Gcaud973.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud973.t1
Unique Name	Gcaud973.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_367_length_28651_cov_5.344188	contig	NODE_367_length_28651_cov_5.344188:6225..7745 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud973	Gcaud973	Gracilaria caudata M_176_S67 male	gene	NODE_367_length_28651_cov_5.344188 6225..7745 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud973.t1.start1	Gcaud973.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_367_length_28651_cov_5.344188 6225..6227 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud973.t1.CDS1	Gcaud973.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_367_length_28651_cov_5.344188 6225..7745 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud973.t1.exon1	Gcaud973.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_367_length_28651_cov_5.344188 6225..7745 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud973.t1.stop1	Gcaud973.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_367_length_28651_cov_5.344188 7743..7745 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud973.t1	Gcaud973.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_367_length_28651_cov_5.344188 6225..7745 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+
coding sequence from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+

mRNA sequence

>Gcaud973.t1 ID=Gcaud973.t1|Name=Gcaud973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp
MIIIPVDSKYVNAVVYVVADVLAFNVLQNVTNSIQSFLSKRHLRRGQRVS
LRTSWFSMFAPGIHPGGNFLYIRLLIKHIVLPGILFVLTFGINGNATSAP
RPATRKYITRLAVTENDFDWSRLNSHMFSRCVIGYGNELRYFPTAFDVVS
NAELDDYFDFRDREGNRVGIDASSMLCQSFSNRSTLLHVTKCGEVMEECD
NLDPSPPARIMLVRSNETEHRPWKIDSVQRQFGSGQGIALMRVNVRVLSN
EVSEIYDRLICRERPVDGSRLSPLNIWLDCILGVWNENGSSFKFRVGYAS
VAFQRWSEIFNSSLQTSVTFYAMSTEIEVLWNVSKNSETAFMEALNLVED
RVAARPFLDLLFSRAVVASDVTSGMSIYESKTITVTEVAYPAAKGYGVVV
SIALVIFLASTFLSAPLTRLFGVHQVAIDVTSYSGLVKVVKANESSDVDC
FDSDSSVETEVEFGITKENDGGCFRIRMVGEQDVVVPLPPAAQLSHHRGV
LWYHND*

spliced messenger RNA

>Gcaud973.t1 ID=Gcaud973.t1|Name=Gcaud973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCATTATTCCTGTTGACTCAAAGTATGTGAACGCCGTAGTTTACGT
CGTTGCTGACGTACTTGCGTTTAATGTCCTTCAGAATGTGACAAACTCCA
TACAGTCCTTCCTTTCGAAACGCCATCTACGTCGCGGACAGCGAGTCTCG
TTGCGTACATCTTGGTTTAGCATGTTTGCACCCGGAATTCATCCTGGTGG
AAACTTTCTGTACATTCGTTTGCTTATCAAGCACATCGTCCTTCCCGGGA
TTCTGTTCGTCTTGACCTTTGGAATCAATGGTAATGCAACCAGTGCACCT
CGTCCTGCTACTCGAAAATATATAACTCGCCTGGCTGTTACAGAGAACGA
CTTTGATTGGTCTCGTTTGAACTCTCACATGTTCTCAAGGTGTGTCATAG
GTTATGGGAACGAGTTGCGCTATTTCCCAACTGCGTTTGATGTCGTCAGT
AACGCGGAGCTGGATGACTACTTTGATTTTCGAGATCGAGAGGGTAATCG
CGTCGGAATTGATGCTTCTTCCATGCTTTGCCAGTCTTTCTCGAATAGAT
CGACGCTGTTACATGTCACAAAATGTGGGGAAGTAATGGAGGAGTGTGAC
AATCTAGATCCAAGCCCACCCGCAAGAATAATGCTTGTGAGAAGTAATGA
GACTGAGCATAGGCCATGGAAAATAGACTCCGTCCAAAGGCAGTTTGGAA
GCGGCCAAGGAATAGCTTTGATGCGCGTTAATGTTCGAGTCCTCTCTAAT
GAGGTTTCCGAAATCTATGACAGATTGATTTGTAGAGAGCGCCCCGTCGA
TGGCTCGCGGTTGTCACCTCTCAACATTTGGTTAGACTGCATCCTAGGTG
TGTGGAATGAGAACGGATCAAGTTTCAAATTTCGCGTCGGTTATGCTTCT
GTTGCGTTCCAACGATGGAGCGAGATATTCAATAGCAGCTTGCAAACATC
AGTTACGTTTTACGCGATGTCCACGGAGATTGAAGTGCTGTGGAATGTGA
GCAAGAACTCTGAAACAGCCTTCATGGAAGCACTTAATCTGGTAGAGGAT
CGCGTGGCTGCGCGCCCATTCCTCGACCTTCTTTTCAGCAGGGCTGTGGT
GGCTTCGGATGTGACTTCGGGAATGTCCATATATGAAAGCAAGACTATTA
CAGTCACGGAAGTAGCGTACCCCGCTGCAAAGGGCTATGGAGTGGTAGTG
AGCATCGCTCTGGTCATCTTCTTGGCAAGCACTTTCCTTTCTGCGCCGTT
GACACGACTGTTTGGCGTCCATCAGGTAGCAATAGATGTAACTTCATACA
GCGGTTTGGTCAAAGTTGTTAAAGCAAACGAAAGTTCAGATGTTGATTGC
TTCGATTCAGATAGCTCAGTCGAAACCGAAGTCGAGTTTGGAATCACAAA
GGAGAACGACGGAGGTTGTTTCAGGATCAGAATGGTTGGAGAACAGGATG
TCGTAGTGCCGCTTCCACCGGCGGCTCAGCTGAGTCATCATCGGGGAGTG
CTCTGGTATCACAATGATTGA

protein sequence of Gcaud973.t1

>Gcaud973.t1 ID=Gcaud973.t1|Name=Gcaud973.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=507bp
MIIIPVDSKYVNAVVYVVADVLAFNVLQNVTNSIQSFLSKRHLRRGQRVS
LRTSWFSMFAPGIHPGGNFLYIRLLIKHIVLPGILFVLTFGINGNATSAP
RPATRKYITRLAVTENDFDWSRLNSHMFSRCVIGYGNELRYFPTAFDVVS
NAELDDYFDFRDREGNRVGIDASSMLCQSFSNRSTLLHVTKCGEVMEECD
NLDPSPPARIMLVRSNETEHRPWKIDSVQRQFGSGQGIALMRVNVRVLSN
EVSEIYDRLICRERPVDGSRLSPLNIWLDCILGVWNENGSSFKFRVGYAS
VAFQRWSEIFNSSLQTSVTFYAMSTEIEVLWNVSKNSETAFMEALNLVED
RVAARPFLDLLFSRAVVASDVTSGMSIYESKTITVTEVAYPAAKGYGVVV
SIALVIFLASTFLSAPLTRLFGVHQVAIDVTSYSGLVKVVKANESSDVDC
FDSDSSVETEVEFGITKENDGGCFRIRMVGEQDVVVPLPPAAQLSHHRGV
LWYHND*

mRNA from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud973.t1 ID=Gcaud973.t1|Name=Gcaud973.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+ (Gracilaria caudata M_176_S67 male)
ATGATCATTATTCCTGTTGACTCAAAGTATGTGAACGCCGTAGTTTACGT
CGTTGCTGACGTACTTGCGTTTAATGTCCTTCAGAATGTGACAAACTCCA
TACAGTCCTTCCTTTCGAAACGCCATCTACGTCGCGGACAGCGAGTCTCG
TTGCGTACATCTTGGTTTAGCATGTTTGCACCCGGAATTCATCCTGGTGG
AAACTTTCTGTACATTCGTTTGCTTATCAAGCACATCGTCCTTCCCGGGA
TTCTGTTCGTCTTGACCTTTGGAATCAATGGTAATGCAACCAGTGCACCT
CGTCCTGCTACTCGAAAATATATAACTCGCCTGGCTGTTACAGAGAACGA
CTTTGATTGGTCTCGTTTGAACTCTCACATGTTCTCAAGGTGTGTCATAG
GTTATGGGAACGAGTTGCGCTATTTCCCAACTGCGTTTGATGTCGTCAGT
AACGCGGAGCTGGATGACTACTTTGATTTTCGAGATCGAGAGGGTAATCG
CGTCGGAATTGATGCTTCTTCCATGCTTTGCCAGTCTTTCTCGAATAGAT
CGACGCTGTTACATGTCACAAAATGTGGGGAAGTAATGGAGGAGTGTGAC
AATCTAGATCCAAGCCCACCCGCAAGAATAATGCTTGTGAGAAGTAATGA
GACTGAGCATAGGCCATGGAAAATAGACTCCGTCCAAAGGCAGTTTGGAA
GCGGCCAAGGAATAGCTTTGATGCGCGTTAATGTTCGAGTCCTCTCTAAT
GAGGTTTCCGAAATCTATGACAGATTGATTTGTAGAGAGCGCCCCGTCGA
TGGCTCGCGGTTGTCACCTCTCAACATTTGGTTAGACTGCATCCTAGGTG
TGTGGAATGAGAACGGATCAAGTTTCAAATTTCGCGTCGGTTATGCTTCT
GTTGCGTTCCAACGATGGAGCGAGATATTCAATAGCAGCTTGCAAACATC
AGTTACGTTTTACGCGATGTCCACGGAGATTGAAGTGCTGTGGAATGTGA
GCAAGAACTCTGAAACAGCCTTCATGGAAGCACTTAATCTGGTAGAGGAT
CGCGTGGCTGCGCGCCCATTCCTCGACCTTCTTTTCAGCAGGGCTGTGGT
GGCTTCGGATGTGACTTCGGGAATGTCCATATATGAAAGCAAGACTATTA
CAGTCACGGAAGTAGCGTACCCCGCTGCAAAGGGCTATGGAGTGGTAGTG
AGCATCGCTCTGGTCATCTTCTTGGCAAGCACTTTCCTTTCTGCGCCGTT
GACACGACTGTTTGGCGTCCATCAGGTAGCAATAGATGTAACTTCATACA
GCGGTTTGGTCAAAGTTGTTAAAGCAAACGAAAGTTCAGATGTTGATTGC
TTCGATTCAGATAGCTCAGTCGAAACCGAAGTCGAGTTTGGAATCACAAA
GGAGAACGACGGAGGTTGTTTCAGGATCAGAATGGTTGGAGAACAGGATG
TCGTAGTGCCGCTTCCACCGGCGGCTCAGCTGAGTCATCATCGGGGAGTG
CTCTGGTATCACAATGATTGA

Coding sequence (CDS) from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+

>Gcaud973.t1 ID=Gcaud973.t1|Name=Gcaud973.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1521bp|location=Sequence derived from alignment at NODE_367_length_28651_cov_5.344188:6225..7745+ (Gracilaria caudata M_176_S67 male)
ATGATCATTATTCCTGTTGACTCAAAGTATGTGAACGCCGTAGTTTACGT
CGTTGCTGACGTACTTGCGTTTAATGTCCTTCAGAATGTGACAAACTCCA
TACAGTCCTTCCTTTCGAAACGCCATCTACGTCGCGGACAGCGAGTCTCG
TTGCGTACATCTTGGTTTAGCATGTTTGCACCCGGAATTCATCCTGGTGG
AAACTTTCTGTACATTCGTTTGCTTATCAAGCACATCGTCCTTCCCGGGA
TTCTGTTCGTCTTGACCTTTGGAATCAATGGTAATGCAACCAGTGCACCT
CGTCCTGCTACTCGAAAATATATAACTCGCCTGGCTGTTACAGAGAACGA
CTTTGATTGGTCTCGTTTGAACTCTCACATGTTCTCAAGGTGTGTCATAG
GTTATGGGAACGAGTTGCGCTATTTCCCAACTGCGTTTGATGTCGTCAGT
AACGCGGAGCTGGATGACTACTTTGATTTTCGAGATCGAGAGGGTAATCG
CGTCGGAATTGATGCTTCTTCCATGCTTTGCCAGTCTTTCTCGAATAGAT
CGACGCTGTTACATGTCACAAAATGTGGGGAAGTAATGGAGGAGTGTGAC
AATCTAGATCCAAGCCCACCCGCAAGAATAATGCTTGTGAGAAGTAATGA
GACTGAGCATAGGCCATGGAAAATAGACTCCGTCCAAAGGCAGTTTGGAA
GCGGCCAAGGAATAGCTTTGATGCGCGTTAATGTTCGAGTCCTCTCTAAT
GAGGTTTCCGAAATCTATGACAGATTGATTTGTAGAGAGCGCCCCGTCGA
TGGCTCGCGGTTGTCACCTCTCAACATTTGGTTAGACTGCATCCTAGGTG
TGTGGAATGAGAACGGATCAAGTTTCAAATTTCGCGTCGGTTATGCTTCT
GTTGCGTTCCAACGATGGAGCGAGATATTCAATAGCAGCTTGCAAACATC
AGTTACGTTTTACGCGATGTCCACGGAGATTGAAGTGCTGTGGAATGTGA
GCAAGAACTCTGAAACAGCCTTCATGGAAGCACTTAATCTGGTAGAGGAT
CGCGTGGCTGCGCGCCCATTCCTCGACCTTCTTTTCAGCAGGGCTGTGGT
GGCTTCGGATGTGACTTCGGGAATGTCCATATATGAAAGCAAGACTATTA
CAGTCACGGAAGTAGCGTACCCCGCTGCAAAGGGCTATGGAGTGGTAGTG
AGCATCGCTCTGGTCATCTTCTTGGCAAGCACTTTCCTTTCTGCGCCGTT
GACACGACTGTTTGGCGTCCATCAGGTAGCAATAGATGTAACTTCATACA
GCGGTTTGGTCAAAGTTGTTAAAGCAAACGAAAGTTCAGATGTTGATTGC
TTCGATTCAGATAGCTCAGTCGAAACCGAAGTCGAGTTTGGAATCACAAA
GGAGAACGACGGAGGTTGTTTCAGGATCAGAATGGTTGGAGAACAGGATG
TCGTAGTGCCGCTTCCACCGGCGGCTCAGCTGAGTCATCATCGGGGAGTG
CTCTGGTATCACAATGATTGA