Gcaud9418.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9418.t1
Unique NameGcaud9418.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length502
Homology
BLAST of Gcaud9418.t1 vs. uniprot
Match: A0A2V3IKH5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKH5_9FLOR)

HSP 1 Score: 436 bits (1120), Expect = 2.770e-145
Identity = 223/444 (50.23%), Postives = 308/444 (69.37%), Query Frame = 0
Query:    1 MIVVQVDSRFVNAAIYVVIDVFCFSVISFELRELQTSLTKYRLRCGQHVALRESTLSCLAGGALADGTPLFPSLTLLHVILLSLLFVLTLGVSGSTTNVLRPASRVYVTRLATNGLQDVVRSRHNPKFFVGCVERE------KASLNYYPTAFNVKGNVTITDFYAFTDDNETVASVDINGMICQKYGNMPPLMNVIRCGETDVQCSNLNVSDFVNVYVRKENDFKFETVGSGYSLLGAYMEVKSDAKHVWDTEYDRLICLEEARRGNSGSPLGAFFNCVLGKWNEEQTVFRFRVGKGLLPYSPRFREDLQNTSVSSTFAFRASSEEVVLSWNRQENGEWIFIQAVKPFGKDSVDARSFLDSMISRTVVAEKADGISLLEEETVPATEIEIFSLVGYIAVLGLSTLFMIGRIARVNIISRLLRIENICVDITSFNGLLSIFQSS 438
            MI +++DSRFVNAAIY+V+DV C  ++  EL+ +Q+  TK RLR G+ + L+ + +S LAGGAL D TPLF  L +L+++LL + F LTLGVSG+T +V+RPASR YVTRLA  G +D VR+R NP FF GCV+ +        S  YYPTAF+V G+  I D Y FTD++  V SVD++ M+CQK+GNM PL+ V RCG+T  QCSN+ V++F+ + V+ E+  +FET+GSGY LL  Y+ V  + +  W + Y+R+IC+E  R+G+  SPL +FFNCVLG WN+  T FRFR+GK    Y    + ++QN  +S++  FRASS EVVL WN + N EW+F QA+   GKD +DARSFLD ++SRT+VAE ADG+  L+EE +  TEI   S VGY+ V+ LS + +  +    N  + LL +ENICVDIT++NGLL + Q +
Sbjct:    1 MISLELDSRFVNAAIYIVVDVTCSVILISELQAIQSISTKLRLRQGKSINLQHTNMSVLAGGALKDDTPLFSILVMLNLLLLGVFFFLTLGVSGTTKDVVRPASRRYVTRLAVTGDEDPVRTRLNPTFFSGCVQSDGDGMENATSFRYYPTAFDVIGDARIKDLYTFTDESSAVVSVDVHNMLCQKHGNMKPLLLVKRCGKTKGQCSNMYVTEFIGLSVQNESS-RFETIGSGYGLLVGYLTVTINVESRWASGYNRMICIERPRQGSVESPLLSFFNCVLGVWNKNMTEFRFRIGKASTLYKSLLQGEIQNPEISNSLTFRASSTEVVLGWNFEPNQEWVFRQAIIALGKDLIDARSFLDILVSRTLVAEDADGLQFLQEERIQITEITTVSFVGYVTVIVLSVILLFLKTCFRNSFAALLGVENICVDITTYNGLLELLQKA 443          
BLAST of Gcaud9418.t1 vs. uniprot
Match: A0A2V3IPL9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL9_9FLOR)

HSP 1 Score: 205 bits (522), Expect = 8.760e-57
Identity = 144/455 (31.65%), Postives = 230/455 (50.55%), Query Frame = 0
Query:    4 VQVDSRFVNAAIYVVIDVFCFSVI-SFELRELQTSLTKYRLRCGQHVALRESTLSCLAGGALADGTPLFPSLTLLHVILLSLLFVLTLGVSGSTTNVLRPASRVYVTRLATNGLQDVVRSRHNPKFFVGCVEREK--ASLNYYPTAFNVKGNVTITDFYAFTDDNETVASVDINGMICQKYGNMPPLMNVIRCGETDVQCSNLNVSD-FVNVYVRKENDF--------KFETVGSGY-SLLGAYMEVKSDAKHVWDTEYDRLICLEEARRGNSGSPLGAFFNCVLGKWNEEQTVFRFRVGKGLLPYSPRFREDLQNTSVSSTFAFRASSEEVVLSWNRQENGEWIFIQAVKPFGKDSVDARSFLDSMISRTVVAEKADGI----SLLEEETVPATEIEIFSLVGY-------IAVLGLSTLFMIGRIARVNIISRLLRIENICVDITSFNGLLSI 434
            + ++S++VNA +++++D+ CF +I    L+++Q   T+ RL+ G  V LRES  +    G L DG      L L +++L+ ++F+LTL ++G T  + +  SR Y+T LA     D   +R +P  F  CVE     +S+ YYPTAFN   N TI D  AF +       +D     CQ + N+P L+ + RCG+   +CSN+  SD F+   + K+ND         +  T GSG  SL+  +  VK     +  T Y+RLICL+   RG+  S    +F CVLG W++    F FRVG   + +  R+ + L+   +    AF+  + E VL W+    GE   + A+ P  +D+V ARSFLD +++R ++A++         L E      T+I+     GY       +A L     F++ R                 +DITS++G+L +
Sbjct:    4 IPIESKYVNAVVFLIVDLLCFMIIIGSSLQKVQARYTRRRLQRGYRVHLRESRFAHFLPGILKDGLRRTRLLILSYLLLVLVVFLLTLTINGETEVMQKTISRQYITALAAAPF-DYNSARLHPSVFSHCVETSTTTSSVTYYPTAFNTIENQTIFDRMAFRNKQGEPVPIDSESKQCQSFQNVPSLLTIPRCGKDMHECSNVEESDMFLLQILSKKNDIEDPWQSVKRLTTRGSGEDSLVLFHANVKPIRPVLATTPYNRLICLQRPLRGSRFSGAAVWFTCVLGTWSQFADRFTFRVGVASVSFL-RWEDSLRQKFIPDVTAFQIMTTEAVLPWSYTTGGEDAIVNALVPVSEDTVSARSFLDGLVARALIAQEVSATPYKGQLFEPIEQAVTKIQAVGAWGYAVFLFATVATLAFRGWFLVTRPGGQ-------------LDITSYSGMLQL 443          
BLAST of Gcaud9418.t1 vs. uniprot
Match: A0A2V3INE1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INE1_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 2.480e-53
Identity = 131/407 (32.19%), Postives = 210/407 (51.60%), Query Frame = 0
Query:    1 MIVVQVDSRFVNAAIYVVIDVFCFSVISFELRELQTSLTKYRLRCGQHVALRESTLSCLAGGALADGTPLFPSLTLLHVILLSLLFVLTLGVSGSTTNVLRPASRVYVTRLATNGLQDVVRSRHNPKFFVGCVEREKASLNYYPTAFNVKGN-VTITDFYAFTD-DNETVA-SVDINGMICQKYGNMPPLMNVIRCGETDVQCSNLNVSDFVNVYVRK----ENDFKFETVGSGYSLLGAYME-VKSDAKHVWDTEYDRLICLEEARRGNSGSPLGAFFNCVLGKWNEEQTVFRFRVGKGLLPYSPRFREDLQNTSVSSTFAFRASSEEVVLSWNRQENGEWIFIQAVKPFGKDSVDARSFLDSMISRTVVAEKADGISLLEEETVPATEIEIFSLVGY--IAVLGL 397
            M+ ++VDSRF+NA IY+++DV  F+V+   +  LQT   K+R+  G  V+++E  L   +GG ++DGTPL       H++L+++LF LTLGV+G +    RP  R Y++RL  +    V   R  P+    C   EK+ L Y+  AF+ + N + +TD  A     NE+V  +VD   ++CQ Y    PL+ V++CG     C NL ++    + + +    E D++   V   +         V+S +  V    Y+RLICL           LG   NC+LG WNE ++ FRFR+G   +  + + R  + +T+      F A S E+ + W+  E  E +    +   G + V AR FLD+ +SR+  +      ++ E+  V  T+I    LVGY  + +LGL
Sbjct:    1 MVTLEVDSRFINAGIYIIVDVIIFAVLLSGIISLQTWYVKHRMFQGHDVSVQEFPLIAFSGGVVSDGTPLSFVFVGAHLLLMAILFSLTLGVNGRSDKAYRPTKREYISRLTPSDTPLVAEQRIYPQILASCNSFEKSQLMYFEVAFDSEENRMELTDGTAENQIGNESVGMAVDSESVLCQDYEEAKPLLRVLKCGVNRNACCNLYITQPQVLVLERGDGGEQDWQRNGVAVWFGSTALLRNSVRSVSSQVSTARYNRLICLSSQTGSLPSGELGMRTNCMLGVWNENKSAFRFRLGT--ISLTNKTRNSIMDTAEDRKVEFTAYSVEIEIEWDANE--EKVLSNGLHSIGGNMVPARLFLDTFVSRSSQSVALGNTAVYEKYEVLVTDISTACLVGYGVLTILGL 403          
The following BLAST results are available for this feature:
BLAST of Gcaud9418.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IKH5_9FLOR2.770e-14550.23Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IPL9_9FLOR8.760e-5731.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3INE1_9FLOR2.480e-5332.19Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 13..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..92
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 385..407
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 93..384
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 408..501
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..12
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..73
NoneNo IPR availableTMHMMTMhelixcoord: 74..96
NoneNo IPR availableTMHMMTMhelixcoord: 9..31
NoneNo IPR availableTMHMMTMhelixcoord: 385..407

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_265_length_33019_cov_4.613399contigNODE_265_length_33019_cov_4.613399:26735..28240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9418.t1Gcaud9418.t1Gracilaria caudata M_176_S67 malemRNANODE_265_length_33019_cov_4.613399 26735..28240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9418.t1 ID=Gcaud9418.t1|Name=Gcaud9418.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=502bp
MIVVQVDSRFVNAAIYVVIDVFCFSVISFELRELQTSLTKYRLRCGQHVA
LRESTLSCLAGGALADGTPLFPSLTLLHVILLSLLFVLTLGVSGSTTNVL
RPASRVYVTRLATNGLQDVVRSRHNPKFFVGCVEREKASLNYYPTAFNVK
GNVTITDFYAFTDDNETVASVDINGMICQKYGNMPPLMNVIRCGETDVQC
SNLNVSDFVNVYVRKENDFKFETVGSGYSLLGAYMEVKSDAKHVWDTEYD
RLICLEEARRGNSGSPLGAFFNCVLGKWNEEQTVFRFRVGKGLLPYSPRF
REDLQNTSVSSTFAFRASSEEVVLSWNRQENGEWIFIQAVKPFGKDSVDA
RSFLDSMISRTVVAEKADGISLLEEETVPATEIEIFSLVGYIAVLGLSTL
FMIGRIARVNIISRLLRIENICVDITSFNGLLSIFQSSQEGCFRDAFQPH
IKFGVVRNEVNNFLAIGAVKDEDPNIPVSPATCLDCCQPRKKCGGQERAP
V*
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