Gcaud9494.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9494.t1
Unique NameGcaud9494.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length162
Homology
BLAST of Gcaud9494.t1 vs. uniprot
Match: A0A2V3J5X6_9FLOR (L-lactate dehydrogenase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5X6_9FLOR)

HSP 1 Score: 205 bits (521), Expect = 8.630e-63
Identity = 116/191 (60.73%), Postives = 140/191 (73.30%), Query Frame = 0
Query:    1 MGRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLT-----------------------------ALAQRARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPLRAVSTD 162
            MGRVG AIA+A++RR  ATHL LIDV  +RA+SEALDL D +  L+P+ +THS+E+SA+  S++I ITAGARQRP ESRL LLGRNV+ILSS +P  VKLSP+A+ +VVSNPCDVLT                             AL++RA +AA EV+AVIIGEHGDSSVAAWSIATISGLPLRA+STD
Sbjct:   20 MGRVGTAIANAIARRGTATHLALIDVQPNRAQSEALDLQDTIPFLNPLQLTHSTEISASKGSHIIIITAGARQRPGESRLDLLGRNVSILSSIIPPAVKLSPNAVFLVVSNPCDVLTYVAARLAGEKAAHRVIGSGTNLDSARLVSALSRRADIAAREVNAVIIGEHGDSSVAAWSIATISGLPLRAISTD 210          
BLAST of Gcaud9494.t1 vs. uniprot
Match: A0A0D2VW96_CAPO3 (L-lactate dehydrogenase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VW96_CAPO3)

HSP 1 Score: 132 bits (332), Expect = 1.780e-34
Identity = 80/187 (42.78%), Postives = 113/187 (60.43%), Query Frame = 0
Query:    1 MGRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLT----------------------------ALAQRARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPLRAV 159
            +G+VG A A A+  + +A+ + L+DVVA + + E +DL   +AL+  + I+ S++ + T++S+L  ITAGARQR  ESRL L GRNVAI  + +P LVK SP+ IL+VVSNP D+LT                             LA++  +A   VHA IIGEHGDSSV  WS   ++G+PLR+V
Sbjct:   35 VGQVGIACAYAILLQNIASEIALVDVVADKLKGEMMDLQHGLALMKNVKISASTDYAVTANSDLCIITAGARQREGESRLDLCGRNVAIFKNIIPNLVKNSPNTILLVVSNPVDILTWVTWKLSGLPSSRVIGSGTTLDSSRFRVLLAEKLGIAPRSVHANIIGEHGDSSVPVWSGVHVAGVPLRSV 221          
BLAST of Gcaud9494.t1 vs. uniprot
Match: UPI001ABCC118 (L-lactate dehydrogenase n=1 Tax=Microbacterium stercoris TaxID=2820289 RepID=UPI001ABCC118)

HSP 1 Score: 128 bits (321), Expect = 4.990e-33
Identity = 78/183 (42.62%), Postives = 102/183 (55.74%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALAQ----------------------------RARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPL 156
            G VGAA A A   R  A H+ L D+ A++ E+E LDL+          IT S++++ T  S+++ +TAGA Q+P ++RLQL+G N  I S  +P+LV+ SP A+ V+VSNPCDVLT LAQ                            RA VAA  VHA I GEHGDS    WS ATI  +PL
Sbjct:   15 GAVGAATAYASLIRGAARHVALYDINAAKVEAEVLDLAHGSLFTGTSDITGSADVAVTEGSHVVIVTAGAAQQPGQTRLQLVGTNARIFSKMIPELVEASPKAVFVIVSNPCDVLTVLAQEQTGLPPERLFASGTVLDTSRLRWRLAERAGVAASSVHANIAGEHGDSQFPMWSTATIGSVPL 197          
BLAST of Gcaud9494.t1 vs. uniprot
Match: UPI001666B034 (L-lactate dehydrogenase n=1 Tax=Microbacterium album TaxID=2053191 RepID=UPI001666B034)

HSP 1 Score: 128 bits (321), Expect = 5.100e-33
Identity = 78/183 (42.62%), Postives = 107/183 (58.47%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALAQ----------------------------RARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPL 156
            G VGAA A A   R  A H+VL D+ A+R E+EALDL+         ++T S+++ AT+DS+++ +TAGA QRP ++RL+L+  N  I  + +P+LV+ SP A+ V+V+NPCDVLT LAQ                            RA VAA  VHA I+GEHGD+    WS ATI  +PL
Sbjct:   15 GAVGAATAYASLIRGAARHVVLHDIDAARVEAEALDLAHGSLFTGSSTVTGSADVDATADSHVVVVTAGAPQRPGQTRLELIDTNARIFRTMMPRLVEASPGAVFVIVTNPCDVLTLLAQQQTGLPAERLFASGTVLDTSRLRWRLAERAGVAASSVHAHIVGEHGDTEFPLWSSATIGPVPL 197          
BLAST of Gcaud9494.t1 vs. uniprot
Match: A0A0Y0PG72_9MICO (L-lactate dehydrogenase n=1 Tax=Microterricola viridarii TaxID=412690 RepID=A0A0Y0PG72_9MICO)

HSP 1 Score: 126 bits (317), Expect = 1.910e-32
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALAQR----------------------------ARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPLRA 158
            G VG+++A A   R  A  +VL D+  ++ E+E LDL+       P SI+  S++  T+DS+++ ITAGA+Q+P ++RL+L G NV IL + +PQLV LSP+A+ ++V+NPCDVLTA+A+R                            A VA   VH +I+GEHGD+    WS ATI   PL A
Sbjct:   15 GSVGSSLAYAALIRNSAREVVLYDIATAKVEAEVLDLAHGTPFAGPSSISGGSDIDLTADSDVVVITAGAKQQPGQTRLELAGVNVRILEAMLPQLVALSPNAVFILVTNPCDVLTAVAERITDLPKGRIFSSGTVLDSARLRWLVAEAAGVAPQSVHTLIVGEHGDTEFPLWSAATIGQTPLSA 199          
BLAST of Gcaud9494.t1 vs. uniprot
Match: UPI001C8EDAFE (L-lactate dehydrogenase n=1 Tax=Microbacterium marinilacus TaxID=415209 RepID=UPI001C8EDAFE)

HSP 1 Score: 126 bits (317), Expect = 1.950e-32
Identity = 76/183 (41.53%), Postives = 103/183 (56.28%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALAQ----------------------------RARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPL 156
            G VGAA A A   R +A H+ L D+ A++ E+E LDL+          I  SS+++ T  S+++ +TAGA Q+P ++RL+L+G N  I  S +PQLV+ SP A+ V+VSNPCDVLT LAQ                            RA VAA  +HA I+GEHGD+    WS ATI  +PL
Sbjct:   15 GAVGAATAYASLIRGVARHVALYDINAAKVEAETLDLAHGSLFTGSSQIEGSSDIAVTEGSHVVIVTAGAAQQPGQTRLELVGTNARIFRSMIPQLVEASPQAVFVIVSNPCDVLTLLAQEQTSLPPERLFASGTVLDTSRLRWQLAQRAGVAASSIHAHIVGEHGDTEFPLWSTATIGPVPL 197          
BLAST of Gcaud9494.t1 vs. uniprot
Match: UPI001C8AFE9E (L-lactate dehydrogenase n=1 Tax=Microbacterium sp. G2-8 TaxID=2842454 RepID=UPI001C8AFE9E)

HSP 1 Score: 126 bits (316), Expect = 2.740e-32
Identity = 78/183 (42.62%), Postives = 105/183 (57.38%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALA----------------------------QRARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPL 156
            G VG+A A A   R  A ++VL D+ A+R E+EALDL+         S+  SS ++ TS S+++ +TAGA Q+P ++RL+L+G N  I S+ +PQLV+ SPDAI V+V+NPCDVLT LA                            +RA VAA  VHA I GEHGD+    WS A I  +PL
Sbjct:   15 GSVGSATAYATLIRGAARNVVLYDINAARVEAEALDLAHGAMFTGSSSVVGSSNVADTSGSHVVIVTAGAAQKPGQTRLELIGTNARIFSTMIPQLVEASPDAIFVIVTNPCDVLTMLAVEQTGIDPARMFASGCVLDTSRLRWRLAERAGVAARSVHAHIAGEHGDTEFPLWSSAAIGPVPL 197          
BLAST of Gcaud9494.t1 vs. uniprot
Match: UPI0011A6B36F (L-lactate dehydrogenase n=1 Tax=Kocuria palustris TaxID=71999 RepID=UPI0011A6B36F)

HSP 1 Score: 125 bits (313), Expect = 7.160e-32
Identity = 74/183 (40.44%), Postives = 100/183 (54.64%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTA----------------------------LAQRARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPL 156
            G VG+++A A   R  A H+ L D+ A + E+E LDLS          I   S++S T DS+++ ITAGA+QRP ++RL L   N  IL S +PQL++ SPDA+ V+V+NPCD +T                             LAQ A V+   VHA I+GEHGDS  A WS ATI  +P+
Sbjct:   13 GAVGSSVAYAAMIRGSARHIALYDIAAEKTEAEVLDLSHGTQFAAGTDIIGGSDISVTEDSDIVVITAGAKQRPGQTRLDLAATNAGILGSLMPQLLEASPDAVYVIVTNPCDPMTTVAQQLSGLPPERIFASGTVLDTSRLRWLLAQHAGVSTTSVHAHIVGEHGDSEFALWSTATIGTVPI 195          
BLAST of Gcaud9494.t1 vs. uniprot
Match: A0A6D1I9I8_9MICO (L-lactate dehydrogenase n=4 Tax=Microbacterium TaxID=33882 RepID=A0A6D1I9I8_9MICO)

HSP 1 Score: 124 bits (312), Expect = 1.050e-31
Identity = 73/183 (39.89%), Postives = 104/183 (56.83%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALA----------------------------QRARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPL 156
            G VGA++A A   R  A H+ L D+ A + ++E LDL+          I   S++S  + S+++ ITAGA+Q+P ++R++L G N  IL S +PQL++++PDAI V+V+NPCDVLT LA                            QRA VA   VHA I+GEHGD+  A WS ATI  +P+
Sbjct:   15 GSVGASVAYAALIRGSARHVALYDIAAQKVDAEVLDLAHGTQFTGSSDIIGGSDISVAAGSHVVVITAGAKQKPGQTRIELAGVNAGILRSMMPQLLEVAPDAIYVIVTNPCDVLTVLAREATNLPPERIFSSGTVLDTSRLRWKLAQRAGVATSNVHAYIVGEHGDTEFALWSRATIGTVPI 197          
BLAST of Gcaud9494.t1 vs. uniprot
Match: A0A0Q6XXN2_9MICO (L-lactate dehydrogenase n=2 Tax=Microbacteriaceae TaxID=85023 RepID=A0A0Q6XXN2_9MICO)

HSP 1 Score: 124 bits (312), Expect = 1.050e-31
Identity = 75/189 (39.68%), Postives = 109/189 (57.67%), Query Frame = 0
Query:    2 GRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSITHSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKLSPDAILVVVSNPCDVLTALAQR----------------------------ARVAAGEVHAVIIGEHGDSSVAAWSIATISGLPLRAVSTD 162
            G VG+++A A   R  A  +VL D+  ++AE+E LDL+          IT  S++   +DS+++ ITAGA+Q P ++RL+L G NV IL + +PQLV L+P+A+ ++V+NPCDVLTA+A+R                            A++A   VHA+I+GEHGDS    WS ATI   PL A + D
Sbjct:   15 GSVGSSLAYAALIRGSAREVVLYDIDTAKAEAEVLDLAHGTPFTGASRITGGSDIELVADSDVVVITAGAKQEPGQTRLELAGVNVRILEAMLPQLVALAPNAVFILVTNPCDVLTAVAERITELPPGRIFSSGTVLDSARLRWLVAEAAQIAPQSVHALIVGEHGDSEFPLWSSATIGQTPLGAWTDD 203          
The following BLAST results are available for this feature:
BLAST of Gcaud9494.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5X6_9FLOR8.630e-6360.73L-lactate dehydrogenase n=1 Tax=Gracilariopsis cho... [more]
A0A0D2VW96_CAPO31.780e-3442.78L-lactate dehydrogenase n=1 Tax=Capsaspora owczarz... [more]
UPI001ABCC1184.990e-3342.62L-lactate dehydrogenase n=1 Tax=Microbacterium ste... [more]
UPI001666B0345.100e-3342.62L-lactate dehydrogenase n=1 Tax=Microbacterium alb... [more]
A0A0Y0PG72_9MICO1.910e-3240.54L-lactate dehydrogenase n=1 Tax=Microterricola vir... [more]
UPI001C8EDAFE1.950e-3241.53L-lactate dehydrogenase n=1 Tax=Microbacterium mar... [more]
UPI001C8AFE9E2.740e-3242.62L-lactate dehydrogenase n=1 Tax=Microbacterium sp.... [more]
UPI0011A6B36F7.160e-3240.44L-lactate dehydrogenase n=1 Tax=Kocuria palustris ... [more]
A0A6D1I9I8_9MICO1.050e-3139.89L-lactate dehydrogenase n=4 Tax=Microbacterium Tax... [more]
A0A0Q6XXN2_9MICO1.050e-3139.68L-lactate dehydrogenase n=2 Tax=Microbacteriaceae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001557L-lactate/malate dehydrogenasePRINTSPR00086LLDHDRGNASEcoord: 107..127
score: 36.12
coord: 20..44
score: 31.29
IPR001236Lactate/malate dehydrogenase, N-terminalPFAMPF00056Ldh_1_Ncoord: 2..122
e-value: 2.9E-27
score: 95.5
NoneNo IPR availableGENE3D3.40.50.720coord: 1..134
e-value: 1.7E-36
score: 127.3
NoneNo IPR availablePANTHERPTHR43128:SF16L-LACTATE DEHYDROGENASEcoord: 118..159
coord: 1..122
NoneNo IPR availablePANTHERPTHR43128L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))coord: 118..159
coord: 1..122
IPR018177L-lactate dehydrogenase, active sitePROSITEPS00064L_LDHcoord: 135..141
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 2..122
IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalSUPERFAMILY56327LDH C-terminal domain-likecoord: 117..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1494_length_10218_cov_4.581614contigNODE_1494_length_10218_cov_4.581614:2..574 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9494.t1Gcaud9494.t1Gracilaria caudata M_176_S67 malemRNANODE_1494_length_10218_cov_4.581614 2..574 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9494.t1 ID=Gcaud9494.t1|Name=Gcaud9494.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=162bp
MGRVGAAIADAVSRRALATHLVLIDVVASRAESEALDLSDAMALLHPMSI
THSSEMSATSDSNLIFITAGARQRPQESRLQLLGRNVAILSSFVPQLVKL
SPDAILVVVSNPCDVLTALAQRARVAAGEVHAVIIGEHGDSSVAAWSIAT
ISGLPLRAVSTD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001557L-lactate/malate_DH
IPR001236Lactate/malate_DH_N
IPR018177L-lactate_DH_AS
IPR036291NAD(P)-bd_dom_sf
IPR015955Lactate_DH/Glyco_Ohase_4_C