Gcaud861.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud861.t1
Unique Name	Gcaud861.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	129

Homology

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A2V3J0S5_9FLOR (60S ribosomal protein L4-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0S5_9FLOR)

HSP 1 Score: 234 bits (597), Expect = 1.890e-74
Identity = 116/128 (90.62%), Postives = 122/128 (95.31%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTKIWRKWHRKVP+NQKRYATVSALAASALPALVMARGHEIDDVPEVPLVI +SV+AF KTAKAVTLL+SLGAYDDVERVMETK  RAGKGKMRNRRYKQRRGPLVVY  DDGIV+AFR
Sbjct:   99 MCRGGRMFAPTKIWRKWHRKVPVNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIDNSVEAFKKTAKAVTLLKSLGAYDDVERVMETKKQRAGKGKMRNRRYKQRRGPLVVYDKDDGIVKAFR 226

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BLAST of Gcaud861.t1 vs. uniprot
Match: R7QMW1_CHOCR (Component of cytosolic 80S ribosome and 60S large subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMW1_CHOCR)

HSP 1 Score: 218 bits (555), Expect = 4.250e-68
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPT+IWRKWHRKVP  QKRYA VSALAASALPALVMARGHEIDDVPEVPLVI  + +   KTAKAVTLL+SLGAYDDVERVMET+  RAGKGK+RNRR+KQRRGPLVVY  DDGIV+AFR
Sbjct:   98 MCRGGRMFAPTRIWRKWHRKVPRKQKRYAVVSALAASALPALVMARGHEIDDVPEVPLVIDGTAEGMKKTAKAVTLLKSLGAYDDVERVMETRKMRAGKGKLRNRRFKQRRGPLVVYEKDDGIVKAFR 225

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BLAST of Gcaud861.t1 vs. uniprot
Match: C1N5X9_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N5X9_MICPC)

HSP 1 Score: 194 bits (492), Expect = 2.770e-58
Identity = 92/128 (71.88%), Postives = 110/128 (85.94%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTK WR+WHR+V L QKRYA  SALAASA+PAL+MARGH ++ VPEVPLV+ D V++  KTAKAV LL+S+GAY DVE+V E++N R+GKGKMRNRRY QRRGPLVVY +DDGI +AFR
Sbjct:   91 MCRGGRMFAPTKTWRRWHRRVNLKQKRYAVCSALAASAVPALLMARGHAVETVPEVPLVVGDDVESIAKTAKAVALLKSIGAYADVEKVKESRNIRSGKGKMRNRRYVQRRGPLVVYADDDGITKAFR 218

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A5J4Y2W8_9CHLO (60S ribosomal L4-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y2W8_9CHLO)

HSP 1 Score: 192 bits (487), Expect = 1.800e-57
Identity = 86/128 (67.19%), Postives = 111/128 (86.72%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+F+PTK+WR+WHRK+ +NQKRYA VSALAASALP+LVMARGH+I+ VPE+PLV+ DS ++  KT+KAV +L+S+GAY+D E+  ++KN R GKGKMRNRRY  R+GPLV+Y ND+GI +AFR
Sbjct:   94 MCRGGRMFSPTKVWRRWHRKININQKRYAVVSALAASALPSLVMARGHKIEKVPEIPLVVDDSSESITKTSKAVQILKSVGAYEDAEKAKDSKNVRRGKGKMRNRRYVNRKGPLVIYGNDNGIAKAFR 221

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A1Y2I5J5_9FUNG (Ribosomal protein L2 n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I5J5_9FUNG)

HSP 1 Score: 189 bits (480), Expect = 7.590e-57
Identity = 90/128 (70.31%), Postives = 110/128 (85.94%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTK+WR+WH +  +N+KR+A VSALAASA+PALVMARGH I+ + EVPLVI DS ++F KT +AVTLLR L AYDDV++V+ +K  RAGKGK+RNRR+ QRRGPLVVY ND+GIVRAFR
Sbjct:   92 MCRGGRMFAPTKVWRRWHVRTNVNEKRFAVVSALAASAIPALVMARGHRINRIAEVPLVIDDSAESFTKTKEAVTLLRKLKAYDDVKKVIHSKKLRAGKGKLRNRRHTQRRGPLVVYANDNGIVRAFR 219

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A699ZVZ8_HAELA (Component of cytosolic 80S ribosome and 60S large subunit n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZVZ8_HAELA)

HSP 1 Score: 187 bits (475), Expect = 1.100e-56
Identity = 85/128 (66.41%), Postives = 109/128 (85.16%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTK+WR+WHRK+ +NQKRYA VSALAASALP+LVMARGH +D VPEVPLV+ ++ ++  KT+KA+ +L+ +GAY DVE+  ++K  RAGKGKMRNRRY  R+GPLVVY N++GI +AFR
Sbjct:    1 MCRGGRMFAPTKVWRRWHRKININQKRYAVVSALAASALPSLVMARGHRVDQVPEVPLVLSEAAESITKTSKAIEVLKKIGAYADVEKAKDSKAIRAGKGKMRNRRYVLRKGPLVVYANNNGIAKAFR 128

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BLAST of Gcaud861.t1 vs. uniprot
Match: A4S8A6_OSTLU (Ribos_L4_asso_C domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S8A6_OSTLU)

HSP 1 Score: 189 bits (480), Expect = 1.390e-56
Identity = 88/128 (68.75%), Postives = 107/128 (83.59%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTK+WR+WHR+V L +KRYA  SALAASA+PAL++ARGH ++ VPEVPLV+ DS  +  KTAKAV LL+ LGAY DVE+V  ++N R+GKGKMRNRRY QRRGPLVVY  D+G+ RAFR
Sbjct:   91 MCRGGRMFAPTKVWRRWHRRVNLKEKRYAVCSALAASAVPALLLARGHRVEGVPEVPLVVDDSASSIKKTAKAVELLKQLGAYADVEKVKASRNIRSGKGKMRNRRYVQRRGPLVVYSEDNGVTRAFR 218

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A7S1ETT1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETT1_9RHOD)

HSP 1 Score: 188 bits (478), Expect = 1.520e-56
Identity = 91/128 (71.09%), Postives = 108/128 (84.38%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTKIWRKWH K+ +NQ+RYA VSALAASALPALVMARGH ID+V E+PLV+ +SV+ F KTAKA+ LL  LGA  DV+RV ++K  R+GKGK+R+RRY QRRGPLVVY  D GIV+AFR
Sbjct:   94 MCRGGRMFAPTKIWRKWHVKIAVNQRRYALVSALAASALPALVMARGHSIDEVAEIPLVVSNSVEEFKKTAKAMELLEKLGAAADVDRVKDSKKLRSGKGKLRDRRYTQRRGPLVVYAEDSGIVKAFR 221

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A7S0RBK1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RBK1_9CHLO)

HSP 1 Score: 189 bits (479), Expect = 2.970e-56
Identity = 87/128 (67.97%), Postives = 109/128 (85.16%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTK+WR+WHRK+ +NQKRYA VSALAASALPALVMARGH ++ VPEVPLV+ D+ ++  KT+KAV +L+ +GAY DVE+  ++K  RAGKGKMRNRRY  R+GPLVVY N++GI +AFR
Sbjct:   93 MCRGGRMFAPTKVWRRWHRKININQKRYAVVSALAASALPALVMARGHRVEQVPEVPLVLSDAAESITKTSKAVEVLKKIGAYPDVEKSKDSKAIRAGKGKMRNRRYTLRKGPLVVYANNNGIAKAFR 220

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BLAST of Gcaud861.t1 vs. uniprot
Match: A0A8I3A8B8_9AGAM (Ribosomal protein L4 domain-containing protein n=1 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I3A8B8_9AGAM)

HSP 1 Score: 186 bits (472), Expect = 1.150e-55
Identity = 88/128 (68.75%), Postives = 108/128 (84.38%), Query Frame = 0

Query:    1 MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEIDDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKGKMRNRRYKQRRGPLVVYHNDDGIVRAFR 128
            MCRGGR+FAPTK WRKWH KV  NQ+R+ATVSALAASALP+LV+ARGH I+ VPE+PLV+   V++F KT +AV LL+S+ AY DV +V  ++  RAGKGKMRNRRY+QRRGPLVVY+ D+GIV+AFR
Sbjct:   86 MCRGGRMFAPTKTWRKWHVKVNQNQRRFATVSALAASALPSLVLARGHRIEQVPEIPLVVPSEVESFKKTKEAVALLKSIDAYPDVVKVSNSRKLRAGKGKMRNRRYRQRRGPLVVYNEDNGIVKAFR 213

The following BLAST results are available for this feature:

BLAST of Gcaud861.t1 vs. uniprot

BLAST of Gcaud861.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J0S5_9FLOR	1.890e-74	90.63	60S ribosomal protein L4-A n=1 Tax=Gracilariopsis ...	[more]
R7QMW1_CHOCR	4.250e-68	82.81	Component of cytosolic 80S ribosome and 60S large ...	[more]
C1N5X9_MICPC	2.770e-58	71.88	Predicted protein n=2 Tax=Micromonas pusilla TaxID...	[more]
A0A5J4Y2W8_9CHLO	1.800e-57	67.19	60S ribosomal L4-like n=1 Tax=Trebouxia sp. A1-2 T...	[more]
A0A1Y2I5J5_9FUNG	7.590e-57	70.31	Ribosomal protein L2 n=1 Tax=Catenaria anguillulae...	[more]
A0A699ZVZ8_HAELA	1.100e-56	66.41	Component of cytosolic 80S ribosome and 60S large ...	[more]
A4S8A6_OSTLU	1.390e-56	68.75	Ribos_L4_asso_C domain-containing protein n=1 Tax=...	[more]
A0A7S1ETT1_9RHOD	1.520e-56	71.09	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A7S0RBK1_9CHLO	2.970e-56	67.97	Hypothetical protein n=1 Tax=Chlamydomonas leiostr...	[more]
A0A8I3A8B8_9AGAM	1.150e-55	68.75	Ribosomal protein L4 domain-containing protein n=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 1..128 e-value: 3.2E-13 score: 49.8
IPR023574	Ribosomal protein L4 domain superfamily	GENE3D	3.40.1370.10		coord: 1..129 e-value: 6.6E-56 score: 191.6
IPR023574	Ribosomal protein L4 domain superfamily	SUPERFAMILY	52166	Ribosomal protein L4	coord: 1..128
IPR045240	Ribosomal protein L4, eukaryotic and archaeal type	PANTHER	PTHR19431	60S RIBOSOMAL PROTEIN L4	coord: 1..128
None	No IPR available	PANTHER	PTHR19431:SF0	60S RIBOSOMAL PROTEIN L4	coord: 1..128
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..28
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 40..45
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..45
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 29..39
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..129
IPR013000	Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site	PROSITE	PS00939	RIBOSOMAL_L1E	coord: 22..48

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6474_length_1168_cov_3.550604	contig	NODE_6474_length_1168_cov_3.550604:2..386 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud861.t1	Gcaud861.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_6474_length_1168_cov_3.550604 2..386 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud861.t1 ID=Gcaud861.t1|Name=Gcaud861.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=129bp
MCRGGRVFAPTKIWRKWHRKVPLNQKRYATVSALAASALPALVMARGHEI
DDVPEVPLVIHDSVQAFNKTAKAVTLLRSLGAYDDVERVMETKNFRAGKG
KMRNRRYKQRRGPLVVYHNDDGIVRAFRX

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002136	Ribosomal_L4/L1e
IPR023574	Ribosomal_L4_dom_sf
IPR045240	Ribosomal_L4_euk/arch
IPR013000	Ribosomal_L4/L1e_euk/arc_CS