Gcaud9174.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9174.t1
Unique NameGcaud9174.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length391
Homology
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BLAST of Gcaud9174.t1 vs. uniprot
Match: A0A2V3J6L1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6L1_9FLOR)

HSP 1 Score: 449 bits (1156), Expect = 1.540e-154
Identity = 227/316 (71.84%), Postives = 270/316 (85.44%), Query Frame = 0 
Query:   37 LFRGNKRGNTLSFFVIVPTYLSALLLIVCMLAVLSLFIHRLLTAPDLA-GANDELILTFIALGALAYSGLLGCDRRRRNVAVKLASIPCFGNGEHSSSHQLLAVEKTPMLCFAPQFIAPQEAPVMEQVSEDASPSHSPSSTD--RHSKSAGIKKSTFLEISCRTAHTWVFGRPKRQAWPLNVVRTYRTVGKRFVLIKDQTVQDGAGSVLLSPTFLLSNELDKLMIARAVHEAMYRSAPCILHSVHDKFEASLLDRFSQLPAVICMLTGDLRQQVQKRSSRAYTSTERCYLTEVLWAIIVVEILDYLQRKRRDMPVL 349
            +FRGNKRGN+LSFFVIVPTY+SA L +  +L++L+LF+HRL+T P LA  ++ +++L+F+++ AL+YSGLLG DRRRRNVAV LA +PCFGNG+HSSSHQLLAVEK+PMLCFAPQFIAP    V    + + S    PSS D  R + + GI K+TFLEISCRTAHTW+FGRPKRQAWPLNV+RTYRT+GKRFVLIKDQTVQDGAGSVLL+PTFL S+ELDKL IAR VHEAMYRSAPCILHSV DKF A+L  RF+QLPA+ICMLTGDLR QVQKRSSR  T+ ERCY+TE+LWAI+VVE+LDYLQ KRRD+P+L
Sbjct:    1 MFRGNKRGNSLSFFVIVPTYVSATLTLCSVLSILALFVHRLVTDPSLALVSSSDIVLSFLSILALSYSGLLGHDRRRRNVAVLLAKLPCFGNGDHSSSHQLLAVEKSPMLCFAPQFIAPHT--VSFDRNTEPSNGSQPSSLDNPRVTSTVGITKNTFLEISCRTAHTWLFGRPKRQAWPLNVLRTYRTIGKRFVLIKDQTVQDGAGSVLLTPTFLQSHELDKLRIARVVHEAMYRSAPCILHSVTDKFHAALFHRFAQLPAIICMLTGDLRHQVQKRSSRPCTNAERCYVTEMLWAIVVVEVLDYLQHKRRDLPML 314
The following BLAST results are available for this feature:
BLAST of Gcaud9174.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6L1_9FLOR1.540e-15471.84Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 348..370
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..347
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..89
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 371..390
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..78
NoneNo IPR availableTMHMMTMhelixcoord: 90..108
NoneNo IPR availableTMHMMTMhelixcoord: 48..70
NoneNo IPR availableTMHMMTMhelixcoord: 15..35
NoneNo IPR availableTMHMMTMhelixcoord: 348..370

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_526_length_22991_cov_4.374716contigNODE_526_length_22991_cov_4.374716:15907..17291 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9174.t1Gcaud9174.t1Gracilaria caudata M_176_S67 malemRNANODE_526_length_22991_cov_4.374716 15907..17291 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9174.t1 ID=Gcaud9174.t1|Name=Gcaud9174.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=391bp
MAPLLTEGQLRPLQHANGWLSLLLLATVILHLFFARLFRGNKRGNTLSFF
VIVPTYLSALLLIVCMLAVLSLFIHRLLTAPDLAGANDELILTFIALGAL
AYSGLLGCDRRRRNVAVKLASIPCFGNGEHSSSHQLLAVEKTPMLCFAPQ
FIAPQEAPVMEQVSEDASPSHSPSSTDRHSKSAGIKKSTFLEISCRTAHT
WVFGRPKRQAWPLNVVRTYRTVGKRFVLIKDQTVQDGAGSVLLSPTFLLS
NELDKLMIARAVHEAMYRSAPCILHSVHDKFEASLLDRFSQLPAVICMLT
GDLRQQVQKRSSRAYTSTERCYLTEVLWAIIVVEILDYLQRKRRDMPVLT
PGGIVASGFYALVIPNAVVITHFRTRVVAVNAHVCVAVRE*
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