Gcaud973.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud973.t1
Unique NameGcaud973.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length507
Homology
BLAST of Gcaud973.t1 vs. uniprot
Match: A0A2V3IKH5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKH5_9FLOR)

HSP 1 Score: 256 bits (655), Expect = 1.130e-75
Identity = 160/453 (35.32%), Postives = 257/453 (56.73%), Query Frame = 0
Query:    1 MIIIPVDSKYVNAVVYVVADVLAFNVLQNVTNSIQSFLSKRHLRRGQRVSLRTSWFSMFAPGIHPGGNFLYIRLLIKHIVLPGILFVLTFGINGNATSAPRPATRKYITRLAVT-ENDFDWSRLNSHMFSRCVIGYGNEL------RYFPTAFDVVSNAELDDYFDFRDREGNRVGIDASSMLCQSFSNRSTLLHVTKCGEVMEECDNLDPSPPARIMLVRSNETEHRPWKIDSVQRQFGSGQGIAL--MRVNVRVLSNEVSEIYDRLICRERPVDGSRLSPLNIWLDCILGVWNENGSSFKFRVGYASVAFQRW--SEIFNSSLQTSVTFYAMSTEIEVLWNVSKNSETAFMEAL-NLVEDRVAARPFLDLLFSRAVVASDVTSGMSIYESKTITVTEVAYPAAKGYGVVVSIALVIFLASTFLSAPLTRLFGVHQVAIDVTSYSGLVKVVK 441
            MI + +DS++VNA +Y+V DV    +L +   +IQS  +K  LR+G+ ++L+ +  S+ A G       L+  L++ +++L G+ F LT G++G      RPA+R+Y+TRLAVT + D   +RLN   FS CV   G+ +      RY+PTAFDV+ +A + D + F D     V +D  +MLCQ   N   LL V +CG+   +C N+  +    I L   NE+     + +++    GSG G+ +  + V + V S   S  Y+R+IC ERP  GS  SPL  + +C+LGVWN+N + F+FR+G AS  ++     EI N  +  S+TF A STE+ + WN   N E  F +A+  L +D + AR FLD+L SR +VA D   G+   + + I +TE+   +  GY  V+ +++++    T        L GV  + +D+T+Y+GL+++++
Sbjct:    1 MISLELDSRFVNAAIYIVVDVTCSVILISELQAIQSISTKLRLRQGKSINLQHTNMSVLAGGALKDDTPLFSILVMLNLLLLGVFFFLTLGVSGTTKDVVRPASRRYVTRLAVTGDEDPVRTRLNPTFFSGCVQSDGDGMENATSFRYYPTAFDVIGDARIKDLYTFTDESSAVVSVDVHNMLCQKHGNMKPLLLVKRCGKTKGQCSNMYVTE--FIGLSVQNESS----RFETI----GSGYGLLVGYLTVTINVESRWASG-YNRMICIERPRQGSVESPLLSFFNCVLGVWNKNMTEFRFRIGKASTLYKSLLQGEIQNPEISNSLTFRASSTEVVLGWNFEPNQEWVFRQAIIALGKDLIDARSFLDILVSRTLVAED-ADGLQFLQEERIQITEITTVSFVGYVTVIVLSVILLFLKTCFRNSFAALLGVENICVDITTYNGLLELLQ 441          
BLAST of Gcaud973.t1 vs. uniprot
Match: A0A2V3IPL9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL9_9FLOR)

HSP 1 Score: 246 bits (629), Expect = 2.180e-72
Identity = 158/451 (35.03%), Postives = 250/451 (55.43%), Query Frame = 0
Query:    4 IPVDSKYVNAVVYVVADVLAFNVLQNVT-NSIQSFLSKRHLRRGQRVSLRTSWFSMFAPGIHPGGNFLYIRLLIKHIVLPGILFVLTFGINGNATSAPRPATRKYITRLAVTENDFDWSRLNSHMFSRCV--IGYGNELRYFPTAFDVVSNAELDDYFDFRDREGNRVGIDASSMLCQSFSNRSTLLHVTKCGEVMEECDNLDPSPPARIMLVRSNETEHRPWKIDSVQRQFGSGQG---IALMRVNVRVLSNEVSEI-YDRLICRERPVDGSRLSPLNIWLDCILGVWNENGSSFKFRVGYASVAFQRWSEIFNSSLQTSVT-FYAMSTEIEVLWNVSKNSETAFMEALNLV-EDRVAARPFLDLLFSRAVVASDVTSGM---SIYESKTITVTEVAYPAAKGYGVVVSIALVIFLASTFLSAPLTRLFGVHQVA--IDVTSYSGLVKVV 440
            IP++SKYVNAVV+++ D+L F ++   +   +Q+  ++R L+RG RV LR S F+ F PGI   G      L++ +++L  ++F+LT  ING      +  +R+YIT LA    D++ +RL+  +FS CV      + + Y+PTAF+ + N  + D   FR+++G  V ID+ S  CQSF N  +LL + +CG+ M EC N++ S    + ++        PW+  SV+R    G G   + L   NV+ +   ++   Y+RLIC +RP+ GSR S   +W  C+LG W++    F FRVG ASV+F RW +         VT F  M+TE  + W+ +   E A + AL  V ED V+AR FLD L +RA++A +V++      ++E     VT++    A GY V        FL +T  +      F V +    +D+TSYSG+++++
Sbjct:    4 IPIESKYVNAVVFLIVDLLCFMIIIGSSLQKVQARYTRRRLQRGYRVHLRESRFAHFLPGILKDGLRRTRLLILSYLLLVLVVFLLTLTINGETEVMQKTISRQYITALAAAPFDYNSARLHPSVFSHCVETSTTTSSVTYYPTAFNTIENQTIFDRMAFRNKQGEPVPIDSESKQCQSFQNVPSLLTIPRCGKDMHECSNVEESDMFLLQILSKKNDIEDPWQ--SVKRLTTRGSGEDSLVLFHANVKPIRPVLATTPYNRLICLQRPLRGSRFSGAAVWFTCVLGTWSQFADRFTFRVGVASVSFLRWEDSLRQKFIPDVTAFQIMTTEAVLPWSYTTGGEDAIVNALVPVSEDTVSARSFLDGLVARALIAQEVSATPYKGQLFEPIEQAVTKIQAVGAWGYAV--------FLFATVATLAFRGWFLVTRPGGQLDITSYSGMLQLL 444          
BLAST of Gcaud973.t1 vs. uniprot
Match: A0A2V3INE1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INE1_9FLOR)

HSP 1 Score: 187 bits (476), Expect = 1.050e-49
Identity = 141/444 (31.76%), Postives = 227/444 (51.13%), Query Frame = 0
Query:    1 MIIIPVDSKYVNAVVYVVADVLAFNVLQNVTNSIQSFLSKRHLRRGQRVSLRTSWFSMFAPGIHPGGNFLYIRLLIKHIVLPGILFVLTFGINGNATSAPRPATRKYITRLAVTENDF-DWSRLNSHMFSRCVIGYGNELRYFPTAFDVVSNA-ELDDYFDFRDREGNRVG--IDASSMLCQSFSNRSTLLHVTKCGEVMEECDNLDPSPPARIMLVRSNETEHRPWKIDSVQRQFGSGQGIALMRVNVRVLSNEVSEI-YDRLICRERPVDGSRLSPLNIWLDCILGVWNENGSSFKFRVGYASVAFQRWSEIFNSSLQTSVTFYAMSTEIEVLWNVSKNSETAFMEALNLVE-DRVAARPFLDLLFSRAVVASDVTSG-MSIYESKTITVTEVAYPAAKGYGVVVSIALVIFLASTFLSAPLTRLFGVHQVAIDVTSYSGLV 437
            M+ + VDS+++NA +Y++ DV+ F VL +   S+Q++  K  + +G  VS++      F+ G+   G  L    +  H++L  ILF LT G+NG +  A RP  R+YI+RL  ++       R+   + + C     ++L YF  AFD   N  EL D           VG  +D+ S+LCQ +     LL V KCG     C NL  + P  ++L R +  E + W+ + V   FGS    AL+R +VR +S++VS   Y+RLIC            L +  +C+LGVWNEN S+F+FR+G  S+  +  + I +++    V F A S EIE+ W+   N E      L+ +  + V AR FLD   SR+  +  V  G  ++YE   + VT+++     GYGV+  + L++   + ++     R     +   +V +Y GL+
Sbjct:    1 MVTLEVDSRFINAGIYIIVDVIIFAVLLSGIISLQTWYVKHRMFQGHDVSVQEFPLIAFSGGVVSDGTPLSFVFVGAHLLLMAILFSLTLGVNGRSDKAYRPTKREYISRLTPSDTPLVAEQRIYPQILASCNSFEKSQLMYFEVAFDSEENRMELTDGTAENQIGNESVGMAVDSESVLCQDYEEAKPLLRVLKCGVNRNACCNLYITQPQVLVLERGDGGE-QDWQRNGVAVWFGS---TALLRNSVRSVSSQVSTARYNRLICLSSQTGSLPSGELGMRTNCMLGVWNENKSAFRFRLGTISLTNKTRNSIMDTAEDRKVEFTAYSVEIEIEWDA--NEEKVLSNGLHSIGGNMVPARLFLDTFVSRS--SQSVALGNTAVYEKYEVLVTDISTACLVGYGVLTILGLIVGCLTLWMKC---RKKSDTEAIPEVNTYQGLL 433          
The following BLAST results are available for this feature:
BLAST of Gcaud973.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IKH5_9FLOR1.130e-7535.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IPL9_9FLOR2.180e-7235.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INE1_9FLOR1.050e-4931.76Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 416..506
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..394
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 395..415
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 396..418
NoneNo IPR availableTMHMMTMhelixcoord: 79..96
NoneNo IPR availableTMHMMTMhelixcoord: 53..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_367_length_28651_cov_5.344188contigNODE_367_length_28651_cov_5.344188:6225..7745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud973.t1Gcaud973.t1Gracilaria caudata M_176_S67 malemRNANODE_367_length_28651_cov_5.344188 6225..7745 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud973.t1 ID=Gcaud973.t1|Name=Gcaud973.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=507bp
MIIIPVDSKYVNAVVYVVADVLAFNVLQNVTNSIQSFLSKRHLRRGQRVS
LRTSWFSMFAPGIHPGGNFLYIRLLIKHIVLPGILFVLTFGINGNATSAP
RPATRKYITRLAVTENDFDWSRLNSHMFSRCVIGYGNELRYFPTAFDVVS
NAELDDYFDFRDREGNRVGIDASSMLCQSFSNRSTLLHVTKCGEVMEECD
NLDPSPPARIMLVRSNETEHRPWKIDSVQRQFGSGQGIALMRVNVRVLSN
EVSEIYDRLICRERPVDGSRLSPLNIWLDCILGVWNENGSSFKFRVGYAS
VAFQRWSEIFNSSLQTSVTFYAMSTEIEVLWNVSKNSETAFMEALNLVED
RVAARPFLDLLFSRAVVASDVTSGMSIYESKTITVTEVAYPAAKGYGVVV
SIALVIFLASTFLSAPLTRLFGVHQVAIDVTSYSGLVKVVKANESSDVDC
FDSDSSVETEVEFGITKENDGGCFRIRMVGEQDVVVPLPPAAQLSHHRGV
LWYHND*
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