Gcaud9238.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9238.t1
Unique NameGcaud9238.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length685
Homology
BLAST of Gcaud9238.t1 vs. uniprot
Match: A0A2V3J4R7_9FLOR (Homeobox protein Mix.2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4R7_9FLOR)

HSP 1 Score: 665 bits (1716), Expect = 1.410e-228
Identity = 405/704 (57.53%), Postives = 477/704 (67.76%), Query Frame = 0
Query:   30 KPHAQLLAVT--PSLPSYDKKRKGARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATDRRQGIDVTRNVTEELNA------STTFPNACAVVEETVLLPSHVLAHPTPQSSRSDATHKKDSHLPSSTPLTP------------DSRQLPSQSSAYVNVTPSSISWAPSIANTPANHFSPSPYPSNRFRISPLRIRHVCLSMGSEFLFGELPHNLLLDRGLEVKFLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMSLLMLSFSAMPALFLQTQQSMDKYKLRSQQRQYRKVSQVEFPVRADEPMHAILLRSDEAIRTVKILFEDTPRLLSVFQVYNDKPFPIQLPPSLHNIQNFPSSIPDTNMPMRSTPIALPSSLTQTATAATVPAPERASEIPV-----PHPV-------------TPA-VHRGRIQSPSSTIRR-PLSIHELSSRQDG---DSILEARQHASRLNGSSHGMQTRTMPVAVSKSDAAPTPKSSAAVT--NMHGT--AGNWQSPSTPYTCAPKPWLAARVHGGDTATPLTERINRADTPSNGNRVRRELNFNGYGQGETPLSTLHKRKASTLSGKENDERAHLRRKIVHHD--ANGSVRLLASGIPPPPLPPPLPAFPNEQALTQYTQNGTTHGEFEVVHSASALKNESERMTPKLPR 684
            K H Q L +T  P+LP+Y+KKRKGARIFSA+EK ILE NYAKNKFPSRLHMETLGKALGKG+EKVRTWYNNRRATDRRQGIDVTRN T++L        S+ FP+   +VEETVLLPSHVLAH  P + +   T    S  P +TP               DSR  P+ +S YVNVTPSSISWAPSIANTP  HFSP+ YPSNRFRISPLRIRHVC+S+ S FLFGELPHNL LDRGLEVKFLFGKKRVVYEWYYG D+S+AQ+TGGPYCKMEMNF++I  MQLFT   MS+L+LSFS MP LFLQTQQSMDKYKLRSQQRQYR+VS  EFP+   +  HAILLRSDEAIRTVKIL EDTPRL SV QV+N KPFPIQLPP L N+Q+  SS  DT +P+++ PIALPS   Q  TAA    P+++          PH +             TPA   R R  +P ST+RR PLSIHELSSR D    D+     Q  S ++   H  +T  M   VSK++A      SA+V   N H +  A +W+SP+TP+T       +    G   A PLTERIN  DTP+NG RVRRELNFNGYG G+T  S+ +KRKA+ + GKENDERA +RR+ VH +  A  +VRLLA+GIPP            E+   Q   NG  H + +    +SA K+E  R+  KLPR
Sbjct:  102 KHHPQSLPLTKLPALPAYEKKRKGARIFSAQEKDILEANYAKNKFPSRLHMETLGKALGKGSEKVRTWYNNRRATDRRQGIDVTRNATDDLTPTSSSFPSSPFPSPSPLVEETVLLPSHVLAHLQPTNVQ--PTPPSASPNPPTTPXXXXXXXXXXXXXXXDSR-FPTATSPYVNVTPSSISWAPSIANTPTTHFSPASYPSNRFRISPLRIRHVCISLASHFLFGELPHNLQLDRGLEVKFLFGKKRVVYEWYYGHDHSLAQTTGGPYCKMEMNFASICDMQLFTRPTMSMLILSFSLMPTLFLQTQQSMDKYKLRSQQRQYRRVSSSEFPIPVHQHNHAILLRSDEAIRTVKILLEDTPRLTSVLQVHNHKPFPIQLPPVLQNVQHLSSSASDTPLPVQTMPIALPSCSAQAVTAAKAQ-PQQSXXXXXXXALPPHALQKGAATISSMACSTPAGTSRSRTITPCSTVRRRPLSIHELSSRPDATPTDTGANDEQKRS-ISQVRHYAKTSVMKTTVSKNEALLKQSRSASVKAPNAHTSTPATSWRSPATPFTRTSTLVFSGGARGSCNAKPLTERINHRDTPTNGTRVRRELNFNGYGGGDTTTSSAYKRKANEMGGKENDERAVVRRRTVHVNGSAKANVRLLAAGIPPXXXXXXXXXSRKEEGAVQ---NGGQHADEKGATCSSAPKDEGGRLLQKLPR 797          
BLAST of Gcaud9238.t1 vs. uniprot
Match: R7QAF7_CHOCR (Homeobox domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAF7_CHOCR)

HSP 1 Score: 335 bits (859), Expect = 1.720e-101
Identity = 246/621 (39.61%), Postives = 340/621 (54.75%), Query Frame = 0
Query:   42 LPSYDKKRKGARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATDRRQGIDVTRNVTEELNAS--TTFPNACAVVEETVLLPSHVLAHP-TPQSSRSDATHKKDSHLPSSTPLTPDSRQLPSQSSAYVNVTPSSISWAPS---IANTPANHFSPS---PYPSNRFRISPLRIRHVCLSMGSEFLFGELPHNLLLDRGLEVKFLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMSLLMLSFSAMPALFLQTQQSMDKYKLRSQQRQYRKVSQVEFPVRADEPMHAILLRSDEAIRTVKILFEDTPRLLSVFQVYNDKPFPIQLPPSLHNIQNFPSSIPDTNMPMRSTPIALPSSLTQTATAATVPAPERASEIPVPHPV---TPAVHRGRI-------QSPSSTIRRPLSIHELSS---RQDGDSILEARQHASRLNGSSHGMQTRTMPVAVSKSDAAPTPKSSAAVTNMHGTAGNWQSPSTPYTCAPKP-------WLAARVHGGDTATPLTERINRADTPSNGNRVRRELNFNGYG----QGETPLSTLHKRKASTLSGKENDERAHLRRKIVHHDANGSVRLLAS 629
            L S   KRKGAR+FSA EK++LE NYA+NKFPSRLHM+T+G+ LGKGTEKVRTWYNNRRA DR+ GIDV+RN  +   A     FP A    EE V+LP + +A P TP +       +KD   P++T      + L  +S+ +VNVTPS+I+WAPS   +   P    +P+   P P NRFRI+PLRIR+  + MGS  + GE+  N   DRGLEVKFLFGKKR+VYEWY GED+  A+ TGGPY KMEMNFS+++++QLF   A+S L LSFS +P  +LQTQ+SMDK+K+R+QQRQYRKV+  EFP+R     H I +R+D+AIR  ++L E+ P L +  + +                        D ++ +R   +A PS      T  T    E+ S  P   PV   TP +    I       ++P   +  P  + +LS    + +   +  A   ++  +    G +   +P+        P   + AA +N+ G+   W SP+TP+  + +P       W    V    + TP  ER N    P +  +VRRELNFN       +  TP S   KRKA     K +D+  H R       A   +R ++S
Sbjct:   94 LSSQSDKRKGARVFSAPEKRVLEANYARNKFPSRLHMQTIGRTLGKGTEKVRTWYNNRRALDRKLGIDVSRNPADSPPAPPFALFPTADPS-EEPVVLPGYAIASPGTPSACNHAGKGEKDVPSPNNTV-----KGL-FESTIFVNVTPSAIAWAPSASPVTGRPCAGAAPASLQPQP-NRFRITPLRIRNSRVVMGSSEICGEIGDNPSADRGLEVKFLFGKKRIVYEWYCGEDFVQAKKTGGPYAKMEMNFSSVANIQLFRGGAVSALQLSFSEVPTTYLQTQESMDKFKVRAQQRQYRKVTADEFPIRVCVEQHRISMRTDDAIRVARVLIEENPHLAASSKAWEK----------------------DCSLAVR---VANPS------TEVTAFKIEKGSGSPTVDPVLVNTPQLEHVNISRLNICKRTPGEAMASPGVVGQLSQPFEQCNTPMVRSAEMVSASPSTQKDGKRESELPIV------RPITATGAA-SNLLGSPAPWPSPATPFIPSGRPRGRDIMQWSTGVVPLCASTTPFRERTNIPSAPRDTTKVRRELNFNALHHMPTEPRTPASKGRKRKAE--EAKLDDKDLHQRVNDTPRSAPKLIRRISS 666          
BLAST of Gcaud9238.t1 vs. uniprot
Match: A0A5J4Z9W5_PORPP (Homeobox domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9W5_PORPP)

HSP 1 Score: 77.8 bits (190), Expect = 2.700e-11
Identity = 86/306 (28.10%), Postives = 149/306 (48.69%), Query Frame = 0
Query:   49 RKGARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATD---RRQGI--DVTRNVTEELNASTTFPNACAVVEETVLLP-SHVLAHPTPQSS--RSDA-THKKDSHLPSSTPLTPDSRQLPSQSSAYVNVTPSSISWAPSIANTPANHFSPSPYPSNRFRISPLRIRHVCLSMGSEFLFGELPHNLLLDRG--LEVKFLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMSLLMLSFSAMPA---LFLQTQQSMDKYKLRSQQRQYRKVSQVEF 340
            +KG+  FS  E + +   +    +P +  +E+L  + GK   KVRTW+NNRRA     RRQ    D T + T   +   + P+  A +E T     S  L   +P ++   S+A +H+  +   S++ L  D+    SQ+ ++V+   S++  + S+    A         S+    + L +    L++GS++    L           LE+KFLFG++++ YE + G+D + A   GGPY  +++ FS+I S   F   A+  + L+    P      LQ Q + ++YK R++QR Y K +  +F
Sbjct:   48 KKGSSEFSPSELEGMARLFEACPYPKKDELESLAASFGKPLRKVRTWFNNRRAKQVRMRRQAASPDSTGSDTPRSDVGDS-PSRHATLESTAKRQDSFPLRSGSPSANVKTSEANSHRFQAQKNSASSLPLDTA---SQNESHVHDAASAVPPSESLRKRKAWRIDEQSSASSSKTPAALSLHRTKLAIGSKWACESLVQTFADKEWSTLEIKFLFGRRKLRYELFLGDDLASAMQKGGPYGAIDIKFSSIDSFS-FEEDALHYVYLNLVVNPRELEYLLQPQSNFEEYKNRTKQRLYEKENAGDF 348          
BLAST of Gcaud9238.t1 vs. uniprot
Match: A0A7S3ECA8_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECA8_9RHOD)

HSP 1 Score: 62.8 bits (151), Expect = 1.410e-6
Identity = 74/292 (25.34%), Postives = 117/292 (40.07%), Query Frame = 0
Query:   59 EKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATDRRQGIDVTRNVTEELNASTTFPNACAVVEETVLLPSHVLAHPTPQSSRSDATHKKDSHLPSST--------------PLTPDSRQL-PSQSSAYVNVTPSSISWAPS--IANTPANHFSPSPYPSNRFRISPLRIRHVCLSMGSEFLFGELPHN-LLLDRGLEVKFLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMSLLMLSFSAMPALFLQTQQSMDKYKLRSQQRQY 332
            E++IL+  + ++ +P R  +  L     K   KV+TW+NNRRA  RR                                                   + D H+PSST              P T D   + P  SS     TP++I+ +    I N       P   P       P  ++   LS+G+    G +  +   L  GLEVKFL+G++R+VYE+   E   +A   GGP+ K+++ F  I  + + T  A + + L+    P ++ Q   +   Y+ R +QRQY
Sbjct:  111 EQQILKETFRQDPYPPRKRLRELSDRFEKPLYKVKTWFNNRRAKVRRLAT----------------------------------------------ADRGDGHVPSSTVHREMVDENGGGKKPNTSDGSVVKPDLSSLGSPFTPANITTSTPLLIPNNRRQRLVPDKTPP------PTILKGSRLSVGNWTCAGSVGKDGEALGDGLEVKFLYGRRRIVYEFCSAESLDIALERGGPFSKVDVLFDNIEKLSVETKAANTGIRLTLKYDPDIYAQEPSNFAAYRSRKKQRQY 350          
The following BLAST results are available for this feature:
BLAST of Gcaud9238.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J4R7_9FLOR1.410e-22857.53Homeobox protein Mix.2 n=1 Tax=Gracilariopsis chor... [more]
R7QAF7_CHOCR1.720e-10139.61Homeobox domain-containing protein n=1 Tax=Chondru... [more]
A0A5J4Z9W5_PORPP2.700e-1128.10Homeobox domain-containing protein n=1 Tax=Porphyr... [more]
A0A7S3ECA8_9RHOD1.410e-625.34Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 48..110
e-value: 4.4E-9
score: 46.2
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 53..105
e-value: 4.9E-8
score: 32.7
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 46..106
score: 12.972858
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 49..106
e-value: 1.31518E-8
score: 49.5493
NoneNo IPR availableGENE3D1.10.10.60coord: 46..108
e-value: 1.0E-10
score: 43.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..533
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 467..481
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..533
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 293..314
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 315..684
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 40..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_384_length_27336_cov_4.346963contigNODE_384_length_27336_cov_4.346963:859..2913 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9238.t1Gcaud9238.t1Gracilaria caudata M_176_S67 malemRNANODE_384_length_27336_cov_4.346963 859..2913 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9238.t1 ID=Gcaud9238.t1|Name=Gcaud9238.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=685bp
MRRPPCRPPAPCASPASPPCSSPLTPNTVKPHAQLLAVTPSLPSYDKKRK
GARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRR
ATDRRQGIDVTRNVTEELNASTTFPNACAVVEETVLLPSHVLAHPTPQSS
RSDATHKKDSHLPSSTPLTPDSRQLPSQSSAYVNVTPSSISWAPSIANTP
ANHFSPSPYPSNRFRISPLRIRHVCLSMGSEFLFGELPHNLLLDRGLEVK
FLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMS
LLMLSFSAMPALFLQTQQSMDKYKLRSQQRQYRKVSQVEFPVRADEPMHA
ILLRSDEAIRTVKILFEDTPRLLSVFQVYNDKPFPIQLPPSLHNIQNFPS
SIPDTNMPMRSTPIALPSSLTQTATAATVPAPERASEIPVPHPVTPAVHR
GRIQSPSSTIRRPLSIHELSSRQDGDSILEARQHASRLNGSSHGMQTRTM
PVAVSKSDAAPTPKSSAAVTNMHGTAGNWQSPSTPYTCAPKPWLAARVHG
GDTATPLTERINRADTPSNGNRVRRELNFNGYGQGETPLSTLHKRKASTL
SGKENDERAHLRRKIVHHDANGSVRLLASGIPPPPLPPPLPAFPNEQALT
QYTQNGTTHGEFEVVHSASALKNESERMTPKLPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf