Gcaud8535.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8535.t1
Unique NameGcaud8535.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length335
Homology
BLAST of Gcaud8535.t1 vs. uniprot
Match: A0A2V3J7E4_9FLOR (Rho GTPase-activating protein 22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7E4_9FLOR)

HSP 1 Score: 529 bits (1362), Expect = 2.040e-187
Identity = 272/341 (79.77%), Postives = 293/341 (85.92%), Query Frame = 0
Query:    1 MAMAGLHTDA---LGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQARQTPHSLAPTSLPSRRPSSQYDAPVEPGCLCFGSSKPS-RRPPTRHVSSHVT--RPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYIESQPSADAQGASPLRTAAS-YRESHLARTVDATARISSRKRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARVFDENLCQKISELQSST 334
            MA AGLH      +GEPAI+ +EDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQAR  PH+ +        PS  YD P EPGCLCFGSSK S RRPP RHV +H++  RPRREYYPDNLSVQPERHPWTPHMEWLIL+CIDFLEL+GL ERTLFAVSAVDDLVRNMHVDIG  LPSNTDPHVAAGVIKAQIRHANEPLVAKDCL+AYI SQP  D Q  +P  +  S YR+SHLARTVDAT R+SS +RAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVM MIEDARVFDE LCQKI++L++ +
Sbjct:    1 MAAAGLHRHQDPPIGEPAIIHKEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPAANQARHAPHTFSAPPPQQHIPSPHYDPPEEPGCLCFGSSKQSSRRPPARHVPNHISSARPRREYYPDNLSVQPERHPWTPHMEWLILACIDFLELHGLDERTLFAVSAVDDLVRNMHVDIGVKLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLKAYIASQPPDDGQSTAPAASTPSIYRDSHLARTVDATERMSSPRRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMTMIEDARVFDEKLCQKIADLEAKS 341          
BLAST of Gcaud8535.t1 vs. uniprot
Match: R7QNW3_CHOCR (Rho-GAP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNW3_CHOCR)

HSP 1 Score: 338 bits (866), Expect = 3.160e-113
Identity = 183/277 (66.06%), Postives = 204/277 (73.65%), Query Frame = 0
Query:   54 MQPAANQARQTPHSLAPTSLPSRRPSSQYDAPVEPGCLCFGSSKPSRRPPTRHVSSHVTRPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYIESQPSADAQGASPLRTAASYRESHLARTVDATARISSRKRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARVFDENLCQKISEL 330
            MQP ANQAR   H     ++PS  P+         GC C GS    +  P+R V+    R +REYYPDNLS+QP RH W   MEWLI++C+DFLE  GL ER +FAVSAVDDLVRNM V+ G  L  NTDP+VAAGVIKAQIRHA+E LV K+CLR YIE Q + +  G SP     SY ESHLARTVD T RIS  +RAY+LAR MRLLGRVSAN EVS+MNAHCLAKCVAPSMLHWDPNS FALLMLGKITAFVM MIEDARVFDENLCQKI EL
Sbjct:    1 MQPVANQAR---HQSTSPTIPSEEPA---------GCFCLGSRTVHQ--PSREVAH---RTKREYYPDNLSIQPNRHKWGRRMEWLIVACVDFLEKEGLDERNIFAVSAVDDLVRNMTVEEGEELAKNTDPNVAAGVIKAQIRHADEALVGKECLRTYIELQQAREGDG-SPGDGLRSYEESHLARTVDDTKRISGARRAYVLARIMRLLGRVSANEEVSRMNAHCLAKCVAPSMLHWDPNSGFALLMLGKITAFVMTMIEDARVFDENLCQKIDEL 259          
BLAST of Gcaud8535.t1 vs. uniprot
Match: A0A7S1TMH3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TMH3_9RHOD)

HSP 1 Score: 155 bits (391), Expect = 5.720e-41
Identity = 109/333 (32.73%), Postives = 170/333 (51.05%), Query Frame = 0
Query:   15 AIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNAFMRMQPA-------ANQARQTPHSLAPTSLPSRRPSSQYDAPVEPGCLCFGSSKPSRRPPTRHVSSHVTRPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYIESQPSADAQGA--SPLRT---------------AASYRESHLARTVDATARISSRKRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALLMLGKITAFVMNMIEDARVFDENL 323
            A++ Q++++AG         V+  T LIAR EAL  F + Q         A  A QTP++ +  +  S      +         CFG+   +        S+    P        L VQ ++  W    E  +L CID L   G+ E+ LFAVSA  D V  + V +G  LP N D HVAA  IK ++RHA EP +    L+ ++E + SA A+    SP  +               + S+ +S + +T++      S KRAY+ ARF+ LLG +++ +E ++MN+H LA C+ PS+L WD N+  ALL+L ++TAFV+ +I+DA+++ E +
Sbjct:    9 AVMGQQELLAGT--------VEKETLLIARPEALGHFEQQQAXXXXXXXRAAHAVQTPNAASANNSNSNSKQGFFSK-----VFCFGADNSTATAAPSSGSARAAAPANL----ELEVQRKKFEWNELTEHTLLVCIDHLFKYGIREQRLFAVSADQDDVDALRVQLGMPLPENVDLHVAAATIKDRMRHAKEPFMPIAALKPWLEKKRSAAAETEHMSPPHSGRSSSFSDDQCAALASGSFEDSVIKQTLEIMRNEVSPKRAYLCARFLLLLGYIASGIETTQMNSHNLALCITPSLLQWDNNAKQALLILSRMTAFVIQLIDDAQLYSEKV 324          
BLAST of Gcaud8535.t1 vs. uniprot
Match: A0A1X6PAA0_PORUM (Rho-GAP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAA0_PORUM)

HSP 1 Score: 108 bits (271), Expect = 1.080e-23
Identity = 73/197 (37.06%), Postives = 93/197 (47.21%), Query Frame = 0
Query:   42 IARAEALNAFMRMQP-------------AANQARQTPHSLAPTSLPSRRPSSQYDAP-------------VEPGCLCFGSSKPSRRPPTRHVSSHVTRPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELNGLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANEPLVAKDCLRAYI 212
            IAR EA+N F++MQP             AA QAR T     P+    R  +++                 + P   C G ++  R P                       +P R PWTP  EW I++C++ L+  GL E  LFAVSAVD  VR + V +GA LP  TDPHVA G IKA IR A+EPLV    L+AYI
Sbjct:   33 IARPEAMNVFIQMQPEASKALNRNLAAAAARQARSTDVDARPSGSRERNQTTRXXXXXXXXXXXXXXXLLLRPQRRCRGLARGGRAPXXXXXXXXXXX---XXXXXXXXXEPPRLPWTPDTEWQIVACVELLQREGLDEPNLFAVSAVDAHVRRLRVRVGAPLPGGTDPHVATGAIKAHIRAADEPLVPAASLQAYI 226          
The following BLAST results are available for this feature:
BLAST of Gcaud8535.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J7E4_9FLOR2.040e-18779.77Rho GTPase-activating protein 22 n=1 Tax=Gracilari... [more]
R7QNW3_CHOCR3.160e-11366.06Rho-GAP domain-containing protein n=1 Tax=Chondrus... [more]
A0A7S1TMH3_9RHOD5.720e-4132.73Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A1X6PAA0_PORUM1.080e-2337.06Rho-GAP domain-containing protein n=1 Tax=Porphyra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 134..317
e-value: 1.0E-4
score: 13.1
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 140..292
e-value: 2.4E-14
score: 53.4
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 121..320
score: 15.368814
IPR008936Rho GTPase activation proteinGENE3D1.10.555.10Rho GTPase activation proteincoord: 136..328
e-value: 1.2E-20
score: 75.8
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 139..318
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..79
NoneNo IPR availablePANTHERPTHR45808:SF2RHO GTPASE-ACTIVATING PROTEIN 68Fcoord: 125..322
NoneNo IPR availablePANTHERPTHR45808RHO GTPASE-ACTIVATING PROTEIN 68Fcoord: 125..322
NoneNo IPR availableCDDcd00159RhoGAPcoord: 139..315
e-value: 1.85157E-21
score: 87.7424

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_907_length_16250_cov_3.969800contigNODE_907_length_16250_cov_3.969800:15139..16143 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8535.t1Gcaud8535.t1Gracilaria caudata M_176_S67 malemRNANODE_907_length_16250_cov_3.969800 15139..16143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8535.t1 ID=Gcaud8535.t1|Name=Gcaud8535.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MAMAGLHTDALGEPAIVRQEDMMAGMMGGGGTGIVDNGTSLIARAEALNA
FMRMQPAANQARQTPHSLAPTSLPSRRPSSQYDAPVEPGCLCFGSSKPSR
RPPTRHVSSHVTRPRREYYPDNLSVQPERHPWTPHMEWLILSCIDFLELN
GLGERTLFAVSAVDDLVRNMHVDIGASLPSNTDPHVAAGVIKAQIRHANE
PLVAKDCLRAYIESQPSADAQGASPLRTAASYRESHLARTVDATARISSR
KRAYILARFMRLLGRVSANVEVSKMNAHCLAKCVAPSMLHWDPNSSFALL
MLGKITAFVMNMIEDARVFDENLCQKISELQSST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot