Gcaud9261.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9261.t1
Unique NameGcaud9261.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Homology
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BLAST of Gcaud9261.t1 vs. uniprot
Match: A0A2V3IIW0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIW0_9FLOR)

HSP 1 Score: 174 bits (442), Expect = 2.690e-51
Identity = 116/205 (56.59%), Postives = 140/205 (68.29%), Query Frame = 0 
Query:    3 CSLCPPDSISDGKSCVPCPAGLRRDVDVCACRGVFAQNRGLVNGVCEVCPPGSYGQSLNVLEDHHCVQCPAGTFRDLENDSNLAACLLSSDKGCPDPAPCKKCPPDTFTREPGATQXXXXXXXXXXXXXXXXXXLRNGAVSEPVLFSDPLGISGDFIFESEESTEEPVPALDEMDGVPASPEPEESLAPELDPQITDSPIDFAAE 207
            CS CP D+ SDGK CV C  G  RD D CACRG  AQN+G+V+G C  CPPGSYG+S +V + + CVQ  AG+FR+LEND  LAAC +S +  CP   PC+ CPP+T  RE     XXXXXXXXXXXXXXXXXXLR G  SEPVLF+DP+G+  D   E EES++ PVP LDE D + +S EP ES  P+   +I  S  DF+ E
Sbjct:    2 CSTCPNDAASDGKFCVKCGNGFVRDGDECACRGALAQNKGIVDGFCRQCPPGSYGKSGDVFQQNTCVQXXAGSFRNLENDILLAACAMSGEASCPKAVPCQTCPPNTVAREXXXXXXXXXXXXXXXXXXXXXXXLREGGASEPVLFNDPIGLVDDQFDEVEESSQ-PVPDLDEND-MTSSTEPVESPLPQSIVEIEKSLPDFSEE 204
The following BLAST results are available for this feature:
BLAST of Gcaud9261.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IIW0_9FLOR2.690e-5156.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01411GCC2_GCC3_2coord: 95..136
e-value: 0.66
score: 18.6
coord: 42..88
e-value: 2.1
score: 14.1
NoneNo IPR availableGENE3D2.10.50.10Tumor Necrosis Factor Receptor, subunit A, domain 2coord: 51..128
e-value: 2.7E-9
score: 38.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..201
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 2..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1479_length_10340_cov_4.883306contigNODE_1479_length_10340_cov_4.883306:3199..3873 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9261.t1Gcaud9261.t1Gracilaria caudata M_176_S67 malemRNANODE_1479_length_10340_cov_4.883306 3199..3873 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9261.t1 ID=Gcaud9261.t1|Name=Gcaud9261.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MSCSLCPPDSISDGKSCVPCPAGLRRDVDVCACRGVFAQNRGLVNGVCEV
CPPGSYGQSLNVLEDHHCVQCPAGTFRDLENDSNLAACLLSSDKGCPDPA
PCKKCPPDTFTREPGATQCQPCPQGTFSYGLGETECLRNGAVSEPVLFSD
PLGISGDFIFESEESTEEPVPALDEMDGVPASPEPEESLAPELDPQITDS
PIDFAAETVLETGEELFESPGLFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009030Growth_fac_rcpt_cys_sf