Gcaud9580.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9580.t1
Unique NameGcaud9580.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length140
Homology
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BLAST of Gcaud9580.t1 vs. uniprot
Match: A0A2V3IE23_9FLOR (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE23_9FLOR)

HSP 1 Score: 94.7 bits (234), Expect = 6.400e-20
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:   49 SRCFRIQTADRSTESK--------KKDSDNVMFMYKREDGLKGLAELSTGEEVHSWHDEMERTLGGAKGYNYRSLVDGLREDRESCSKLIETVHNALA 138
            S+C  +  A R + +K        + + D  MF YK EDGLKGLAE+ST EE H WHDEMER L  A    YR++V+GLR DR++C  L+ETV NA A
Sbjct:   41 SQCSTLSPASRISAAKEAEPHTPVRNEEDKKMFEYKGEDGLKGLAEVSTAEEFHIWHDEMERRLEEANEEKYRTMVNGLRNDRKACLALMETVENASA 138
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BLAST of Gcaud9580.t1 vs. uniprot
Match: R7QGJ3_CHOCR (Transmembrane 9 superfamily member n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGJ3_CHOCR)

HSP 1 Score: 68.6 bits (166), Expect = 8.580e-11
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 0 
Query:    1 MMALALTASLVVVLFRTVRRDCARFELSASDLIDDFNDDIDNDIGWMASR 50
            M+AL LTASL VVLFRT+RRDCAR+ ++  +++DDFNDD DND+GW   R
Sbjct:  243 MLALFLTASLAVVLFRTLRRDCARYGIAPGEIMDDFNDDFDNDVGWRMLR 292
The following BLAST results are available for this feature:
BLAST of Gcaud9580.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IE23_9FLOR6.400e-2050.00Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
R7QGJ3_CHOCR8.580e-1164.00Transmembrane 9 superfamily member n=1 Tax=Chondru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_247_length_34315_cov_4.656002contigNODE_247_length_34315_cov_4.656002:32311..32882 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9580.t1Gcaud9580.t1Gracilaria caudata M_176_S67 malemRNANODE_247_length_34315_cov_4.656002 32311..32882 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9580.t1 ID=Gcaud9580.t1|Name=Gcaud9580.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=140bp
MMALALTASLVVVLFRTVRRDCARFELSASDLIDDFNDDIDNDIGWMASR
CFRIQTADRSTESKKKDSDNVMFMYKREDGLKGLAELSTGEEVHSWHDEM
ERTLGGAKGYNYRSLVDGLREDRESCSKLIETVHNALAL*
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