Gcaud8626.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8626.t1
Unique NameGcaud8626.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length482
Homology
BLAST of Gcaud8626.t1 vs. uniprot
Match: A0A2V3II28_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II28_9FLOR)

HSP 1 Score: 408 bits (1048), Expect = 3.140e-135
Identity = 219/481 (45.53%), Postives = 308/481 (64.03%), Query Frame = 0
Query:    1 MITIRFGSGVVAAFIFLVFELLVFPALLYTTSKTASLFLYWHASKGNDVQVSQMKFPLWNEGLSRHQRSHVLLLVVRIILVTIPVYLETRLISRDEPELVTRNIQTALIPQPADDWFDYQSQAGEDIIELRNLGLETYFACTHMEEDGWVWAKVANVTLLDGF-RQEIRCVSSTQTPIYRLEEEVIDFLGDTDTENITLTVSMNEGLVKDFPSELVLHGTV-EDARPNDEAFRITKVRNLNDTDLDCFFADSVKTAISRPSNGVRPIEWRGWCQRVQGQMVEFYSLGVELDEIRM------SEEFSVSGA---IRTRNGTFDTSVKHRGNFEFKDRILLNAQHLTNVYPGFADSARASDVARQVLYSMARNVSVAVQSGRVLHRTEIGADVLVITVAEVAVVVVFTLLMEVGSRTVWKGVQEPNTVEGLSRFWAQSEALWTAKKRKGGDKWVTLQLCKHGSDGGGRLLLEPVRARRADEEF 470
            M+ + F SGVV+A +FL FE++VFP L Y+TS  ASLFLY +A KGNDV + +MKFPLW+EGLSRHQ SH  LL +RI+L+ IPVYLET L SR+EPE+V+R +  A +PQP DDW+ YQ ++GE I  LR  GL T+ ACT ++E GWVWAKVAN T +      +IRCVS+T+ PIY L E  + + G  + + + ++VS  EG V DFP  LVL      +A P + AFR+     LNDT + C+F  +V+T  S+  NG     WRGWCQ+ +   V FYSL V +D++ M      + E    G+   +R+RN T    + +RG+F+FKD++LL A+HL N  P +  S RASD+A+ +LYS A NV+V   SGR L RTEI    ++I ++E+ VV++F L++     + W  +Q+PNTV GLS  WA+S+   + ++ K G KW+ L+L + GS+G G L        R +++ 
Sbjct:    1 MVVVPFSSGVVSALLFLAFEIIVFPLLFYSTSILASLFLYRNARKGNDVVIDKMKFPLWSEGLSRHQTSHYSLLAIRIVLIAIPVYLETTLESREEPEMVSRTVTHAFVPQPTDDWYTYQIRSGEHIDSLRRTGLNTFLACTSVDEKGWVWAKVANFTYIQEHDAHQIRCVSNTEQPIYSLTEATVKY-GPGNVQLLKMSVSWTEGRVADFPQALVLKDRFGREAPPGETAFRVHNAVALNDTAVKCYFPQTVRTRFSKSRNGHPHTAWRGWCQKEEPIGVAFYSLLVNMDQLPMHNLSYETRERGRCGSSCKLRSRNATTVLEIVYRGSFQFKDKVLLGAKHLANYIPDYDSSLRASDIAQCILYSKASNVTVLTLSGRTLPRTEIEGRAIIIAISEIVVVLLFALMLSCARLSKWGHIQQPNTVSGLSNCWAESQKALSHQRTKEG-KWIKLRLRRTGSEGEGPLRFTTSETMRNEQKL 479          
BLAST of Gcaud8626.t1 vs. uniprot
Match: A0A2V3II21_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II21_9FLOR)

HSP 1 Score: 191 bits (485), Expect = 8.230e-52
Identity = 146/441 (33.11%), Postives = 212/441 (48.07%), Query Frame = 0
Query:   46 GNDVQVSQMKFPLWNEGLSRHQRSHVLLLVVRIILVTIPVYLETRLISRDEPELVTRNIQTALIPQPADDWFDYQSQAGEDIIELRNLGL---ETYFACTHMEEDGWVWAKVANVTLLDGFRQEIRCVSSTQTPIYRLEEEVIDFL------GDTDTE-------NITLTVSMNEGLVKDFPSELVLHGTVEDARPNDEAFRITKVRNLNDTDLDCFFADSVKT---AISRPSNGVRPIEWRGWCQRVQGQMVEFYSLGVE-LDEIRMSEEFSVSGAIRTRNGTFDTSVKHRGNFEFKDRILLNAQHLTNVYPGFADSARASDVA--RQVLYSMARNVSVAVQSGRVLHRTEIGADVLVITVAEVAVVVVFTLLMEVGSRTVWKGVQEPNTVEGLSRFWA--QSEALWTAKKRKGGDKWVTLQLCKHGSDGGGRLLLEPVR 462
            G  ++V  + +PLWNEGL   Q SH+LL ++RI  + IPVYLETR IS   P  V + I+ A + QP  ++ D      E   + RN+ L   E +  C   ++DGWV AK+ANVTL+   R  I CV  T+  +YR  E+   F+       D   E       N+TL V  +EG  K F        +VED  PN +  ++  V  L+  D  CFF  +      A  R       +     CQ V G  V+FY   V+ L     +      G + ++     T+ +  G+ E+K+ I++NA HL+     F  + R   +   R +LYS A NV+V V         E+   V+V+   EV VV+V  L + V SR  W  +Q  NTVEGLS  WA  QS   W    +K G   ++L+L ++  DG  R + + V+
Sbjct:    2 GKSIRVRSIPYPLWNEGLFHRQPSHLLLFLIRIACIVIPVYLETRFISHSNPIPVKKLIRNAYVSQP--NYHDVHPLWSEQR-DPRNVVLLPEEVFHRCAARDDDGWVIAKIANVTLVGKDRDLIHCVKGTEQAVYRTVEKTPHFVESSVVVNDQSKEKTFVYQPNLTLEVWRDEGPFKRFSP----WPSVEDDDPNRQYLQVKNVTVLDTKDFQCFFWRAPVAEGHAFDREDRIYEYVLDSFVCQNVTGNFVDFYFTSVQDLANESNTRILEQGGNLVSKQSIVSTTFEFIGSLEYKNEIIINAGHLSRHQFRFPPTTRFQFLLMIRAILYSRASNVTVEVPGDEKTRSVELDVVVIVVGAMEVIVVLVLGLTLAVISRYKWDDMQRANTVEGLSHIWAMTQSRTWWDLSSKKNGP--ISLRLKRYICDGKERFMYDAVQ 433          
The following BLAST results are available for this feature:
BLAST of Gcaud8626.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3II28_9FLOR3.140e-13545.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3II21_9FLOR8.230e-5233.11Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 376..397
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..375
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..87
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 398..481
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..29
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_901_length_16318_cov_4.606212contigNODE_901_length_16318_cov_4.606212:12082..13527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8626.t1Gcaud8626.t1Gracilaria caudata M_176_S67 malemRNANODE_901_length_16318_cov_4.606212 12082..13527 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8626.t1 ID=Gcaud8626.t1|Name=Gcaud8626.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=482bp
MITIRFGSGVVAAFIFLVFELLVFPALLYTTSKTASLFLYWHASKGNDVQ
VSQMKFPLWNEGLSRHQRSHVLLLVVRIILVTIPVYLETRLISRDEPELV
TRNIQTALIPQPADDWFDYQSQAGEDIIELRNLGLETYFACTHMEEDGWV
WAKVANVTLLDGFRQEIRCVSSTQTPIYRLEEEVIDFLGDTDTENITLTV
SMNEGLVKDFPSELVLHGTVEDARPNDEAFRITKVRNLNDTDLDCFFADS
VKTAISRPSNGVRPIEWRGWCQRVQGQMVEFYSLGVELDEIRMSEEFSVS
GAIRTRNGTFDTSVKHRGNFEFKDRILLNAQHLTNVYPGFADSARASDVA
RQVLYSMARNVSVAVQSGRVLHRTEIGADVLVITVAEVAVVVVFTLLMEV
GSRTVWKGVQEPNTVEGLSRFWAQSEALWTAKKRKGGDKWVTLQLCKHGS
DGGGRLLLEPVRARRADEEFGGSDSQRTESD*
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