9_9MYCE1.640e-1132.05RNase NYN domain-containing protein n=1 Tax=Tieghe... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021869Ribonuclease Zc3h12a-like, NYN domainPFAMPF11977RNase_Zc3h12acoord: 228..370
e-value: 6.2E-18
score: 65.0
NoneNo IPR availableGENE3D3.40.50.11980coord: 227..378
e-value: 4.9E-33
score: 116.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2546_length_5348_cov_4.875594contigNODE_2546_length_5348_cov_4.875594:3307..4476 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud977.t1Gcaud977.t1Gracilaria caudata M_176_S67 malemRNANODE_2546_length_5348_cov_4.875594 3307..4476 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud977.t1 ID=Gcaud977.t1|Name=Gcaud977.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=390bp
MTTIDDENDPEFLEALQRSLQVTNLEEAMLAKALADSISTRDEEIARNLQ
REQLLMLEKSLCDEAQDTDNAPPNSTAPETQPQLTNRGAHVPSQSSQPNS
AIGDEELARALQREESRLFSEGVCEVIDPSTFTTVQYRKKNRSTRGQTGS
CDPLHESRHCVAEAQPSPSSSQRQTPQRRFYVHRQTSPDAEKRRRLDSIV
EGGDRPHTAYATASSASGSSKEHSSAPVVVIDGQNVGHTYGGSNGNIRNF
RAEGIEVVLDYYAAKGMKAVAMLPKRIGAPDAPDADAAAIANRLADEGRL
SFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFL
NRHLIPYTFVNGEFLPNPNPRQLSRAEHCKRDSRYTRRE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021869RNase_Zc3h12_NYN