Gcaud9163.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9163.t1
Unique NameGcaud9163.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length361
Homology
BLAST of Gcaud9163.t1 vs. uniprot
Match: A0A2V3IUE7_9FLOR (Putative assembly chaperone of rpl4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUE7_9FLOR)

HSP 1 Score: 412 bits (1060), Expect = 7.610e-141
Identity = 220/350 (62.86%), Postives = 270/350 (77.14%), Query Frame = 0
Query:    1 MSPVPRKARHSRRSRAKSARRVKQNTLQLSNPISVDALVRDAKTCEANGQLQDAISKLERAVTLKPDDAGFYEELATLYMQETRSEXXXXXXXXXXXXXXXDGFEKYNYLAQLLGDTEEAVLSARKGIELIKMELTSIDKSQEARTQELREFQASAHCSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGVSEQESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVLVAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLLAVTHWKRRQPSEARECLAQTRSILERSDGYEGELEEEMIDKLYEELEKIS 350
            MSP  +  +H+RR  ++S RR K+  L+ S  +SV+ L+RDA+  EA+G +Q           L+  DA  YEELA+LYMQ TRS+                GFEKY YLAQLLG+TEEAV  ARKG ELI+ ++ S+DKSQ  R QELR++QASAHC+ AEI LGVIEESNDPALA+++DVEVE EIMEALA+S EG  SEQE+LIALANLRLSQGR  DA++AMVRVL  MS GL +LE+++I+D V+V AME LP MEIRIA+GKQLMEV +WAEAE+VLSSVMYECDFNVEVWYLLA+THWKR+Q SEARECL QTR+IL R DGY+GEL+++M+D+LYEEL+ IS
Sbjct:    1 MSPGQKHTQHARRYASRSTRR-KKKALKQSPTVSVEDLLRDARVHEASGNIQXXXXXXXXXXXLRSTDAALYEELASLYMQATRSDDADRALRIAISLQPESGFEKYAYLAQLLGNTEEAVSYARKGTELIRADIMSLDKSQHDRIQELRQYQASAHCATAEICLGVIEESNDPALAERMDVEVENEIMEALALSTEGSDSEQEALIALANLRLSQGREFDAKDAMVRVLGRMSDGLSMLEREDIADDVIVIAMESLPAMEIRIAVGKQLMEVKMWAEAESVLSSVMYECDFNVEVWYLLAITHWKRKQLSEARECLEQTRAILRRPDGYDGELDDDMVDRLYEELDTIS 349          
BLAST of Gcaud9163.t1 vs. uniprot
Match: R7QGX6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGX6_CHOCR)

HSP 1 Score: 267 bits (683), Expect = 5.660e-85
Identity = 142/255 (55.69%), Postives = 187/255 (73.33%), Query Frame = 0
Query:  103 GFEKYNYLAQLLGDTEEAVLSARKGIELIKMELTSIDKSQE-ARTQELREFQASAHCSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGVSEQESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVLVAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLLAVTHWKRRQPSEARECLAQTRSILERSDGYEGELEEEMIDKLYEELEKISGDPNKG 356
            GFEKY YLAQLLG+TEE +  AR+GIE+IK E  SID   E  R  EL++++ASAHC++AEI LG+IE+SND  +A KLDVEVEK +M A+ +S EG  SE E++++LANLRLSQGR  DA E+M RVL  MS GL++LE  + SD ++  A+ +LP +E RIA+GKQL+EV +W  A   LSSVM+ECDFNVEVWYLLAV +WK  +  EA+  L  TR++L   DG++GEL+E MI KL ++L + +G    G
Sbjct:   13 GFEKYAYLAQLLGNTEEGLQMARRGIEVIKAESRSIDSEMEHERIMELQQYEASAHCAIAEICLGIIEDSNDQEVATKLDVEVEKSVMAAIGLSEEGSESEVEAMLSLANLRLSQGRRDDAVESMKRVLLRMSPGLEMLETGDQSDVIIAEALSRLPSLEFRIAVGKQLIEVEMWRAAIVNLSSVMWECDFNVEVWYLLAVAYWKLGEFKEAQSVLISTRAVLRSPDGFDGELDEAMIGKLEQQLVRGAGPGKAG 267          
BLAST of Gcaud9163.t1 vs. uniprot
Match: A0A7S4B8P0_CHRCT (Hypothetical protein n=3 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8P0_CHRCT)

HSP 1 Score: 82.0 bits (201), Expect = 8.110e-14
Identity = 73/275 (26.55%), Postives = 132/275 (48.00%), Query Frame = 0
Query:   35 VDALVRDAKTCEANGQLQDAISKLERAVTLKPDDAGFYEELATLYMQETRSEXXXXXXXXXXXXXXXDGFEKYNYLAQLLGDTEEAVLSARKGIELIKMELTSIDKSQEARTQELREFQASAH------CSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGVSEQ---ESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVLVAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLL 300
            V ALV +A+ C    + ++AI    RAV ++P D     E     +Q  + E                   +Y YL QL  + E+A+   ++GI+ ++ E  +++ +  ++    RE+ A+ +      C+ AEI+L    + +D         E++ E +   A+ +  G+ +Q   E    +A+LRLSQ R  DA   + + L+             I++++  +A +  P +E+R A+ K LMEVG+ AEA  +L  +  E D ++E+WYL+
Sbjct:   20 VAALVEEARACTEKLERENAIELYRRAVQIQPSDPALLAEFGEAALQAGQVEDAKVALQRSIELSPDGTASRYMYLGQL-AEGEKALGWFQQGIQRLRSERAALEGAGGSKDDLRREWLAATNALAAGLCAEAEIYLTDACDEDD--------AEMKCEALATEALLLVSGIDKQTLPEPYQTMASLRLSQQRPEDAEALLAKALS-------------ITESLEGSAQQ--PSLEMRTALSKLLMEVGMSAEALDLLQELRLEDDESLELWYLV 270          
BLAST of Gcaud9163.t1 vs. uniprot
Match: G2Q2B7_MYCTT (Uncharacterized protein n=1 Tax=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) TaxID=573729 RepID=G2Q2B7_MYCTT)

HSP 1 Score: 60.5 bits (145), Expect = 1.730e-6
Identity = 75/278 (26.98%), Postives = 131/278 (47.12%), Query Frame = 0
Query:  103 GFEKYNYLAQLLGDT-EEAVLSARKGIELIKMELTSIDKSQEAR-----TQEL-----REFQASAHCSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGVSEQESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVLVAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLLAVTHW-------KRRQPSEA----------RECLAQTRSILERSDGYEGELEEEMIDKLYEELEKISGD 352
            G EK+ +LAQL  +  +++V    +G  +++ ++ ++ +S E+R     TQE      R+  A   C+VAE+++       D +  +  +   E  + EA  ++ E   + Q     +AN+R+SQ R  +AREA+ R L   S    L  +D             +PP   R+++ + L+EVG+  EA  V   ++ E D +VEV YL     +        + QPS+A          R+ LAQ   + ++ + YE   +E + +   E LE I G+
Sbjct:  113 GAEKFLWLAQLSEEGGQDSVSWYERGAAVLRAQIQTLTESLESRPLTRDTQEAVIAEKRKRLAETLCAVAEVYM------TDLSWEEDAEQRCEALVTEATMLAPESAETWQT----VANVRISQTRTEEAREALKRSLGLWS---DLAPEDP-----------AVPPFPTRVSLVRLLIEVGMEKEAIDVTERLIAEDDRSVEVLYLGGYARYISGENLKTQGQPSDAETWKAFWRSSRKWLAQCLKVFKQEE-YE---DERLGEHAQELLESIKGE 362          
The following BLAST results are available for this feature:
BLAST of Gcaud9163.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IUE7_9FLOR7.610e-14162.86Putative assembly chaperone of rpl4 n=1 Tax=Gracil... [more]
R7QGX6_CHOCR5.660e-8555.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S4B8P0_CHRCT8.110e-1426.55Hypothetical protein n=3 Tax=Chrysotila carterae T... [more]
G2Q2B7_MYCTT1.730e-626.98Uncharacterized protein n=1 Tax=Myceliophthora the... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 294..327
e-value: 20.0
score: 12.4
coord: 35..68
e-value: 0.89
score: 18.6
coord: 69..102
e-value: 0.87
score: 18.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 69..102
score: 9.7649
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 22..157
e-value: 5.5E-15
score: 57.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 175..349
e-value: 4.4E-6
score: 28.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 34..321
NoneNo IPR availablePFAMPF14559TPR_19coord: 47..102
e-value: 9.1E-6
score: 26.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR45586TPR REPEAT-CONTAINING PROTEIN PA4667coord: 12..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1047_length_14702_cov_4.831086contigNODE_1047_length_14702_cov_4.831086:10310..11392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9163.t1Gcaud9163.t1Gracilaria caudata M_176_S67 malemRNANODE_1047_length_14702_cov_4.831086 10310..11392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9163.t1 ID=Gcaud9163.t1|Name=Gcaud9163.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MSPVPRKARHSRRSRAKSARRVKQNTLQLSNPISVDALVRDAKTCEANGQ
LQDAISKLERAVTLKPDDAGFYEELATLYMQETRSEDAVRALRMAITLKP
NDGFEKYNYLAQLLGDTEEAVLSARKGIELIKMELTSIDKSQEARTQELR
EFQASAHCSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGV
SEQESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVL
VAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLL
AVTHWKRRQPSEARECLAQTRSILERSDGYEGELEEEMIDKLYEELEKIS
GDPNKGVPQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf