Gcaud977.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud977.t1
Unique NameGcaud977.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2546_length_5348_cov_4.875594contigNODE_2546_length_5348_cov_4.875594:3307..4476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003284029.1
PFAMsRNase_Zc3h12a
Max annot lvl554915|Amoebozoa
Evalue5.2e-12
EggNOG OGsKOG3777@1|root,KOG3777@2759|Eukaryota,3X9FW@554915|Amoebozoa
DescriptionZc3h12a-like Ribonuclease NYN domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud977Gcaud977Gracilaria caudata M_176_S67 malegeneNODE_2546_length_5348_cov_4.875594 3307..4476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud977.t1.stop1Gcaud977.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2546_length_5348_cov_4.875594 3307..3309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud977.t1.CDS1Gcaud977.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2546_length_5348_cov_4.875594 3307..4476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud977.t1.exon1Gcaud977.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2546_length_5348_cov_4.875594 3307..4476 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud977.t1.start1Gcaud977.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2546_length_5348_cov_4.875594 4474..4476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud977.t1Gcaud977.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2546_length_5348_cov_4.875594 3307..4476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud977.t1 ID=Gcaud977.t1|Name=Gcaud977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp
MTTIDDENDPEFLEALQRSLQVTNLEEAMLAKALADSISTRDEEIARNLQ
REQLLMLEKSLCDEAQDTDNAPPNSTAPETQPQLTNRGAHVPSQSSQPNS
AIGDEELARALQREESRLFSEGVCEVIDPSTFTTVQYRKKNRSTRGQTGS
CDPLHESRHCVAEAQPSPSSSQRQTPQRRFYVHRQTSPDAEKRRRLDSIV
EGGDRPHTAYATASSASGSSKEHSSAPVVVIDGQNVGHTYGGSNGNIRNF
RAEGIEVVLDYYAAKGMKAVAMLPKRIGAPDAPDADAAAIANRLADEGRL
SFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFL
NRHLIPYTFVNGEFLPNPNPRQLSRAEHCKRDSRYTRRE*
back to top

spliced messenger RNA

>Gcaud977.t1 ID=Gcaud977.t1|Name=Gcaud977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at NODE_2546_length_5348_cov_4.875594:3307..4476- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACCATCGATGATGAGAACGACCCCGAGTTTCTGGAAGCGCTGCA
ACGCAGTCTTCAAGTAACTAATCTGGAAGAAGCTATGTTGGCCAAAGCTT
TGGCAGACAGTATTAGCACCAGGGATGAAGAAATAGCACGTAACCTGCAA
AGAGAACAGCTCCTTATGCTTGAGAAGAGCCTCTGCGATGAAGCACAAGA
TACTGACAACGCGCCTCCCAACTCGACCGCTCCCGAAACGCAACCGCAGC
TCACTAATCGTGGTGCACATGTGCCCTCCCAATCTTCACAGCCGAACTCG
GCTATTGGCGACGAAGAGCTTGCACGTGCTTTGCAGAGAGAAGAATCTCG
CCTCTTTAGCGAGGGCGTATGTGAGGTTATTGACCCCTCGACGTTCACCA
CCGTGCAATATAGAAAGAAGAATCGCTCAACAAGAGGTCAAACCGGCTCA
TGTGACCCTTTGCATGAATCACGGCATTGCGTAGCAGAGGCGCAACCTTC
GCCTTCATCATCGCAGCGACAAACCCCTCAACGGCGCTTTTATGTGCATC
GACAAACATCACCCGATGCAGAAAAGAGGCGTCGTCTGGATAGCATTGTG
GAAGGCGGAGACAGGCCCCATACAGCGTATGCAACTGCTTCTTCTGCAAG
TGGGAGTTCAAAGGAGCATTCTTCAGCCCCAGTTGTGGTTATTGACGGAC
AGAATGTTGGGCATACCTATGGAGGCAGTAATGGTAACATTCGCAACTTC
CGCGCTGAGGGCATCGAAGTAGTGCTCGACTATTACGCGGCCAAGGGCAT
GAAAGCGGTTGCAATGCTACCTAAGCGAATAGGAGCACCCGACGCACCCG
ATGCAGATGCGGCTGCTATTGCGAACAGACTGGCCGACGAAGGTCGCCTT
TCGTTCACTCCCTCTGGTGCGCATGACGATTACTTTCTTTTGGCGTATGC
AAAACAGAAGGACATTGATATCGTTTCCAATGATCGCTTTCGGAAGGAGA
TTAAGCAACAAGAAACCACGGCCGCTTCTCGCGCTCTGCAGAATTTCCTC
AACCGACATCTTATACCATACACTTTTGTGAATGGTGAGTTCTTGCCGAA
CCCAAACCCGCGTCAGCTTAGCCGTGCGGAGCACTGCAAACGAGACTCTC
GCTATACACGTAGAGAGTGA
back to top

protein sequence of Gcaud977.t1

>Gcaud977.t1 ID=Gcaud977.t1|Name=Gcaud977.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=390bp
MTTIDDENDPEFLEALQRSLQVTNLEEAMLAKALADSISTRDEEIARNLQ
REQLLMLEKSLCDEAQDTDNAPPNSTAPETQPQLTNRGAHVPSQSSQPNS
AIGDEELARALQREESRLFSEGVCEVIDPSTFTTVQYRKKNRSTRGQTGS
CDPLHESRHCVAEAQPSPSSSQRQTPQRRFYVHRQTSPDAEKRRRLDSIV
EGGDRPHTAYATASSASGSSKEHSSAPVVVIDGQNVGHTYGGSNGNIRNF
RAEGIEVVLDYYAAKGMKAVAMLPKRIGAPDAPDADAAAIANRLADEGRL
SFTPSGAHDDYFLLAYAKQKDIDIVSNDRFRKEIKQQETTAASRALQNFL
NRHLIPYTFVNGEFLPNPNPRQLSRAEHCKRDSRYTRRE*
back to top

mRNA from alignment at NODE_2546_length_5348_cov_4.875594:3307..4476-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud977.t1 ID=Gcaud977.t1|Name=Gcaud977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at NODE_2546_length_5348_cov_4.875594:3307..4476- (Gracilaria caudata M_176_S67 male)
ATGACGACCATCGATGATGAGAACGACCCCGAGTTTCTGGAAGCGCTGCA
ACGCAGTCTTCAAGTAACTAATCTGGAAGAAGCTATGTTGGCCAAAGCTT
TGGCAGACAGTATTAGCACCAGGGATGAAGAAATAGCACGTAACCTGCAA
AGAGAACAGCTCCTTATGCTTGAGAAGAGCCTCTGCGATGAAGCACAAGA
TACTGACAACGCGCCTCCCAACTCGACCGCTCCCGAAACGCAACCGCAGC
TCACTAATCGTGGTGCACATGTGCCCTCCCAATCTTCACAGCCGAACTCG
GCTATTGGCGACGAAGAGCTTGCACGTGCTTTGCAGAGAGAAGAATCTCG
CCTCTTTAGCGAGGGCGTATGTGAGGTTATTGACCCCTCGACGTTCACCA
CCGTGCAATATAGAAAGAAGAATCGCTCAACAAGAGGTCAAACCGGCTCA
TGTGACCCTTTGCATGAATCACGGCATTGCGTAGCAGAGGCGCAACCTTC
GCCTTCATCATCGCAGCGACAAACCCCTCAACGGCGCTTTTATGTGCATC
GACAAACATCACCCGATGCAGAAAAGAGGCGTCGTCTGGATAGCATTGTG
GAAGGCGGAGACAGGCCCCATACAGCGTATGCAACTGCTTCTTCTGCAAG
TGGGAGTTCAAAGGAGCATTCTTCAGCCCCAGTTGTGGTTATTGACGGAC
AGAATGTTGGGCATACCTATGGAGGCAGTAATGGTAACATTCGCAACTTC
CGCGCTGAGGGCATCGAAGTAGTGCTCGACTATTACGCGGCCAAGGGCAT
GAAAGCGGTTGCAATGCTACCTAAGCGAATAGGAGCACCCGACGCACCCG
ATGCAGATGCGGCTGCTATTGCGAACAGACTGGCCGACGAAGGTCGCCTT
TCGTTCACTCCCTCTGGTGCGCATGACGATTACTTTCTTTTGGCGTATGC
AAAACAGAAGGACATTGATATCGTTTCCAATGATCGCTTTCGGAAGGAGA
TTAAGCAACAAGAAACCACGGCCGCTTCTCGCGCTCTGCAGAATTTCCTC
AACCGACATCTTATACCATACACTTTTGTGAATGGTGAGTTCTTGCCGAA
CCCAAACCCGCGTCAGCTTAGCCGTGCGGAGCACTGCAAACGAGACTCTC
GCTATACACGTAGAGAGTGA
back to top

Coding sequence (CDS) from alignment at NODE_2546_length_5348_cov_4.875594:3307..4476-

>Gcaud977.t1 ID=Gcaud977.t1|Name=Gcaud977.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1170bp|location=Sequence derived from alignment at NODE_2546_length_5348_cov_4.875594:3307..4476- (Gracilaria caudata M_176_S67 male)
ATGACGACCATCGATGATGAGAACGACCCCGAGTTTCTGGAAGCGCTGCA
ACGCAGTCTTCAAGTAACTAATCTGGAAGAAGCTATGTTGGCCAAAGCTT
TGGCAGACAGTATTAGCACCAGGGATGAAGAAATAGCACGTAACCTGCAA
AGAGAACAGCTCCTTATGCTTGAGAAGAGCCTCTGCGATGAAGCACAAGA
TACTGACAACGCGCCTCCCAACTCGACCGCTCCCGAAACGCAACCGCAGC
TCACTAATCGTGGTGCACATGTGCCCTCCCAATCTTCACAGCCGAACTCG
GCTATTGGCGACGAAGAGCTTGCACGTGCTTTGCAGAGAGAAGAATCTCG
CCTCTTTAGCGAGGGCGTATGTGAGGTTATTGACCCCTCGACGTTCACCA
CCGTGCAATATAGAAAGAAGAATCGCTCAACAAGAGGTCAAACCGGCTCA
TGTGACCCTTTGCATGAATCACGGCATTGCGTAGCAGAGGCGCAACCTTC
GCCTTCATCATCGCAGCGACAAACCCCTCAACGGCGCTTTTATGTGCATC
GACAAACATCACCCGATGCAGAAAAGAGGCGTCGTCTGGATAGCATTGTG
GAAGGCGGAGACAGGCCCCATACAGCGTATGCAACTGCTTCTTCTGCAAG
TGGGAGTTCAAAGGAGCATTCTTCAGCCCCAGTTGTGGTTATTGACGGAC
AGAATGTTGGGCATACCTATGGAGGCAGTAATGGTAACATTCGCAACTTC
CGCGCTGAGGGCATCGAAGTAGTGCTCGACTATTACGCGGCCAAGGGCAT
GAAAGCGGTTGCAATGCTACCTAAGCGAATAGGAGCACCCGACGCACCCG
ATGCAGATGCGGCTGCTATTGCGAACAGACTGGCCGACGAAGGTCGCCTT
TCGTTCACTCCCTCTGGTGCGCATGACGATTACTTTCTTTTGGCGTATGC
AAAACAGAAGGACATTGATATCGTTTCCAATGATCGCTTTCGGAAGGAGA
TTAAGCAACAAGAAACCACGGCCGCTTCTCGCGCTCTGCAGAATTTCCTC
AACCGACATCTTATACCATACACTTTTGTGAATGGTGAGTTCTTGCCGAA
CCCAAACCCGCGTCAGCTTAGCCGTGCGGAGCACTGCAAACGAGACTCTC
GCTATACACGTAGAGAGTGA
back to top