Gcaud9238.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9238.t1
Unique Name	Gcaud9238.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	685

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_384_length_27336_cov_4.346963	contig	NODE_384_length_27336_cov_4.346963:859..2913 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9238	Gcaud9238	Gracilaria caudata M_176_S67 male	gene	NODE_384_length_27336_cov_4.346963 859..2913 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9238.t1.stop1	Gcaud9238.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_384_length_27336_cov_4.346963 859..861 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9238.t1.CDS1	Gcaud9238.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_384_length_27336_cov_4.346963 859..2913 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9238.t1.exon1	Gcaud9238.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_384_length_27336_cov_4.346963 859..2913 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9238.t1.start1	Gcaud9238.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_384_length_27336_cov_4.346963 2911..2913 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9238.t1	Gcaud9238.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_384_length_27336_cov_4.346963 859..2913 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_384_length_27336_cov_4.346963:859..2913-
coding sequence from alignment at NODE_384_length_27336_cov_4.346963:859..2913-

mRNA sequence

>Gcaud9238.t1 ID=Gcaud9238.t1|Name=Gcaud9238.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=685bp
MRRPPCRPPAPCASPASPPCSSPLTPNTVKPHAQLLAVTPSLPSYDKKRK
GARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRR
ATDRRQGIDVTRNVTEELNASTTFPNACAVVEETVLLPSHVLAHPTPQSS
RSDATHKKDSHLPSSTPLTPDSRQLPSQSSAYVNVTPSSISWAPSIANTP
ANHFSPSPYPSNRFRISPLRIRHVCLSMGSEFLFGELPHNLLLDRGLEVK
FLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMS
LLMLSFSAMPALFLQTQQSMDKYKLRSQQRQYRKVSQVEFPVRADEPMHA
ILLRSDEAIRTVKILFEDTPRLLSVFQVYNDKPFPIQLPPSLHNIQNFPS
SIPDTNMPMRSTPIALPSSLTQTATAATVPAPERASEIPVPHPVTPAVHR
GRIQSPSSTIRRPLSIHELSSRQDGDSILEARQHASRLNGSSHGMQTRTM
PVAVSKSDAAPTPKSSAAVTNMHGTAGNWQSPSTPYTCAPKPWLAARVHG
GDTATPLTERINRADTPSNGNRVRRELNFNGYGQGETPLSTLHKRKASTL
SGKENDERAHLRRKIVHHDANGSVRLLASGIPPPPLPPPLPAFPNEQALT
QYTQNGTTHGEFEVVHSASALKNESERMTPKLPR*

spliced messenger RNA

>Gcaud9238.t1 ID=Gcaud9238.t1|Name=Gcaud9238.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_384_length_27336_cov_4.346963:859..2913- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGACCGCCCTGTCGACCGCCTGCGCCGTGCGCTTCGCCTGCTTC
GCCACCCTGTTCGTCGCCACTCACCCCGAATACTGTCAAGCCGCATGCAC
AGTTGCTCGCCGTCACCCCTTCTCTGCCGTCGTATGATAAGAAGCGCAAA
GGTGCTCGCATTTTTTCGGCCGAAGAAAAAAAGATCCTCGAGCTCAACTA
CGCCAAGAACAAGTTCCCCTCGCGCTTGCACATGGAGACATTGGGAAAGG
CGCTTGGAAAAGGCACTGAGAAGGTTCGAACCTGGTACAATAATCGCAGG
GCCACCGATAGAAGACAGGGCATTGATGTCACCAGAAATGTTACTGAGGA
GCTCAATGCATCCACTACTTTTCCCAATGCGTGTGCCGTCGTTGAGGAGA
CCGTGTTATTGCCGTCACACGTGCTGGCACATCCAACTCCACAATCTTCT
CGTTCAGATGCAACTCACAAAAAGGATTCTCATCTTCCTTCTTCCACTCC
ACTCACTCCCGATTCGCGACAACTGCCATCACAATCCTCTGCTTACGTCA
ATGTAACTCCTAGTTCCATTTCATGGGCGCCGTCTATCGCTAATACACCT
GCCAATCACTTCTCTCCCTCTCCCTATCCCTCAAACCGTTTTCGAATATC
GCCACTGAGAATTAGACATGTGTGCCTGTCCATGGGTTCAGAATTCCTCT
TCGGTGAGCTTCCTCACAATCTGTTATTGGATCGTGGACTCGAGGTCAAG
TTCCTGTTCGGCAAGAAGCGTGTCGTGTACGAGTGGTATTACGGCGAAGA
CTATTCCATGGCACAGTCTACAGGAGGGCCTTATTGTAAGATGGAGATGA
ACTTTTCTGCCATATCTTCAATGCAGTTGTTTACCAGCCAGGCAATGTCT
TTGCTTATGCTCTCGTTTTCAGCAATGCCGGCTCTTTTTCTGCAGACGCA
ACAGAGCATGGACAAATACAAGCTGCGTTCGCAACAACGGCAGTACCGCA
AGGTGTCTCAAGTCGAATTTCCAGTTCGAGCCGATGAACCGATGCACGCC
ATCTTACTTCGATCCGATGAGGCCATTCGCACGGTCAAAATCCTTTTCGA
AGATACCCCCCGCTTACTTTCTGTATTCCAAGTCTACAATGACAAACCTT
TCCCTATTCAACTTCCGCCCTCCTTACACAACATTCAAAACTTTCCTTCC
TCAATACCGGACACCAATATGCCGATGCGAAGTACGCCAATTGCGCTACC
GTCATCTTTAACACAAACGGCTACAGCAGCAACAGTACCAGCCCCGGAAC
GCGCTTCGGAGATTCCGGTACCGCACCCGGTAACACCCGCTGTCCACCGC
GGAAGGATCCAATCACCGTCTTCAACCATTCGTCGCCCACTTTCGATTCA
CGAACTTTCGTCCCGACAAGATGGCGACTCAATACTCGAAGCGCGCCAGC
ATGCCAGTCGCTTGAATGGAAGCTCTCACGGCATGCAAACAAGAACCATG
CCAGTAGCCGTTTCGAAATCGGATGCGGCACCGACACCGAAATCGTCGGC
TGCAGTGACAAACATGCACGGCACTGCTGGCAATTGGCAGTCTCCATCAA
CGCCCTACACATGCGCCCCCAAACCATGGCTTGCCGCCCGTGTACATGGC
GGTGACACCGCTACGCCGTTGACCGAACGAATCAATCGAGCTGATACGCC
CAGCAACGGTAACCGCGTTCGAAGAGAGCTGAATTTTAACGGTTATGGAC
AAGGGGAGACGCCTCTATCCACGCTACACAAACGCAAAGCAAGCACACTG
AGCGGGAAGGAAAACGACGAAAGAGCTCACTTGCGTCGAAAAATTGTGCA
TCACGACGCGAATGGGAGTGTAAGACTGTTGGCGAGTGGAATTCCTCCAC
CGCCTTTACCACCGCCTTTGCCCGCGTTTCCGAATGAACAGGCATTGACA
CAGTACACTCAGAACGGAACGACACATGGGGAGTTTGAGGTGGTGCACTC
TGCGTCGGCGCTAAAGAATGAAAGCGAGCGAATGACGCCAAAACTTCCGC
GGTAG

protein sequence of Gcaud9238.t1

>Gcaud9238.t1 ID=Gcaud9238.t1|Name=Gcaud9238.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=685bp
MRRPPCRPPAPCASPASPPCSSPLTPNTVKPHAQLLAVTPSLPSYDKKRK
GARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRR
ATDRRQGIDVTRNVTEELNASTTFPNACAVVEETVLLPSHVLAHPTPQSS
RSDATHKKDSHLPSSTPLTPDSRQLPSQSSAYVNVTPSSISWAPSIANTP
ANHFSPSPYPSNRFRISPLRIRHVCLSMGSEFLFGELPHNLLLDRGLEVK
FLFGKKRVVYEWYYGEDYSMAQSTGGPYCKMEMNFSAISSMQLFTSQAMS
LLMLSFSAMPALFLQTQQSMDKYKLRSQQRQYRKVSQVEFPVRADEPMHA
ILLRSDEAIRTVKILFEDTPRLLSVFQVYNDKPFPIQLPPSLHNIQNFPS
SIPDTNMPMRSTPIALPSSLTQTATAATVPAPERASEIPVPHPVTPAVHR
GRIQSPSSTIRRPLSIHELSSRQDGDSILEARQHASRLNGSSHGMQTRTM
PVAVSKSDAAPTPKSSAAVTNMHGTAGNWQSPSTPYTCAPKPWLAARVHG
GDTATPLTERINRADTPSNGNRVRRELNFNGYGQGETPLSTLHKRKASTL
SGKENDERAHLRRKIVHHDANGSVRLLASGIPPPPLPPPLPAFPNEQALT
QYTQNGTTHGEFEVVHSASALKNESERMTPKLPR*

mRNA from alignment at NODE_384_length_27336_cov_4.346963:859..2913-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9238.t1 ID=Gcaud9238.t1|Name=Gcaud9238.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_384_length_27336_cov_4.346963:859..2913- (Gracilaria caudata M_176_S67 male)
ATGCGCAGACCGCCCTGTCGACCGCCTGCGCCGTGCGCTTCGCCTGCTTC
GCCACCCTGTTCGTCGCCACTCACCCCGAATACTGTCAAGCCGCATGCAC
AGTTGCTCGCCGTCACCCCTTCTCTGCCGTCGTATGATAAGAAGCGCAAA
GGTGCTCGCATTTTTTCGGCCGAAGAAAAAAAGATCCTCGAGCTCAACTA
CGCCAAGAACAAGTTCCCCTCGCGCTTGCACATGGAGACATTGGGAAAGG
CGCTTGGAAAAGGCACTGAGAAGGTTCGAACCTGGTACAATAATCGCAGG
GCCACCGATAGAAGACAGGGCATTGATGTCACCAGAAATGTTACTGAGGA
GCTCAATGCATCCACTACTTTTCCCAATGCGTGTGCCGTCGTTGAGGAGA
CCGTGTTATTGCCGTCACACGTGCTGGCACATCCAACTCCACAATCTTCT
CGTTCAGATGCAACTCACAAAAAGGATTCTCATCTTCCTTCTTCCACTCC
ACTCACTCCCGATTCGCGACAACTGCCATCACAATCCTCTGCTTACGTCA
ATGTAACTCCTAGTTCCATTTCATGGGCGCCGTCTATCGCTAATACACCT
GCCAATCACTTCTCTCCCTCTCCCTATCCCTCAAACCGTTTTCGAATATC
GCCACTGAGAATTAGACATGTGTGCCTGTCCATGGGTTCAGAATTCCTCT
TCGGTGAGCTTCCTCACAATCTGTTATTGGATCGTGGACTCGAGGTCAAG
TTCCTGTTCGGCAAGAAGCGTGTCGTGTACGAGTGGTATTACGGCGAAGA
CTATTCCATGGCACAGTCTACAGGAGGGCCTTATTGTAAGATGGAGATGA
ACTTTTCTGCCATATCTTCAATGCAGTTGTTTACCAGCCAGGCAATGTCT
TTGCTTATGCTCTCGTTTTCAGCAATGCCGGCTCTTTTTCTGCAGACGCA
ACAGAGCATGGACAAATACAAGCTGCGTTCGCAACAACGGCAGTACCGCA
AGGTGTCTCAAGTCGAATTTCCAGTTCGAGCCGATGAACCGATGCACGCC
ATCTTACTTCGATCCGATGAGGCCATTCGCACGGTCAAAATCCTTTTCGA
AGATACCCCCCGCTTACTTTCTGTATTCCAAGTCTACAATGACAAACCTT
TCCCTATTCAACTTCCGCCCTCCTTACACAACATTCAAAACTTTCCTTCC
TCAATACCGGACACCAATATGCCGATGCGAAGTACGCCAATTGCGCTACC
GTCATCTTTAACACAAACGGCTACAGCAGCAACAGTACCAGCCCCGGAAC
GCGCTTCGGAGATTCCGGTACCGCACCCGGTAACACCCGCTGTCCACCGC
GGAAGGATCCAATCACCGTCTTCAACCATTCGTCGCCCACTTTCGATTCA
CGAACTTTCGTCCCGACAAGATGGCGACTCAATACTCGAAGCGCGCCAGC
ATGCCAGTCGCTTGAATGGAAGCTCTCACGGCATGCAAACAAGAACCATG
CCAGTAGCCGTTTCGAAATCGGATGCGGCACCGACACCGAAATCGTCGGC
TGCAGTGACAAACATGCACGGCACTGCTGGCAATTGGCAGTCTCCATCAA
CGCCCTACACATGCGCCCCCAAACCATGGCTTGCCGCCCGTGTACATGGC
GGTGACACCGCTACGCCGTTGACCGAACGAATCAATCGAGCTGATACGCC
CAGCAACGGTAACCGCGTTCGAAGAGAGCTGAATTTTAACGGTTATGGAC
AAGGGGAGACGCCTCTATCCACGCTACACAAACGCAAAGCAAGCACACTG
AGCGGGAAGGAAAACGACGAAAGAGCTCACTTGCGTCGAAAAATTGTGCA
TCACGACGCGAATGGGAGTGTAAGACTGTTGGCGAGTGGAATTCCTCCAC
CGCCTTTACCACCGCCTTTGCCCGCGTTTCCGAATGAACAGGCATTGACA
CAGTACACTCAGAACGGAACGACACATGGGGAGTTTGAGGTGGTGCACTC
TGCGTCGGCGCTAAAGAATGAAAGCGAGCGAATGACGCCAAAACTTCCGC
GGTAG

Coding sequence (CDS) from alignment at NODE_384_length_27336_cov_4.346963:859..2913-

>Gcaud9238.t1 ID=Gcaud9238.t1|Name=Gcaud9238.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2055bp|location=Sequence derived from alignment at NODE_384_length_27336_cov_4.346963:859..2913- (Gracilaria caudata M_176_S67 male)
ATGCGCAGACCGCCCTGTCGACCGCCTGCGCCGTGCGCTTCGCCTGCTTC
GCCACCCTGTTCGTCGCCACTCACCCCGAATACTGTCAAGCCGCATGCAC
AGTTGCTCGCCGTCACCCCTTCTCTGCCGTCGTATGATAAGAAGCGCAAA
GGTGCTCGCATTTTTTCGGCCGAAGAAAAAAAGATCCTCGAGCTCAACTA
CGCCAAGAACAAGTTCCCCTCGCGCTTGCACATGGAGACATTGGGAAAGG
CGCTTGGAAAAGGCACTGAGAAGGTTCGAACCTGGTACAATAATCGCAGG
GCCACCGATAGAAGACAGGGCATTGATGTCACCAGAAATGTTACTGAGGA
GCTCAATGCATCCACTACTTTTCCCAATGCGTGTGCCGTCGTTGAGGAGA
CCGTGTTATTGCCGTCACACGTGCTGGCACATCCAACTCCACAATCTTCT
CGTTCAGATGCAACTCACAAAAAGGATTCTCATCTTCCTTCTTCCACTCC
ACTCACTCCCGATTCGCGACAACTGCCATCACAATCCTCTGCTTACGTCA
ATGTAACTCCTAGTTCCATTTCATGGGCGCCGTCTATCGCTAATACACCT
GCCAATCACTTCTCTCCCTCTCCCTATCCCTCAAACCGTTTTCGAATATC
GCCACTGAGAATTAGACATGTGTGCCTGTCCATGGGTTCAGAATTCCTCT
TCGGTGAGCTTCCTCACAATCTGTTATTGGATCGTGGACTCGAGGTCAAG
TTCCTGTTCGGCAAGAAGCGTGTCGTGTACGAGTGGTATTACGGCGAAGA
CTATTCCATGGCACAGTCTACAGGAGGGCCTTATTGTAAGATGGAGATGA
ACTTTTCTGCCATATCTTCAATGCAGTTGTTTACCAGCCAGGCAATGTCT
TTGCTTATGCTCTCGTTTTCAGCAATGCCGGCTCTTTTTCTGCAGACGCA
ACAGAGCATGGACAAATACAAGCTGCGTTCGCAACAACGGCAGTACCGCA
AGGTGTCTCAAGTCGAATTTCCAGTTCGAGCCGATGAACCGATGCACGCC
ATCTTACTTCGATCCGATGAGGCCATTCGCACGGTCAAAATCCTTTTCGA
AGATACCCCCCGCTTACTTTCTGTATTCCAAGTCTACAATGACAAACCTT
TCCCTATTCAACTTCCGCCCTCCTTACACAACATTCAAAACTTTCCTTCC
TCAATACCGGACACCAATATGCCGATGCGAAGTACGCCAATTGCGCTACC
GTCATCTTTAACACAAACGGCTACAGCAGCAACAGTACCAGCCCCGGAAC
GCGCTTCGGAGATTCCGGTACCGCACCCGGTAACACCCGCTGTCCACCGC
GGAAGGATCCAATCACCGTCTTCAACCATTCGTCGCCCACTTTCGATTCA
CGAACTTTCGTCCCGACAAGATGGCGACTCAATACTCGAAGCGCGCCAGC
ATGCCAGTCGCTTGAATGGAAGCTCTCACGGCATGCAAACAAGAACCATG
CCAGTAGCCGTTTCGAAATCGGATGCGGCACCGACACCGAAATCGTCGGC
TGCAGTGACAAACATGCACGGCACTGCTGGCAATTGGCAGTCTCCATCAA
CGCCCTACACATGCGCCCCCAAACCATGGCTTGCCGCCCGTGTACATGGC
GGTGACACCGCTACGCCGTTGACCGAACGAATCAATCGAGCTGATACGCC
CAGCAACGGTAACCGCGTTCGAAGAGAGCTGAATTTTAACGGTTATGGAC
AAGGGGAGACGCCTCTATCCACGCTACACAAACGCAAAGCAAGCACACTG
AGCGGGAAGGAAAACGACGAAAGAGCTCACTTGCGTCGAAAAATTGTGCA
TCACGACGCGAATGGGAGTGTAAGACTGTTGGCGAGTGGAATTCCTCCAC
CGCCTTTACCACCGCCTTTGCCCGCGTTTCCGAATGAACAGGCATTGACA
CAGTACACTCAGAACGGAACGACACATGGGGAGTTTGAGGTGGTGCACTC
TGCGTCGGCGCTAAAGAATGAAAGCGAGCGAATGACGCCAAAACTTCCGC
GGTAG